slide2vec 4.0.3__tar.gz → 4.0.4__tar.gz

{slide2vec-4.0.3 → slide2vec-4.0.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 4.0.3
+Version: 4.0.4
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0

{slide2vec-4.0.3 → slide2vec-4.0.4}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "slide2vec"
-version = "4.0.3"
+version = "4.0.4"
 description = "Embedding of whole slide images with Foundation Models"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -154,7 +154,7 @@ no_implicit_reexport = true
 max-line-length = 160
 
 [tool.bumpver]
-current_version = "4.0.3"
+current_version = "4.0.4"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false       # We do version bumping in CI, not as a commit
 tag = false          # Git tag already exists — we don't auto-tag

{slide2vec-4.0.3 → slide2vec-4.0.4}/slide2vec/__init__.py

@@ -2,7 +2,7 @@ from slide2vec.api import EmbeddedSlide, ExecutionOptions, Model, Pipeline, Prep
 from slide2vec.artifacts import HierarchicalEmbeddingArtifact, SlideEmbeddingArtifact, TileEmbeddingArtifact
 
 
-__version__ = "4.0.3"
+__version__ = "4.0.4"
 
 __all__ = [
     "Model",

{slide2vec-4.0.3 → slide2vec-4.0.4}/slide2vec/inference.py

@@ -2261,11 +2261,12 @@ def _should_persist_tile_embeddings(model, execution: ExecutionOptions) -> bool:
 
 
 def _resolved_process_list_output_variant(model) -> str | None:
+    requested_output_variant = getattr(model, "_output_variant", None)
     if not hasattr(model, "name") or model.name not in encoder_registry:
-        return model._output_variant if hasattr(model, "_output_variant") else None
+        return requested_output_variant
     resolved = resolve_encoder_output(
         model.name,
-        requested_output_variant=model._output_variant,
+        requested_output_variant=requested_output_variant,
     )
     return str(resolved["output_variant"])
 

{slide2vec-4.0.3 → slide2vec-4.0.4}/slide2vec.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: slide2vec
-Version: 4.0.3
+Version: 4.0.4
 Summary: Embedding of whole slide images with Foundation Models
 Author-email: Clément Grisi <clement.grisi@radboudumc.nl>
 License-Expression: Apache-2.0

{slide2vec-4.0.3 → slide2vec-4.0.4}/tests/test_regression_inference.py

@@ -176,6 +176,8 @@ def test_collect_distributed_pipeline_artifacts_runs_stage_collects_and_updates(
         persist_tile_embeddings,
         persist_hierarchical_embeddings,
         include_slide_embeddings,
+        encoder_name,
+        output_variant,
         tile_artifacts,
         hierarchical_artifacts,
         slide_artifacts,
@@ -186,6 +188,8 @@ def test_collect_distributed_pipeline_artifacts_runs_stage_collects_and_updates(
             "persist_tile_embeddings": persist_tile_embeddings,
             "persist_hierarchical_embeddings": persist_hierarchical_embeddings,
             "include_slide_embeddings": include_slide_embeddings,
+            "encoder_name": encoder_name,
+            "output_variant": output_variant,
             "tile_artifacts": tile_artifacts,
             "hierarchical_artifacts": hierarchical_artifacts,
             "slide_artifacts": slide_artifacts,
@@ -220,6 +224,8 @@ def test_collect_distributed_pipeline_artifacts_runs_stage_collects_and_updates(
     assert captured["update"]["persist_tile_embeddings"] is True
     assert captured["update"]["persist_hierarchical_embeddings"] is False
     assert captured["update"]["include_slide_embeddings"] is True
+    assert captured["update"]["encoder_name"] == "prism"
+    assert captured["update"]["output_variant"] == "default"
     assert captured["update"]["tile_artifacts"] == ["tile-artifact"]
     assert captured["update"]["hierarchical_artifacts"] == []
     assert captured["update"]["slide_artifacts"] == ["slide-artifact"]