small-fish-gui 1.3.1__tar.gz → 1.3.3__tar.gz

{small_fish_gui-1.3.1 → small_fish_gui-1.3.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: small_fish_gui
-Version: 1.3.1
+Version: 1.3.3
 Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
 Project-URL: Homepage, https://github.com/2Echoes/small_fish
 Project-URL: Issues, https://github.com/2Echoes/small_fish/issues

{small_fish_gui-1.3.1 → small_fish_gui-1.3.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "small_fish_gui"
-version = "1.3.1"
+version = "1.3.3"
 authors = [
   { name="Slimani Floric", email="floric.slimani@live.com" },
 ]

{small_fish_gui-1.3.1 → small_fish_gui-1.3.3}/src/small_fish_gui/__init__.py

@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 """
-__version__ = "1.3.1"
+__version__ = "1.3.3"

{small_fish_gui-1.3.1 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_napari_wrapper.py

@@ -198,8 +198,6 @@ def threshold_selection(
     To view code for spot selection please have a look at magicgui instance created with `detection._create_threshold_slider` which is then passed to this napari wrapper as 'threshold_slider' argument.
     """
     
-    print(voxel_size)
-    
     Viewer = napari.Viewer(title= "Small fish - Threshold selector", ndisplay=2, show=True)
     Viewer.add_image(
         data= image,

{small_fish_gui-1.3.1 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/detection.py

@@ -327,8 +327,8 @@ def _launch_detection(image, image_input_values: dict) :
             logfiltered_image=filtered_image,
             local_maxima=local_maxima,
             default=threshold,
-            min=filtered_image[local_maxima].min(),
-            max=filtered_image[local_maxima].max(),
+            min_value=filtered_image[local_maxima].min(),
+            max_value=filtered_image[local_maxima].max(),
             voxel_size=voxel_size
         )
 
@@ -746,16 +746,18 @@ def _create_threshold_slider(
         logfiltered_image : np.ndarray,
         local_maxima : np.ndarray,
         default : int,
-        min : int,
-        max : int,
+        min_value : int,
+        max_value : int,
         voxel_size
 ) :
     
     if isinstance(default, float) : default = round(default)
+    min_value = max(min_value,15) #Security to avoid user put too low threshold and crashes Napari if out of memory.
 
     @magicgui(
-        threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min, 'max' : max},
-        auto_call=True
+        threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min_value, 'max' : max_value, 'tracking' : True,},
+        auto_call=False,
+        call_button= "Apply"
     )
     def threshold_slider(threshold: int) -> LayerDataTuple:
         spots = detection.spots_thresholding(
@@ -764,7 +766,6 @@ def _create_threshold_slider(
             threshold=threshold
         )[0]
 
-        print(voxel_size)
         layer_args = {
             'size': 5, 
             'scale' : voxel_size,