sinter 1.14.dev1718079560__tar.gz → 1.14.dev1719295897__tar.gz
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- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/PKG-INFO +1 -1
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/setup.py +1 -1
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/__init__.py +1 -1
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_probability_util.py +21 -5
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/PKG-INFO +1 -1
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/README.md +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/readme_example_plot.png +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/requirements.txt +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/setup.cfg +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_anon_task_stats.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_anon_task_stats_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection_options.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection_options_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection_tracker_for_single_task.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_collection_work_manager.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_csv_out.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_all_built_in_decoders.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_decoder_class.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_fusion_blossom.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_pymatching.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_decoding_vacuous.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_existing_data.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_existing_data_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_collect.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_collect_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_combine.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_combine_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_plot.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_plot_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_predict.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_main_predict_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_plotting.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_plotting_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_predict.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_predict_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_printer.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_probability_util_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_task.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_task_stats.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_task_stats_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_task_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_worker.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter/_worker_test.py +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/SOURCES.txt +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/dependency_links.txt +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/entry_points.txt +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/requires.txt +0 -0
- {sinter-1.14.dev1718079560 → sinter-1.14.dev1719295897}/src/sinter.egg-info/top_level.txt +0 -0
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@@ -7,7 +7,16 @@ import numpy as np
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if TYPE_CHECKING:
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import sinter
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# Go on a magical journey looking for scipy's linear regression type.
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try:
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from scipy.stats._stats_py import LinregressResult
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except ImportError:
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try:
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from scipy.stats._stats_mstats_common import LinregressResult
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except ImportError:
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from scipy.stats import linregress
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LinregressResult = type(linregress([0, 1], [0, 1]))
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def log_binomial(*, p: Union[float, np.ndarray], n: int, hits: int) -> np.ndarray:
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@@ -64,8 +73,8 @@ def log_binomial(*, p: Union[float, np.ndarray], n: int, hits: int) -> np.ndarra
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result[p_clipped == 1] = -np.inf
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# Multiply p**hits and (1-p)**misses onto the total, in log space.
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result[p_clipped != 0] += np.log(p_clipped[p_clipped != 0]) * hits
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result[p_clipped != 1] += np.log1p(-p_clipped[p_clipped != 1]) * misses
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result[p_clipped != 0] += np.log(p_clipped[p_clipped != 0]) * float(hits)
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result[p_clipped != 1] += np.log1p(-p_clipped[p_clipped != 1]) * float(misses)
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# Multiply (n choose hits) onto the total, in log space.
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log_n_choose_hits = log_factorial(n) - log_factorial(misses) - log_factorial(hits)
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@@ -150,7 +159,10 @@ def least_squares_cost(*, xs: np.ndarray, ys: np.ndarray, intercept: float, slop
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def least_squares_through_point(*, xs: np.ndarray, ys: np.ndarray, required_x: float, required_y: float) -> 'LinregressResult':
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# Local import to reduce initial cost of importing sinter.
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from scipy.optimize import leastsq
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from scipy.stats
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from scipy.stats import linregress
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# HACK: get scipy's linear regression result type
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LinregressResult = type(linregress([0, 1], [0, 1]))
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xs2 = xs - required_x
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ys2 = ys - required_y
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# Local import to reduce initial cost of importing sinter.
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from scipy.optimize import leastsq
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# HACK: get scipy's linear regression result type
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from scipy.stats import linregress
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LinregressResult = type(linregress([0, 1], [0, 1]))
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(best_intercept,), _ = leastsq(func=err, x0=0.0)
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return LinregressResult(required_slope, best_intercept, None, None, None, intercept_stderr=False)
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