slide2vec 4.6.3__tar.gz → 4.6.4__tar.gz

{slide2vec-4.6.3 → slide2vec-4.6.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 4.6.3
+Version: 4.6.4
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0

{slide2vec-4.6.3 → slide2vec-4.6.4}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "slide2vec"
-version = "4.6.3"
+version = "4.6.4"
 description = "Embedding of whole slide images with Foundation Models"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -164,7 +164,7 @@ no_implicit_reexport = true
 max-line-length = 160
 
 [tool.bumpver]
-current_version = "4.6.3"
+current_version = "4.6.4"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false       # We do version bumping in CI, not as a commit
 tag = false          # Git tag already exists — we don't auto-tag

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec/__init__.py

@@ -11,7 +11,7 @@ from slide2vec.api import (
 from slide2vec.artifacts import HierarchicalEmbeddingArtifact, SlideEmbeddingArtifact, TileEmbeddingArtifact
 
 
-__version__ = "4.6.3"
+__version__ = "4.6.4"
 
 __all__ = [
     "Model",

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec/encoders/models/conch.py

@@ -141,6 +141,13 @@ class CONCH(TileEncoder):
     def encode_dim(self) -> int:
         return 512
 
+    @property
+    def patch_size(self) -> tuple[int, int]:
+        # The CONCH vision trunk is a timm ViT-B/16; expose its patch size so the
+        # dense path can resolve the token grid. open_clip builds the trunk without
+        # dynamic_img_size, so dense extraction must use the native 448 window.
+        return _patch_size_from_trunk(self._model.visual.trunk)
+
     @property
     def device(self) -> torch.device:
         return self._device
@@ -204,6 +211,11 @@ class CONCHv15(TileEncoder):
     def encode_dim(self) -> int:
         return 768
 
+    @property
+    def patch_size(self) -> tuple[int, int]:
+        # CONCHv15's TITAN trunk is a timm ViT; expose its patch size for the dense path.
+        return _patch_size_from_trunk(self._model.trunk)
+
     @property
     def device(self) -> torch.device:
         return self._device

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec/encoders/models/hibou.py

@@ -123,6 +123,12 @@ class _HibouBase(TileEncoder):
     def encode_dim(self) -> int:
         return self._encode_dim
 
+    @property
+    def patch_size(self) -> tuple[int, int]:
+        # HF Dinov2-style config carries the patch size; expose it for the dense path.
+        patch = int(self._model.config.patch_size)
+        return patch, patch
+
     @property
     def device(self) -> torch.device:
         return self._device

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec/encoders/models/midnight.py

@@ -124,6 +124,12 @@ class Midnight(TileEncoder):
     def encode_dim(self) -> int:
         return 3072
 
+    @property
+    def patch_size(self) -> tuple[int, int]:
+        # HF Dinov2-style config carries the patch size; expose it for the dense path.
+        patch = int(self._model.config.patch_size)
+        return patch, patch
+
     @property
     def device(self) -> torch.device:
         return self._device

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec/encoders/models/musk.py

@@ -114,6 +114,11 @@ class MUSK(TileEncoder):
     def encode_dim(self) -> int:
         return 2048 if self._output_variant == "ms_aug" else 1024  # cls
 
+    @property
+    def patch_size(self) -> tuple[int, int]:
+        # BEiT3 vision embedding carries the patch size; expose it for the dense path.
+        return _as_hw(self._model.beit3.vision_embed.patch_size)
+
     @property
     def device(self) -> torch.device:
         return self._device

{slide2vec-4.6.3 → slide2vec-4.6.4}/slide2vec.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 4.6.3
+Version: 4.6.4
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0