slide2vec 5.8.0__tar.gz → 5.8.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {slide2vec-5.8.0 → slide2vec-5.8.1}/PKG-INFO +3 -3
- {slide2vec-5.8.0 → slide2vec-5.8.1}/pyproject.toml +4 -4
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/__init__.py +1 -1
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/PKG-INFO +3 -3
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/requires.txt +2 -2
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_hs2p_package_cutover.py +3 -3
- {slide2vec-5.8.0 → slide2vec-5.8.1}/LICENSE +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/README.md +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/setup.cfg +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/__main__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/api.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/artifacts.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/cli.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/configs/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/configs/default.yaml +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/configs/resources.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/data/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/data/dataset.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/data/tile_reader.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/data/tile_store.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/dense_image_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/dense_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/direct_embed_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/image_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/pipeline_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/distributed/worker_entry.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/base.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/conch.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/dinov2.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/genbio.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/gigapath.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/gpfm.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/hibou.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/hoptimus.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/isight.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/lunit.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/midnight.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/blocks.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/case.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/loading.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/slide.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/moozy/types.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/mstar.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/musk.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/phikon.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/prism.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/prism2.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/prost40m.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/rudolfv2.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/titan.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/uni.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/virchow.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/models/waiv.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/registry.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/encoders/validation.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/inference.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/progress.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/artifacts_collect.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/batching.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/cpu_budget.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_encode.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_encoder_input.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_image_reading.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_image_recipe.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_image_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_image_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_regions.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_sliding.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/dense_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/distributed.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/distributed_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/effective_encoder_input.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/embedding.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/embedding_persist.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/embedding_pipeline.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/encoder_input_contract.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/hierarchical.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/image_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/image_specs.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/image_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/manifest.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/model_settings.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/patient_pipeline.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/persist_callbacks.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/persistence.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/pooled_encoder_input.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/preprocessing.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/process_list.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/progress_bridge.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/registry.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/serialization.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/sharding.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/slide_encode.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/tiling.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/tiling_pipeline.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/types.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/runtime/worker_io.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/__init__.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/config.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/coordinates.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/log_utils.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/tiling_io.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec/utils/utils.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/SOURCES.txt +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/dependency_links.txt +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/entry_points.txt +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/not-zip-safe +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/slide2vec.egg-info/top_level.txt +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_architecture_runtime_split.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_attention_extraction.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_encode_kit.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_encoder_input.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_extraction.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_image_reading.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_image_resume.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_image_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_image_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_regions.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_sliding.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_source_spacing.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dense_worker.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_dinov2_natimage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_encoder_capabilities.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_encoder_input_contract.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_encoder_plugins.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_encoder_provider_failures.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_encoder_registry.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_gpfm_genbio_heavy.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_image_shard.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_image_stage.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_isight.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_mascaret.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_output_consistency.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_patch_size_metadata.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_patient_manifest.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_phaet.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_pooled_encoder_input.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_pooled_geometry.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_prism2.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_progress.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_regression_core.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_regression_inference.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_regression_models.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_rudolfv2.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_runtime_batching.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_sharding.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_slide_coordinate_preparation.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_soma_migration.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_tile_store.py +0 -0
- {slide2vec-5.8.0 → slide2vec-5.8.1}/tests/test_tiling_pipeline.py +0 -0
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Metadata-Version: 2.4
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Name: slide2vec
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Version: 5.8.
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Summary: Embedding of whole slide images with Foundation Models
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Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
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License-Expression: Apache-2.0
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description = "Embedding of whole slide images with Foundation Models"
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readme = "README.md"
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requires-python = ">=3.10"
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Version: 5.8.1
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Summary: Embedding of whole slide images with Foundation Models
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Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
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License-Expression: Apache-2.0
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@@ -15,7 +15,7 @@ Classifier: Programming Language :: Python :: 3.13
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Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2
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Requires-Dist: omegaconf
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Requires-Dist: matplotlib
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Requires-Dist: numpy<2
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@@ -75,7 +75,7 @@ Requires-Dist: numpy<2; extra == "fm"
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Requires-Dist: pandas; extra == "fm"
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Requires-Dist: pillow; extra == "fm"
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Requires-Dist: rich; extra == "fm"
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Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2; extra == "fm"
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Requires-Dist: wandb; extra == "fm"
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Requires-Dist: torch<2.8,>=2.3; extra == "fm"
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Requires-Dist: torchvision>=0.18.0; extra == "fm"
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@@ -1,4 +1,4 @@
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hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2
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omegaconf
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matplotlib
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numpy<2
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@@ -27,7 +27,7 @@ numpy<2
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pandas
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pillow
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rich
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hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2
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wandb
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torch<2.8,>=2.3
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torchvision>=0.18.0
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@@ -23,7 +23,7 @@ def test_package_root_exports_api():
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assert hasattr(package, "DenseRegionArtifact")
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def
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def test_dependency_declarations_require_hs2p_4_4_2_with_consistent_extras():
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project = tomllib.loads(
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(Path(__file__).resolve().parents[1] / "pyproject.toml").read_text(
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encoding="utf-8"
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]
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assert hs2p_dependencies == [
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"hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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"hs2p[asap,cucim,openslide,sam2,vips]>=4.4.
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"hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2",
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"hs2p[asap,cucim,openslide,sam2,vips]>=4.4.2",
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]
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