slide2vec 6.1.0__tar.gz → 6.1.1__tar.gz

{slide2vec-6.1.0 → slide2vec-6.1.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 6.1.0
+Version: 6.1.1
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0
@@ -15,7 +15,7 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2
 Requires-Dist: omegaconf
 Requires-Dist: matplotlib
 Requires-Dist: numpy<2
@@ -75,7 +75,7 @@ Requires-Dist: numpy<2; extra == "fm"
 Requires-Dist: pandas; extra == "fm"
 Requires-Dist: pillow; extra == "fm"
 Requires-Dist: rich; extra == "fm"
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0; extra == "fm"
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2; extra == "fm"
 Requires-Dist: wandb; extra == "fm"
 Requires-Dist: torch<2.8,>=2.3; extra == "fm"
 Requires-Dist: torchvision>=0.18.0; extra == "fm"

{slide2vec-6.1.0 → slide2vec-6.1.1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "slide2vec"
-version = "6.1.0"
+version = "6.1.1"
 description = "Embedding of whole slide images with Foundation Models"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -21,7 +21,7 @@ classifiers = [
     "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
-    "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0",
+    "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2",
     "omegaconf",
     "matplotlib",
     "numpy<2",
@@ -100,7 +100,7 @@ fm = [
     "pandas",
     "pillow",
     "rich",
-    "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0",
+    "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2",
     "wandb",
     "torch>=2.3,<2.8",
     "torchvision>=0.18.0",
@@ -180,7 +180,7 @@ no_implicit_reexport = true
 max-line-length = 160
 
 [tool.bumpver]
-current_version = "6.1.0"
+current_version = "6.1.1"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false
 tag = false

{slide2vec-6.1.0 → slide2vec-6.1.1}/slide2vec/__init__.py

@@ -31,7 +31,7 @@ from slide2vec.encoders import (
 )
 
 
-__version__ = "6.1.0"
+__version__ = "6.1.1"
 
 __all__ = [
     "Model",

{slide2vec-6.1.0 → slide2vec-6.1.1}/slide2vec/runtime/hierarchical.py

@@ -1,5 +1,5 @@
 import numpy as np
-from hs2p.wsi.geometry import plan_spacing_read
+from hs2p.wsi.geometry import plan_spacing_read, tile_size_lv0_from_plan
 
 from slide2vec.api import PreprocessingConfig
 from slide2vec.utils.coordinates import coordinate_arrays
@@ -53,13 +53,9 @@ def resolve_hierarchical_geometry(preprocessing: PreprocessingConfig, tiling_res
         tolerance=float(preprocessing.tolerance),
         content_kind="image",
     )
-    read_spacing_um = float(read_plan.read_spacing_um)
     read_tile_size_px = int(read_plan.read_size_px[0])
     read_region_size_px = read_tile_size_px * multiple
-    # Use the actual read geometry that produced the tile crop. When the
-    # resolved spacing is considered equivalent to the requested spacing,
-    # this keeps the level-0 footprint aligned with the real crop size.
-    tile_size_lv0 = int(round(read_tile_size_px * read_spacing_um / base_spacing_um))
+    tile_size_lv0 = tile_size_lv0_from_plan(read_plan, level0_spacing_um=base_spacing_um)
     return {
         "region_tile_multiple": multiple,
         "tiles_per_region": multiple * multiple,

{slide2vec-6.1.0 → slide2vec-6.1.1}/slide2vec.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 6.1.0
+Version: 6.1.1
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0
@@ -15,7 +15,7 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2
 Requires-Dist: omegaconf
 Requires-Dist: matplotlib
 Requires-Dist: numpy<2
@@ -75,7 +75,7 @@ Requires-Dist: numpy<2; extra == "fm"
 Requires-Dist: pandas; extra == "fm"
 Requires-Dist: pillow; extra == "fm"
 Requires-Dist: rich; extra == "fm"
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0; extra == "fm"
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2; extra == "fm"
 Requires-Dist: wandb; extra == "fm"
 Requires-Dist: torch<2.8,>=2.3; extra == "fm"
 Requires-Dist: torchvision>=0.18.0; extra == "fm"

{slide2vec-6.1.0 → slide2vec-6.1.1}/slide2vec.egg-info/requires.txt

@@ -1,4 +1,4 @@
-hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0
+hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2
 omegaconf
 matplotlib
 numpy<2
@@ -27,7 +27,7 @@ numpy<2
 pandas
 pillow
 rich
-hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0
+hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2
 wandb
 torch<2.8,>=2.3
 torchvision>=0.18.0

{slide2vec-6.1.0 → slide2vec-6.1.1}/tests/test_hs2p_package_cutover.py

@@ -23,7 +23,7 @@ def test_package_root_exports_api():
     assert hasattr(package, "DenseRegionArtifact")
 
 
-def test_dependency_declarations_require_hs2p_5_0_0_with_consistent_extras():
+def test_dependency_declarations_require_hs2p_5_0_2_with_consistent_extras():
     project = tomllib.loads(
         (Path(__file__).resolve().parents[1] / "pyproject.toml").read_text(
             encoding="utf-8"
@@ -39,8 +39,8 @@ def test_dependency_declarations_require_hs2p_5_0_0_with_consistent_extras():
     ]
 
     assert hs2p_dependencies == [
-        "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0",
-        "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.0",
+        "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2",
+        "hs2p[asap,cucim,openslide,sam2,vips]>=5.0.2",
     ]