simcortexpp 0.1.4__tar.gz → 0.1.5__tar.gz

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Files changed (50) hide show
  1. {simcortexpp-0.1.4/src/simcortexpp.egg-info → simcortexpp-0.1.5}/PKG-INFO +5 -3
  2. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/README.md +1 -1
  3. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/pyproject.toml +10 -16
  4. {simcortexpp-0.1.4 → simcortexpp-0.1.5/src/simcortexpp.egg-info}/PKG-INFO +5 -3
  5. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/LICENSE +0 -0
  6. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/setup.cfg +0 -0
  7. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/__init__.py +0 -0
  8. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/cli/__init__.py +0 -0
  9. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/cli/main.py +0 -0
  10. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/__init__.py +0 -0
  11. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/deform/__init__.py +0 -0
  12. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/deform/eval.yaml +0 -0
  13. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/deform/inference.yaml +0 -0
  14. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/deform/train.yaml +0 -0
  15. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/initsurf/__init__.py +0 -0
  16. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/initsurf/generate.yaml +0 -0
  17. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/seg/__init__.py +0 -0
  18. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/seg/eval.yaml +0 -0
  19. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/seg/inference.yaml +0 -0
  20. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/configs/seg/train.yaml +0 -0
  21. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/__init__.py +0 -0
  22. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/data/__init__.py +0 -0
  23. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/data/dataloader.py +0 -0
  24. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/eval.py +0 -0
  25. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/inference.py +0 -0
  26. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/models/__init__.py +0 -0
  27. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/models/surfdeform.py +0 -0
  28. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/train.py +0 -0
  29. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/utils/__init__.py +0 -0
  30. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/deform/utils/coords.py +0 -0
  31. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/initsurf/__init__.py +0 -0
  32. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/initsurf/generate.py +0 -0
  33. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/initsurf/paths.py +0 -0
  34. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/preproc/__init__.py +0 -0
  35. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/preproc/fs_to_mni.py +0 -0
  36. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/__init__.py +0 -0
  37. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/data/__init__.py +0 -0
  38. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/data/dataloader.py +0 -0
  39. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/eval.py +0 -0
  40. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/inference.py +0 -0
  41. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/models/__init__.py +0 -0
  42. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/models/unet.py +0 -0
  43. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/seg/train.py +0 -0
  44. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/utils/__init__.py +0 -0
  45. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp/utils/tca.py +0 -0
  46. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp.egg-info/SOURCES.txt +0 -0
  47. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp.egg-info/dependency_links.txt +0 -0
  48. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp.egg-info/entry_points.txt +0 -0
  49. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp.egg-info/requires.txt +0 -0
  50. {simcortexpp-0.1.4 → simcortexpp-0.1.5}/src/simcortexpp.egg-info/top_level.txt +0 -0
{simcortexpp-0.1.4/src/simcortexpp.egg-info → simcortexpp-0.1.5}/PKG-INFO RENAMED
@@ -1,7 +1,7 @@
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  Metadata-Version: 2.4
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  Name: simcortexpp
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- Version: 0.1.4
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- Summary: SimCortexPP (SCPP) A framework for cortical surface reconstruction
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+ Version: 0.1.5
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+ Summary: SimCortexPP is a modular framework for cortical surface reconstruction.
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  Author: Kaveh Moradkhani, Sylvain Bouix
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  License: Apache License
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  Version 2.0, January 2004
@@ -205,6 +205,8 @@ License: Apache License
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  See the License for the specific language governing permissions and
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  limitations under the License.
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+ Project-URL: Source Code, https://github.com/Neuro-iX/simcortexpp
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+ Project-URL: Lab Page, https://github.com/Neuro-iX
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  Classifier: License :: OSI Approved :: Apache Software License
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3 :: Only
@@ -232,7 +234,7 @@ Dynamic: license-file
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  # SimCortexPP (SCPP)
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- SimCortexPP (SCPP) A framework for cortical surface reconstruction in MNI space. It provides four stages:
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+ SimCortexPP (SCPP) is a modular framework for cortical surface reconstruction in MNI152 space. It provides four stages:
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  1. **Preprocessing (FreeSurfer to MNI152)**
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  Export key FreeSurfer volumes/surfaces, register them to MNI152, and write outputs in a **BIDS-derivatives-style** layout.
{simcortexpp-0.1.4 → simcortexpp-0.1.5}/README.md RENAMED
@@ -1,6 +1,6 @@
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  # SimCortexPP (SCPP)
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- SimCortexPP (SCPP) A framework for cortical surface reconstruction in MNI space. It provides four stages:
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+ SimCortexPP (SCPP) is a modular framework for cortical surface reconstruction in MNI152 space. It provides four stages:
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  1. **Preprocessing (FreeSurfer to MNI152)**
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  Export key FreeSurfer volumes/surfaces, register them to MNI152, and write outputs in a **BIDS-derivatives-style** layout.
{simcortexpp-0.1.4 → simcortexpp-0.1.5}/pyproject.toml RENAMED
@@ -4,8 +4,8 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "simcortexpp"
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- version = "0.1.4"
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- description = "SimCortexPP (SCPP) A framework for cortical surface reconstruction"
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+ version = "0.1.5"
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+ description = "SimCortexPP is a modular framework for cortical surface reconstruction."
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  readme = "README.md"
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  requires-python = ">=3.10"
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@@ -35,19 +35,14 @@ dependencies = [
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  "openpyxl>=3.1",
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  ]
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- [project.optional-dependencies]
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- seg = [
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- "monai>=1.3",
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- ]
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-
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- deform-metrics = [
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- "python-fcl",
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- "pymeshlab",
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- ]
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+ [project.urls]
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+ "Source Code" = "https://github.com/Neuro-iX/simcortexpp"
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+ "Lab Page" = "https://github.com/Neuro-iX"
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- torch = [
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- "torch>=2.0",
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- ]
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+ [project.optional-dependencies]
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+ seg = ["monai>=1.3"]
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+ deform-metrics = ["python-fcl", "pymeshlab"]
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+ torch = ["torch>=2.0"]
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  [project.scripts]
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  scpp = "simcortexpp.cli.main:app"
@@ -63,5 +58,4 @@ where = ["src"]
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  [tool.setuptools.package-data]
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  simcortexpp = [
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  "configs/**/*.yaml",
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- ]
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-
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+ ]
{simcortexpp-0.1.4 → simcortexpp-0.1.5/src/simcortexpp.egg-info}/PKG-INFO RENAMED
@@ -1,7 +1,7 @@
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  Metadata-Version: 2.4
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  Name: simcortexpp
3
- Version: 0.1.4
4
- Summary: SimCortexPP (SCPP) A framework for cortical surface reconstruction
3
+ Version: 0.1.5
4
+ Summary: SimCortexPP is a modular framework for cortical surface reconstruction.
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  Author: Kaveh Moradkhani, Sylvain Bouix
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  License: Apache License
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  Version 2.0, January 2004
@@ -205,6 +205,8 @@ License: Apache License
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  See the License for the specific language governing permissions and
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  limitations under the License.
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+ Project-URL: Source Code, https://github.com/Neuro-iX/simcortexpp
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+ Project-URL: Lab Page, https://github.com/Neuro-iX
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  Classifier: License :: OSI Approved :: Apache Software License
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3 :: Only
@@ -232,7 +234,7 @@ Dynamic: license-file
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  # SimCortexPP (SCPP)
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- SimCortexPP (SCPP) A framework for cortical surface reconstruction in MNI space. It provides four stages:
237
+ SimCortexPP (SCPP) is a modular framework for cortical surface reconstruction in MNI152 space. It provides four stages:
236
238
 
237
239
  1. **Preprocessing (FreeSurfer to MNI152)**
238
240
  Export key FreeSurfer volumes/surfaces, register them to MNI152, and write outputs in a **BIDS-derivatives-style** layout.
{simcortexpp-0.1.4 → simcortexpp-0.1.5}/LICENSE RENAMED
File without changes
{simcortexpp-0.1.4 → simcortexpp-0.1.5}/setup.cfg RENAMED
File without changes