sl-shared-assets 1.0.0rc23__tar.gz → 1.0.0rc25__tar.gz

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sl-shared-assets
-Version: 1.0.0rc23
+Version: 1.0.0rc25
 Summary: Stores assets shared between multiple Sun (NeuroAI) lab data pipelines.
 Project-URL: Homepage, https://github.com/Sun-Lab-NBB/sl-shared-assets
 Project-URL: Documentation, https://sl-shared-assets-api-docs.netlify.app/

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/pyproject.toml

@@ -8,7 +8,7 @@ build-backend = "hatchling.build"
 # Project metdata section. Provides the genral ID information about the project.
 [project]
 name = "sl-shared-assets"
-version = "1.0.0rc23"
+version = "1.0.0rc25"
 description = "Stores assets shared between multiple Sun (NeuroAI) lab data pipelines."
 readme = "README.md"
 license = { file = "LICENSE" }

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/src/sl_shared_assets/data_classes/configuration_data.py

@@ -114,6 +114,9 @@ class MesoscopePaths:
     server_processed_data_root: Path = Path("/workdir/sun_data")
     """The absolute path to the BioHPC server directory used to store the processed data from all Sun lab projects. 
     This path is relative to the server root and is only used when submitting remote jobs to the server."""
+    server_raw_data_root: Path = Path("/storage/sun_data")
+    """The absolute path to the BioHPC server directory used to store the raw data from all Sun lab projects. 
+    This path is relative to the server root and is only used when submitting remote jobs to the server."""
 
 
 @dataclass()
@@ -302,6 +305,7 @@ class MesoscopeSystemConfiguration(YamlConfig):
         self.paths.mesoscope_directory = Path(self.paths.mesoscope_directory)
         self.paths.harvesters_cti_path = Path(self.paths.harvesters_cti_path)
         self.paths.server_processed_data_root = Path(self.paths.server_processed_data_root)
+        self.paths.server_raw_data_root = Path(self.paths.server_raw_data_root)
 
         # Converts valve_calibration data from dictionary to a tuple of tuples format
         if not isinstance(self.microcontrollers.valve_calibration_data, tuple):
@@ -351,6 +355,7 @@ class MesoscopeSystemConfiguration(YamlConfig):
         original.paths.mesoscope_directory = str(original.paths.mesoscope_directory)  # type: ignore
         original.paths.harvesters_cti_path = str(original.paths.harvesters_cti_path)  # type: ignore
         original.paths.server_processed_data_root = str(original.paths.server_processed_data_root)  # type: ignore
+        original.paths.server_raw_data_root = str(original.paths.server_raw_data_root)  # type: ignore
 
         # Converts valve calibration data into dictionary format
         if isinstance(original.microcontrollers.valve_calibration_data, tuple):

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/src/sl_shared_assets/data_classes/configuration_data.pyi

@@ -59,6 +59,7 @@ class MesoscopePaths:
     mesoscope_directory: Path = ...
     harvesters_cti_path: Path = ...
     server_processed_data_root: Path = ...
+    server_raw_data_root: Path = ...
 
 @dataclass()
 class MesoscopeCameras:

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/src/sl_shared_assets/data_classes/session_data.py

@@ -381,6 +381,14 @@ class SessionData(YamlConfig):
     """Stores the paths to all subfolders and files found under the /project/animal/session/processed_data directory of 
     any PC used to work with Sun lab data."""
 
+    def __post_init__(self) -> None:
+        """Ensures raw_data and processed_data are always instances of RawData and ProcessedData."""
+        if not isinstance(self.raw_data, RawData):
+            self._raw_data = RawData()
+
+        if not isinstance(self.processed_data, ProcessedData):
+            self._processed_data = ProcessedData()
+
     @classmethod
     def create(
         cls,

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/src/sl_shared_assets/data_classes/session_data.pyi

@@ -172,6 +172,10 @@ class SessionData(YamlConfig):
     experiment_name: str | None
     raw_data: RawData = field(default_factory=Incomplete)
     processed_data: ProcessedData = field(default_factory=Incomplete)
+    _raw_data = ...
+    _processed_data = ...
+    def __post_init__(self) -> None:
+        """Ensures raw_data and processed_data are always instances of RawData and ProcessedData."""
     @classmethod
     def create(
         cls,

{sl_shared_assets-1.0.0rc23 → sl_shared_assets-1.0.0rc25}/src/sl_shared_assets/server/server.py

@@ -162,7 +162,7 @@ class Server:
         # If batch_job is not in the output received from SLURM in response to issuing the submission command, raises an
         # error.
         if "Submitted batch job" not in job_output:
-            message = f"Failed to submit the {job.job_name} job to the BioHPC cluster."
+            message = f"Failed to submit the '{job.job_name}' job to the BioHPC cluster."
             console.error(message, RuntimeError)
 
             # Fallback to appease mypy, should not be reachable