slide2vec 5.4.0__tar.gz → 5.6.0__tar.gz

{slide2vec-5.4.0 → slide2vec-5.6.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 5.4.0
+Version: 5.6.0
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0
@@ -15,7 +15,7 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.3.0
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.0
 Requires-Dist: omegaconf
 Requires-Dist: matplotlib
 Requires-Dist: numpy<2
@@ -65,7 +65,7 @@ Requires-Dist: numpy<2; extra == "fm"
 Requires-Dist: pandas; extra == "fm"
 Requires-Dist: pillow; extra == "fm"
 Requires-Dist: rich; extra == "fm"
-Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.3.0; extra == "fm"
+Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.4.0; extra == "fm"
 Requires-Dist: wandb; extra == "fm"
 Requires-Dist: torch<2.8,>=2.3; extra == "fm"
 Requires-Dist: torchvision>=0.18.0; extra == "fm"

{slide2vec-5.4.0 → slide2vec-5.6.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "slide2vec"
-version = "5.4.0"
+version = "5.6.0"
 description = "Embedding of whole slide images with Foundation Models"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -21,7 +21,7 @@ classifiers = [
     "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
-    "hs2p[asap,cucim,openslide,sam2,vips]>=4.3.0",
+    "hs2p[asap,cucim,openslide,sam2,vips]>=4.4.0",
     "omegaconf",
     "matplotlib",
     "numpy<2",
@@ -88,7 +88,7 @@ fm = [
     "pandas",
     "pillow",
     "rich",
-    "hs2p[asap,cucim,openslide,sam2,vips]>=4.3.0",
+    "hs2p[asap,cucim,openslide,sam2,vips]>=4.4.0",
     "wandb",
     "torch>=2.3,<2.8",
     "torchvision>=0.18.0",
@@ -141,12 +141,13 @@ slide2vec = ["py.typed"]
 "slide2vec.configs" = ["*.yaml", "models/*.yaml", "preprocessing/*.yaml"]
 
 [tool.pytest.ini_options]
-addopts = "--cov=slide2vec"
+addopts = "--cov=slide2vec -m 'not gpu_integration'"
 testpaths = [
     "tests",
 ]
 markers = [
     "heavy: real-weight foundation-model inference on CPU; minutes per test. Excluded from the PR suite via `-m 'not heavy'`; run on the scheduled/manual heavy workflow (.github/workflows/nightly-heavy.yaml).",
+    "gpu_integration: real one-GPU versus multi-GPU parity; requires at least two visible CUDA devices. Run explicitly with `CUDA_VISIBLE_DEVICES=0,1 python -m pytest -m gpu_integration --no-cov`.",
 ]
 
 [tool.mypy]
@@ -167,7 +168,7 @@ no_implicit_reexport = true
 max-line-length = 160
 
 [tool.bumpver]
-current_version = "5.4.0"
+current_version = "5.6.0"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false       # We do version bumping in CI, not as a commit
 tag = false          # Git tag already exists — we don't auto-tag

{slide2vec-5.4.0 → slide2vec-5.6.0}/slide2vec/__init__.py

@@ -1,8 +1,10 @@
 from slide2vec.api import (
+    DenseImageOptions,
     DenseOptions,
     EmbeddedPatient,
     EmbeddedSlide,
     ExecutionOptions,
+    ImageSpec,
     Model,
     Pipeline,
     PreprocessingConfig,
@@ -11,14 +13,16 @@ from slide2vec.api import (
     list_models,
 )
 from slide2vec.artifacts import (
+    DenseImageArtifact,
     DenseRegionArtifact,
     HierarchicalEmbeddingArtifact,
+    ImageEmbeddingArtifact,
     SlideEmbeddingArtifact,
     TileEmbeddingArtifact,
 )
 
 
-__version__ = "5.4.0"
+__version__ = "5.6.0"
 
 __all__ = [
     "Model",
@@ -26,7 +30,9 @@ __all__ = [
     "Pipeline",
     "PreprocessingConfig",
     "DenseOptions",
+    "DenseImageOptions",
     "SlideRegions",
+    "ImageSpec",
     "ExecutionOptions",
     "RunResult",
     "EmbeddedPatient",
@@ -35,5 +41,7 @@ __all__ = [
     "HierarchicalEmbeddingArtifact",
     "TileEmbeddingArtifact",
     "DenseRegionArtifact",
+    "DenseImageArtifact",
+    "ImageEmbeddingArtifact",
     "__version__",
 ]