slide2vec 4.6.0__tar.gz → 4.6.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {slide2vec-4.6.0 → slide2vec-4.6.2}/PKG-INFO +3 -3
- {slide2vec-4.6.0 → slide2vec-4.6.2}/pyproject.toml +4 -4
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/__init__.py +1 -1
- slide2vec-4.6.2/slide2vec/encoders/base.py +653 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/conch.py +33 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/hibou.py +40 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/midnight.py +40 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/phikon.py +42 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/hierarchical.py +25 -7
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/PKG-INFO +3 -3
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/SOURCES.txt +1 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/requires.txt +2 -2
- slide2vec-4.6.2/tests/test_attention_extraction.py +427 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_regression_inference.py +41 -0
- slide2vec-4.6.0/slide2vec/encoders/base.py +0 -335
- {slide2vec-4.6.0 → slide2vec-4.6.2}/LICENSE +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/README.md +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/setup.cfg +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/__main__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/api.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/artifacts.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/cli.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/configs/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/configs/default.yaml +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/configs/resources.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/data/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/data/dataset.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/data/tile_reader.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/data/tile_store.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/distributed/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/distributed/direct_embed_worker.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/distributed/pipeline_worker.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/gigapath.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/hoptimus.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/lunit.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/blocks.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/case.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/loading.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/slide.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/moozy/types.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/musk.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/prism.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/prost40m.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/titan.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/uni.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/models/virchow.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/registry.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/encoders/validation.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/inference.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/progress.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/artifacts_collect.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/batching.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/cpu_budget.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/distributed.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/distributed_stage.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/embedding.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/embedding_persist.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/embedding_pipeline.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/manifest.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/model_settings.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/patient_pipeline.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/persist_callbacks.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/persistence.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/process_list.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/progress_bridge.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/registry.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/serialization.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/slide_encode.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/tiling.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/tiling_pipeline.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/types.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/runtime/worker_io.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/__init__.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/config.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/coordinates.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/log_utils.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/tiling_io.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec/utils/utils.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/dependency_links.txt +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/entry_points.txt +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/not-zip-safe +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/slide2vec.egg-info/top_level.txt +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_architecture_runtime_split.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_dense_extraction.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_dense_locality_gated.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_encoder_registry.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_hs2p_package_cutover.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_output_consistency.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_progress.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_regression_core.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_regression_models.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_runtime_batching.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_tile_store.py +0 -0
- {slide2vec-4.6.0 → slide2vec-4.6.2}/tests/test_tiling_pipeline.py +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: slide2vec
|
|
3
|
-
Version: 4.6.
|
|
3
|
+
Version: 4.6.2
|
|
4
4
|
Summary: Embedding of whole slide images with Foundation Models
|
|
5
5
|
Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
|
|
6
6
|
License-Expression: Apache-2.0
|
|
@@ -15,7 +15,7 @@ Classifier: Programming Language :: Python :: 3.13
|
|
|
15
15
|
Requires-Python: >=3.10
|
|
16
16
|
Description-Content-Type: text/markdown
|
|
17
17
|
License-File: LICENSE
|
|
18
|
-
Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.0.
|
|
18
|
+
Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.0.8
|
|
19
19
|
Requires-Dist: omegaconf
|
|
20
20
|
Requires-Dist: matplotlib
|
|
21
21
|
Requires-Dist: numpy<2
|
|
@@ -65,7 +65,7 @@ Requires-Dist: numpy<2; extra == "fm"
|
|
|
65
65
|
Requires-Dist: pandas; extra == "fm"
|
|
66
66
|
Requires-Dist: pillow; extra == "fm"
|
|
67
67
|
Requires-Dist: rich; extra == "fm"
|
|
68
|
-
Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.0.
|
|
68
|
+
Requires-Dist: hs2p[asap,cucim,openslide,sam2,vips]>=4.0.8; extra == "fm"
|
|
69
69
|
Requires-Dist: wandb; extra == "fm"
|
|
70
70
|
Requires-Dist: torch<2.8,>=2.3; extra == "fm"
|
|
71
71
|
Requires-Dist: torchvision>=0.18.0; extra == "fm"
|
|
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
|
|
|
4
4
|
|
|
5
5
|
[project]
|
|
6
6
|
name = "slide2vec"
|
|
7
|
-
version = "4.6.
|
|
7
|
+
version = "4.6.2"
|
|
8
8
|
description = "Embedding of whole slide images with Foundation Models"
|
|
9
9
|
readme = "README.md"
|
|
10
10
|
requires-python = ">=3.10"
|
|
@@ -21,7 +21,7 @@ classifiers = [
|
|
|
21
21
|
"Programming Language :: Python :: 3.13",
|
|
22
22
|
]
|
|
23
23
|
dependencies = [
|
|
24
|
-
"hs2p[asap,cucim,openslide,sam2,vips]>=4.0.
|
|
24
|
+
"hs2p[asap,cucim,openslide,sam2,vips]>=4.0.8",
|
|
25
25
|
"omegaconf",
|
|
26
26
|
"matplotlib",
|
|
27
27
|
"numpy<2",
|
|
@@ -88,7 +88,7 @@ fm = [
|
|
|
88
88
|
"pandas",
|
|
89
89
|
"pillow",
|
|
90
90
|
"rich",
|
|
91
|
-
"hs2p[asap,cucim,openslide,sam2,vips]>=4.0.
|
|
91
|
+
"hs2p[asap,cucim,openslide,sam2,vips]>=4.0.8",
|
|
92
92
|
"wandb",
|
|
93
93
|
"torch>=2.3,<2.8",
|
|
94
94
|
"torchvision>=0.18.0",
|
|
@@ -164,7 +164,7 @@ no_implicit_reexport = true
|
|
|
164
164
|
max-line-length = 160
|
|
165
165
|
|
|
166
166
|
[tool.bumpver]
|
|
167
|
-
current_version = "4.6.
|
|
167
|
+
current_version = "4.6.2"
|
|
168
168
|
version_pattern = "MAJOR.MINOR.PATCH"
|
|
169
169
|
commit = false # We do version bumping in CI, not as a commit
|
|
170
170
|
tag = false # Git tag already exists — we don't auto-tag
|