sl-shared-assets 1.0.2__tar.gz → 1.1.0__tar.gz

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Files changed (46) hide show
  1. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/PKG-INFO +8 -4
  2. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/envs/slsa_dev_lin.yml +53 -50
  3. sl_shared_assets-1.1.0/envs/slsa_dev_lin_spec.txt +228 -0
  4. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/pyproject.toml +6 -3
  5. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/cli.py +11 -2
  6. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/cli.pyi +1 -0
  7. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/__init__.py +2 -0
  8. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/__init__.pyi +2 -0
  9. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/session_data.py +262 -10
  10. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/session_data.pyi +64 -5
  11. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/server.py +22 -0
  12. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/server.pyi +14 -0
  13. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/packaging_tools.py +10 -5
  14. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/project_management_tools.py +66 -50
  15. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/project_management_tools.pyi +4 -1
  16. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/tox.ini +13 -12
  17. sl_shared_assets-1.0.2/envs/slsa_dev_lin_spec.txt +0 -1811
  18. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/.gitignore +0 -0
  19. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/LICENSE +0 -0
  20. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/README.md +0 -0
  21. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/Makefile +0 -0
  22. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/make.bat +0 -0
  23. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/source/api.rst +0 -0
  24. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/source/conf.py +0 -0
  25. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/source/index.rst +0 -0
  26. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/docs/source/welcome.rst +0 -0
  27. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/__init__.py +0 -0
  28. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/__init__.pyi +0 -0
  29. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/configuration_data.py +0 -0
  30. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/configuration_data.pyi +0 -0
  31. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/runtime_data.py +0 -0
  32. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/runtime_data.pyi +0 -0
  33. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/surgery_data.py +0 -0
  34. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/surgery_data.pyi +0 -0
  35. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/py.typed +0 -0
  36. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/__init__.py +0 -0
  37. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/__init__.pyi +0 -0
  38. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/job.py +0 -0
  39. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/server/job.pyi +0 -0
  40. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/__init__.py +0 -0
  41. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/__init__.pyi +0 -0
  42. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/ascension_tools.py +0 -0
  43. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/ascension_tools.pyi +0 -0
  44. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/packaging_tools.pyi +0 -0
  45. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/transfer_tools.py +0 -0
  46. {sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/tools/transfer_tools.pyi +0 -0
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: sl-shared-assets
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- Version: 1.0.2
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+ Version: 1.1.0
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  Summary: Stores assets shared between multiple Sun (NeuroAI) lab data pipelines.
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  Project-URL: Homepage, https://github.com/Sun-Lab-NBB/sl-shared-assets
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  Project-URL: Documentation, https://sl-shared-assets-api-docs.netlify.app/
@@ -685,7 +685,7 @@ Keywords: acquisition,assets,data,processing,sunlab
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  Classifier: Development Status :: 5 - Production/Stable
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  Classifier: Intended Audience :: Developers
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  Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
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- Classifier: Operating System :: POSIX :: Linux
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+ Classifier: Operating System :: OS Independent
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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  Classifier: Programming Language :: Python :: 3.13
@@ -695,6 +695,7 @@ Requires-Dist: ataraxis-base-utilities<4,>=3
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  Requires-Dist: ataraxis-data-structures<4,>=3.1.1
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  Requires-Dist: ataraxis-time<4,>=3
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  Requires-Dist: click<9,>=8
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+ Requires-Dist: filelock<4,>=3
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  Requires-Dist: natsort<9,>=8
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  Requires-Dist: paramiko<4,>=3.5.1
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  Requires-Dist: polars<2,>=1
@@ -714,18 +715,20 @@ Requires-Dist: sphinx-rtd-theme<4,>=3; extra == 'conda'
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  Requires-Dist: sphinx<9,>=8; extra == 'conda'
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  Requires-Dist: twine<7,>=6; extra == 'conda'
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  Requires-Dist: types-appdirs<2,>=1; extra == 'conda'
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+ Requires-Dist: types-filelock<4,>=3; extra == 'conda'
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  Requires-Dist: types-paramiko<4,>=3; extra == 'conda'
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  Requires-Dist: types-tqdm<5,>=4; extra == 'conda'
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  Provides-Extra: condarun
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  Requires-Dist: appdirs<2,>=1; extra == 'condarun'
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  Requires-Dist: click<9,>=8; extra == 'condarun'
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+ Requires-Dist: filelock<4,>=3; extra == 'condarun'
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  Requires-Dist: natsort<9,>=8; extra == 'condarun'
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  Requires-Dist: paramiko<4,>=3.5.1; extra == 'condarun'
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  Requires-Dist: polars<2,>=1; extra == 'condarun'
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  Requires-Dist: pyarrow<21,>=20; extra == 'condarun'
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  Requires-Dist: tqdm<5,>=4; extra == 'condarun'
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  Provides-Extra: dev
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- Requires-Dist: ataraxis-automation<5,>=4; extra == 'dev'
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+ Requires-Dist: ataraxis-automation<6,>=5; extra == 'dev'
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  Requires-Dist: build<2,>=1; extra == 'dev'
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  Requires-Dist: grayskull<3,>=2; extra == 'dev'
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  Requires-Dist: hatchling<2,>=1; extra == 'dev'
@@ -741,11 +744,12 @@ Requires-Dist: tox-uv<2,>=1; extra == 'dev'
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  Requires-Dist: tox<5,>=4; extra == 'dev'
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  Requires-Dist: twine<7,>=6; extra == 'dev'
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  Requires-Dist: types-appdirs<2,>=1; extra == 'dev'
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+ Requires-Dist: types-filelock<4,>=3; extra == 'dev'
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  Requires-Dist: types-paramiko<4,>=3; extra == 'dev'
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  Requires-Dist: types-tqdm<5,>=4; extra == 'dev'
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  Requires-Dist: uv<1,>=0; extra == 'dev'
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  Provides-Extra: noconda
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- Requires-Dist: ataraxis-automation<5,>=4; extra == 'noconda'
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+ Requires-Dist: ataraxis-automation<6,>=5; extra == 'noconda'
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  Requires-Dist: build<2,>=1; extra == 'noconda'
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  Requires-Dist: sphinx-rtd-dark-mode<2,>=1; extra == 'noconda'
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  Requires-Dist: tox-uv<2,>=1; extra == 'noconda'
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/envs/slsa_dev_lin.yml RENAMED
@@ -7,19 +7,19 @@ dependencies:
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  - _python_abi3_support=1.0=hd8ed1ab_2
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  - alabaster=1.0.0=pyhd8ed1ab_1
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  - appdirs=1.4.4=pyhd8ed1ab_1
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- - aws-c-auth=0.9.0=h3318fae_10
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- - aws-c-cal=0.9.1=h5e3027f_0
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+ - aws-c-auth=0.9.0=h850fecd_12
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+ - aws-c-cal=0.9.2=h5e3027f_0
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  - aws-c-common=0.12.3=hb9d3cd8_0
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  - aws-c-compression=0.3.1=hafb2847_5
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  - aws-c-event-stream=0.5.4=haaa725d_10
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- - aws-c-http=0.10.1=hd7992d4_3
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- - aws-c-io=0.19.1=h93b6419_1
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- - aws-c-mqtt=0.13.0=h7b3935a_4
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- - aws-c-s3=0.8.0=h365f71b_1
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+ - aws-c-http=0.10.1=hcfde5e4_4
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+ - aws-c-io=0.19.1=hdfce8c9_3
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+ - aws-c-mqtt=0.13.1=h7b3935a_0
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+ - aws-c-s3=0.8.1=h670bddd_0
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  - aws-c-sdkutils=0.2.4=hafb2847_0
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  - aws-checksums=0.2.7=hafb2847_1
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- - aws-crt-cpp=0.32.6=h96107e3_3
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- - aws-sdk-cpp=1.11.510=hf282fd2_9
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+ - aws-crt-cpp=0.32.8=hdeb1b60_3
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+ - aws-sdk-cpp=1.11.510=h4607db7_10
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  - azure-core-cpp=1.14.0=h5cfcd09_0
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  - azure-identity-cpp=1.10.0=h113e628_0
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  - azure-storage-blobs-cpp=12.13.0=h3cf044e_1
@@ -28,9 +28,9 @@ dependencies:
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  - babel=2.17.0=pyhd8ed1ab_0
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  - backports=1.0=pyhd8ed1ab_5
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  - backports.tarfile=1.2.0=pyhd8ed1ab_1
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- - bcrypt=4.3.0=py313h920b4c0_0
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+ - bcrypt=4.3.0=py313h4b2b08d_1
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  - beautifulsoup4=4.13.4=pyha770c72_0
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- - brotli-python=1.1.0=py313h46c70d0_2
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+ - brotli-python=1.1.0=py313h46c70d0_3
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  - bzip2=1.0.8=h4bc722e_7
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  - c-ares=1.34.5=hb9d3cd8_0
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  - ca-certificates=2025.4.26=hbd8a1cb_0
@@ -44,7 +44,7 @@ dependencies:
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  - colorama=0.4.6=pyhd8ed1ab_1
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  - conda-souschef=2.2.3=pyhd8ed1ab_0
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  - cpython=3.13.3=py313hd8ed1ab_101
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- - cryptography=45.0.3=py313h6556f6e_0
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+ - cryptography=45.0.4=py313h6556f6e_0
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  - dbus=1.16.2=h3c4dab8_0
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  - distlib=0.3.9=pyhd8ed1ab_1
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  - docutils=0.21.2=pyhd8ed1ab_1
@@ -74,17 +74,17 @@ dependencies:
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  - krb5=1.21.3=h659f571_0
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  - ld_impl_linux-64=2.43=h712a8e2_4
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  - libabseil=20250127.1=cxx17_hbbce691_0
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- - libarrow=20.0.0=h9b1bdb9_4_cpu
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- - libarrow-acero=20.0.0=hcb10f89_4_cpu
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- - libarrow-dataset=20.0.0=hcb10f89_4_cpu
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- - libarrow-substrait=20.0.0=h1bed206_4_cpu
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+ - libarrow=20.0.0=h314c690_6_cpu
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+ - libarrow-acero=20.0.0=hcb10f89_6_cpu
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+ - libarrow-dataset=20.0.0=hcb10f89_6_cpu
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+ - libarrow-substrait=20.0.0=h1bed206_6_cpu
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  - libblas=3.9.0=31_h59b9bed_openblas
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- - libbrotlicommon=1.1.0=hb9d3cd8_2
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- - libbrotlidec=1.1.0=hb9d3cd8_2
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- - libbrotlienc=1.1.0=hb9d3cd8_2
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+ - libbrotlicommon=1.1.0=hb9d3cd8_3
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+ - libbrotlidec=1.1.0=hb9d3cd8_3
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+ - libbrotlienc=1.1.0=hb9d3cd8_3
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+ - libcurl=8.14.1=h332b0f4_0
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@@ -101,17 +101,17 @@ dependencies:
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- - libopentelemetry-cpp-headers=1.20.0=ha770c72_0
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- - libparquet=20.0.0=h081d1f1_4_cpu
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+ - libopentelemetry-cpp=1.21.0=hd1b1c89_0
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+ - libopentelemetry-cpp-headers=1.21.0=ha770c72_0
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+ - libparquet=20.0.0=h081d1f1_6_cpu
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  - libprotobuf=5.29.3=h501fc15_1
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  - libre2-11=2024.07.02=hba17884_3
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  - libsodium=1.0.20=h4ab18f5_0
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- - libsqlite=3.50.0=hee588c1_0
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+ - libsqlite=3.50.1=hee588c1_0
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  - libssh2=1.11.1=hcf80075_0
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@@ -131,7 +131,7 @@ dependencies:
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  - ncurses=6.5=h2d0b736_3
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  - nh3=0.2.21=py39h77e2912_1
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  - nlohmann_json=3.12.0=h3f2d84a_0
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  - openssl=3.5.0=h7b32b05_1
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  - prometheus-cpp=1.3.0=ha5d0236_0
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@@ -162,18 +163,18 @@ dependencies:
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- - types-requests=2.32.0.20250515=pyhd8ed1ab_0
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+ - typing-extensions=4.14.0=h32cad80_0
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+ - typing_extensions=4.14.0=pyhe01879c_0
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  - urllib3=2.4.0=pyhd8ed1ab_0
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+ - uv=0.7.12=h2f11bb8_0
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213
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214
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215
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232
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+ https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda
172
+ https://conda.anaconda.org/conda-forge/noarch/readme_renderer-44.0-pyhd8ed1ab_1.conda
173
+ https://conda.anaconda.org/conda-forge/noarch/requests-2.32.4-pyhd8ed1ab_0.conda
174
+ https://conda.anaconda.org/conda-forge/noarch/requests-toolbelt-1.0.0-pyhd8ed1ab_1.conda
175
+ https://conda.anaconda.org/conda-forge/noarch/rfc3986-2.0.0-pyhd8ed1ab_1.conda
176
+ https://conda.anaconda.org/conda-forge/noarch/rich-14.0.0-pyh29332c3_0.conda
177
+ https://conda.anaconda.org/conda-forge/noarch/roman-numerals-py-3.1.0-pyhd8ed1ab_0.conda
178
+ https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml-0.18.14-py313h536fd9c_0.conda
179
+ https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml.clib-0.2.8-py313h536fd9c_1.conda
180
+ https://conda.anaconda.org/conda-forge/noarch/ruamel.yaml.jinja2-0.2.7-pyhd8ed1ab_1.conda
181
+ https://conda.anaconda.org/conda-forge/linux-64/ruff-0.11.13-py313h67f39b2_0.conda
182
+ https://conda.anaconda.org/conda-forge/linux-64/s2n-1.5.21-h7ab7c64_0.conda
183
+ https://conda.anaconda.org/conda-forge/linux-64/secretstorage-3.3.3-py313h78bf25f_3.conda
184
+ https://conda.anaconda.org/conda-forge/noarch/setuptools-80.9.0-pyhff2d567_0.conda
185
+
186
+ https://conda.anaconda.org/conda-forge/noarch/six-1.17.0-pyhd8ed1ab_0.conda
187
+
188
+ https://conda.anaconda.org/conda-forge/linux-64/snappy-1.2.1-h8bd8927_1.conda
189
+ https://conda.anaconda.org/conda-forge/noarch/snowballstemmer-3.0.1-pyhd8ed1ab_0.conda
190
+ https://conda.anaconda.org/conda-forge/noarch/soupsieve-2.7-pyhd8ed1ab_0.conda
191
+ https://conda.anaconda.org/conda-forge/noarch/sphinx-8.2.3-pyhd8ed1ab_0.conda
192
+ https://conda.anaconda.org/conda-forge/noarch/sphinx-autodoc-typehints-3.2.0-pyhd8ed1ab_0.conda
193
+ https://conda.anaconda.org/conda-forge/noarch/sphinx-click-6.0.0-pyhd8ed1ab_1.conda
194
+
195
+ https://conda.anaconda.org/conda-forge/noarch/sphinx-rtd-theme-3.0.1-hd8ed1ab_0.conda
196
+ https://conda.anaconda.org/conda-forge/noarch/sphinx_rtd_theme-3.0.1-pyha770c72_0.conda
197
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-applehelp-2.0.0-pyhd8ed1ab_1.conda
198
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-devhelp-2.0.0-pyhd8ed1ab_1.conda
199
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.1.0-pyhd8ed1ab_1.conda
200
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-jquery-4.1-pyhd8ed1ab_1.conda
201
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_1.conda
202
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-2.0.0-pyhd8ed1ab_1.conda
203
+ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_1.conda
204
+ https://conda.anaconda.org/conda-forge/noarch/stdlib-list-0.11.1-pyhd8ed1ab_0.conda
205
+ https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_hd72426e_102.conda
206
+ https://conda.anaconda.org/conda-forge/noarch/tomli-2.2.1-pyhd8ed1ab_1.conda
207
+ https://conda.anaconda.org/conda-forge/noarch/tomli-w-1.2.0-pyhd8ed1ab_0.conda
208
+ https://conda.anaconda.org/conda-forge/noarch/tox-4.26.0-pyhe01879c_0.conda
209
+
210
+ https://conda.anaconda.org/conda-forge/noarch/tqdm-4.67.1-pyhd8ed1ab_1.conda
211
+ https://conda.anaconda.org/conda-forge/noarch/trove-classifiers-2025.5.9.12-pyhd8ed1ab_0.conda
212
+ https://conda.anaconda.org/conda-forge/noarch/twine-6.1.0-pyh29332c3_0.conda
213
+ https://conda.anaconda.org/conda-forge/noarch/types-appdirs-1.4.3.5-pyhd8ed1ab_1.conda
214
+ https://conda.anaconda.org/conda-forge/noarch/types-filelock-3.2.7-pyhd8ed1ab_1.conda
215
+ https://conda.anaconda.org/conda-forge/noarch/types-paramiko-3.5.0.20250516-pyhd8ed1ab_0.conda
216
+ https://conda.anaconda.org/conda-forge/noarch/types-requests-2.32.0.20250602-pyhd8ed1ab_0.conda
217
+ https://conda.anaconda.org/conda-forge/noarch/types-tqdm-4.67.0.20250516-pyhd8ed1ab_0.conda
218
+ https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.14.0-h32cad80_0.conda
219
+ https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.14.0-pyhe01879c_0.conda
220
+ https://conda.anaconda.org/conda-forge/noarch/tzdata-2025b-h78e105d_0.conda
221
+ https://conda.anaconda.org/conda-forge/noarch/urllib3-2.4.0-pyhd8ed1ab_0.conda
222
+ https://conda.anaconda.org/conda-forge/linux-64/uv-0.7.12-h2f11bb8_0.conda
223
+ https://conda.anaconda.org/conda-forge/noarch/virtualenv-20.31.2-pyhd8ed1ab_0.conda
224
+
225
+ https://conda.anaconda.org/conda-forge/noarch/zipp-3.23.0-pyhd8ed1ab_0.conda
226
+ https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.1-hb9d3cd8_2.conda
227
+ https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.23.0-py313h536fd9c_2.conda
228
+ https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/pyproject.toml RENAMED
@@ -8,7 +8,7 @@ build-backend = "hatchling.build"
8
8
  # Project metdata section. Provides the genral ID information about the project.
9
9
  [project]
10
10
  name = "sl-shared-assets"
11
- version = "1.0.2"
11
+ version = "1.1.0"
12
12
  description = "Stores assets shared between multiple Sun (NeuroAI) lab data pipelines."
13
13
  readme = "README.md"
14
14
  license = { file = "LICENSE" }
@@ -37,7 +37,7 @@ classifiers = [
37
37
  "Programming Language :: Python :: 3.12",
38
38
  "Programming Language :: Python :: 3.13",
39
39
  # Supported OS systems
40
- "Operating System :: POSIX :: Linux",
40
+ "Operating System :: OS Independent",
41
41
  ]
42
42
 
43
43
  # Runtime project dependencies. This overlaps with the 'condarun' optional list.
@@ -54,6 +54,7 @@ dependencies = [
54
54
  "natsort>=8,<9",
55
55
  "polars>=1,<2",
56
56
  "pyarrow>=20,<21",
57
+ "filelock>=3,<4",
57
58
  ]
58
59
 
59
60
  [project.urls]
@@ -75,6 +76,7 @@ condarun = [
75
76
  "natsort>=8,<9",
76
77
  "polars>=1,<2",
77
78
  "pyarrow>=20,<21",
79
+ "filelock>=3,<4",
78
80
  ]
79
81
 
80
82
  # Dependencies known to be installable with conda for all development platforms (OSX ARM64, WIN AMD64, LIN AMD64).
@@ -101,6 +103,7 @@ conda = [
101
103
  "types-appdirs>=1,<2",
102
104
  "types-tqdm>=4,<5",
103
105
  "types-paramiko>=3,<4",
106
+ "types-filelock>=3,<4"
104
107
  ]
105
108
 
106
109
  # Dependencies known to not be installable with conda for at least one supported development platform
@@ -118,7 +121,7 @@ noconda = [
118
121
  "build>=1,<2",
119
122
 
120
123
  # Automation
121
- "ataraxis-automation>=4,<5",
124
+ "ataraxis-automation>=5,<6",
122
125
  ]
123
126
 
124
127
  # A shorthand specification that installs tox and all packages required for development tasks. This specification can
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/cli.py RENAMED
@@ -10,6 +10,7 @@ from .server import generate_server_credentials
10
10
  from .data_classes import (
11
11
  SessionData,
12
12
  ExperimentState,
13
+ ProcessingTracker,
13
14
  ProjectConfiguration,
14
15
  MesoscopeSystemConfiguration,
15
16
  MesoscopeExperimentConfiguration,
@@ -65,6 +66,7 @@ def verify_session_integrity(session_path: str, create_processed_directories: bo
65
66
  processed session. This use case is fully automated and should not be triggered manually by the user.
66
67
  """
67
68
  session = Path(session_path)
69
+ session_data = SessionData.load(session_path=session)
68
70
 
69
71
  # Runs the verification process
70
72
  verify_session_checksum(
@@ -72,10 +74,12 @@ def verify_session_integrity(session_path: str, create_processed_directories: bo
72
74
  )
73
75
 
74
76
  # Checks the outcome of the verification process
75
- session_data = SessionData.load(session_path=session)
76
- if session_data.raw_data.verified_bin_path.exists():
77
+ tracker = ProcessingTracker(file_path=session_data.raw_data.integrity_verification_tracker_path)
78
+ if tracker.is_complete:
79
+ # noinspection PyTypeChecker
77
80
  console.echo(message=f"Session {session.stem} raw data integrity: Verified.", level=LogLevel.SUCCESS)
78
81
  else:
82
+ # noinspection PyTypeChecker
79
83
  console.echo(message=f"Session {session.stem} raw data integrity: Compromised!", level=LogLevel.ERROR)
80
84
 
81
85
 
@@ -120,6 +124,7 @@ def generate_project_manifest_file(
120
124
  output_directory=Path(output_directory),
121
125
  processed_project_directory=Path(project_processed_path) if project_processed_path else None,
122
126
  )
127
+ # noinspection PyTypeChecker
123
128
  console.echo(message=f"Project {Path(project_path).stem} data manifest file: generated.", level=LogLevel.SUCCESS)
124
129
 
125
130
 
@@ -177,6 +182,7 @@ def generate_system_configuration_file(output_directory: str, acquisition_system
177
182
  f"Mesoscope-VR system configuration file: generated. Edit the configuration parameters stored inside the "
178
183
  f"{file_name} file to match the state of the acquisition system and use context."
179
184
  )
185
+ # noinspection PyTypeChecker
180
186
  console.echo(message=message, level=LogLevel.SUCCESS)
181
187
 
182
188
  # For unsupported system types, raises an error message
@@ -234,6 +240,7 @@ def generate_server_credentials_file(output_directory: str, host: str, username:
234
240
  f"Server access credentials file: generated. If necessary, remember to edit the data acquisition system "
235
241
  f"configuration file to include the path to the credentials file generated via this CLI."
236
242
  )
243
+ # noinspection PyTypeChecker
237
244
  console.echo(message=message, level=LogLevel.SUCCESS)
238
245
 
239
246
 
@@ -284,6 +291,7 @@ def generate_project_configuration_file(project: str, surgery_log_id: str, water
284
291
  project_name=project, surgery_sheet_id=surgery_log_id, water_log_sheet_id=water_restriction_log_id
285
292
  )
286
293
  configuration.save(path=file_path.joinpath())
294
+ # noinspection PyTypeChecker
287
295
  console.echo(message=f"Project {project} data structure and configuration file: generated.", level=LogLevel.SUCCESS)
288
296
 
289
297
 
@@ -360,6 +368,7 @@ def generate_experiment_configuration_file(project: str, experiment: str, state_
360
368
  raise ValueError(message) # Fall-back to appease mypy, should not be reachable
361
369
 
362
370
  experiment_configuration.to_yaml(file_path=file_path)
371
+ # noinspection PyTypeChecker
363
372
  console.echo(message=f"Experiment {experiment} configuration file: generated.", level=LogLevel.SUCCESS)
364
373
 
365
374
 
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/cli.pyi RENAMED
@@ -9,6 +9,7 @@ from .server import generate_server_credentials as generate_server_credentials
9
9
  from .data_classes import (
10
10
  SessionData as SessionData,
11
11
  ExperimentState as ExperimentState,
12
+ ProcessingTracker as ProcessingTracker,
12
13
  ProjectConfiguration as ProjectConfiguration,
13
14
  MesoscopeSystemConfiguration as MesoscopeSystemConfiguration,
14
15
  MesoscopeExperimentConfiguration as MesoscopeExperimentConfiguration,
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/__init__.py RENAMED
@@ -15,6 +15,7 @@ from .session_data import (
15
15
  RawData,
16
16
  SessionData,
17
17
  ProcessedData,
18
+ ProcessingTracker,
18
19
  ProjectConfiguration,
19
20
  )
20
21
  from .surgery_data import (
@@ -63,4 +64,5 @@ __all__ = [
63
64
  "MesoscopeCameras",
64
65
  "MesoscopeMicroControllers",
65
66
  "MesoscopeAdditionalFirmware",
67
+ "ProcessingTracker",
66
68
  ]
{sl_shared_assets-1.0.2 → sl_shared_assets-1.1.0}/src/sl_shared_assets/data_classes/__init__.pyi RENAMED
@@ -10,6 +10,7 @@ from .session_data import (
10
10
  RawData as RawData,
11
11
  SessionData as SessionData,
12
12
  ProcessedData as ProcessedData,
13
+ ProcessingTracker as ProcessingTracker,
13
14
  ProjectConfiguration as ProjectConfiguration,
14
15
  )
15
16
  from .surgery_data import (
@@ -58,4 +59,5 @@ __all__ = [
58
59
  "MesoscopeCameras",
59
60
  "MesoscopeMicroControllers",
60
61
  "MesoscopeAdditionalFirmware",
62
+ "ProcessingTracker",
61
63
  ]