simbiology-mcp 0.1.0__tar.gz

simbiology_mcp-0.1.0/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Yojith Sai Biradavolu and Sepanta Yalameha
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

simbiology_mcp-0.1.0/PKG-INFO

@@ -0,0 +1,246 @@
+Metadata-Version: 2.4
+Name: simbiology-mcp
+Version: 0.1.0
+Summary: Model Context Protocol server for MATLAB SimBiology: build, modify, simulate, and export systems-biology models from AI agents.
+Author-email: Yojith Sai Biradavolu <yojith23@gmail.com>, Sepanta Yalameha <sepantayalameha2006@gmail.com>
+Project-URL: Repository, https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP
+Project-URL: Issues, https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/issues
+Project-URL: Changelog, https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/blob/main/CHANGELOG.md
+Project-URL: Releases, https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/releases
+Keywords: mcp,simbiology,matlab,systems-biology,pk-pd,modeling
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: fastmcp<4,>=3.4
+Requires-Dist: httpx>=0.28
+Requires-Dist: python-dotenv>=1.2
+Requires-Dist: igem-registry-api>=0.1
+Requires-Dist: tomlkit>=0.13
+Provides-Extra: dev
+Requires-Dist: coverage>=7; extra == "dev"
+Requires-Dist: pytest>=8; extra == "dev"
+Provides-Extra: matlab
+Requires-Dist: matlabengine; extra == "matlab"
+Dynamic: license-file
+
+# SimBiology MCP Server
+
+[![PyPI](https://img.shields.io/pypi/v/simbiology-mcp?logo=pypi\&logoColor=white)](https://pypi.org/project/simbiology-mcp/)
+[![Python](https://img.shields.io/pypi/pyversions/simbiology-mcp?logo=python\&logoColor=white)](https://pypi.org/project/simbiology-mcp/)
+[![Tests](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/actions/workflows/test.yml?query=branch%3Amain)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE)
+[![MATLAB](https://img.shields.io/badge/MATLAB-R2024a%2B-orange)](https://www.mathworks.com/products/matlab.html)
+[![Platform](https://img.shields.io/badge/platform-Windows%20%7C%20macOS%20%7C%20Linux-blue)](#requirements)
+
+## Overview
+
+The SimBiology MCP Server is a Model Context Protocol (MCP) interface for MATLAB SimBiology, enabling programmatic control of biological modeling and simulation workflows from AI agents and external tools.
+
+It bridges large language model systems with MATLAB's SimBiology toolbox through the MATLAB Engine for Python, allowing automated creation, modification, and execution of computational biology models.
+
+---
+
+## Purpose
+
+SimBiology is a powerful environment for modeling biochemical and pharmacokinetic systems, but it is primarily MATLAB-driven and interactive.
+
+This MCP server provides a structured programmatic layer that:
+
+- Exposes SimBiology functionality as MCP tools
+- Enables automated model construction and simulation
+- Supports agent-driven workflows for systems biology
+- Removes the need for manual MATLAB interaction
+- Supports workflows such as building PK/PD models, modifying reactions and parameters, simulating time courses, exporting results, and pulling supporting context from PubMed and iGEM
+
+---
+
+## Installation
+
+Choose one way to install the Python package, then complete the common setup steps below.
+
+### 1. Manual repo checkout
+
+Use this when you want the full source tree locally, including the repo skill files and tests.
+
+```shell
+git clone https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP.git
+cd SIMBIOLOGY-MCP
+python -m venv .venv
+```
+
+Activate the virtual environment:
+
+```powershell
+# Windows PowerShell
+.\.venv\Scripts\Activate.ps1
+```
+
+```shell
+# macOS or Linux
+source .venv/bin/activate
+```
+
+```shell
+python -m pip install -e .
+```
+
+### 2. Recommended: `uv tool install`
+
+Use this when you want a cleaner install without cloning the repo.
+
+```powershell
+uv tool install simbiology-mcp
+```
+
+### 3. Plain `pip`
+
+Use this if you do not want `uv tool install`.
+
+```powershell
+python -m pip install simbiology-mcp
+```
+
+## Complete the setup
+
+The easiest option is the interactive setup. It installs the MATLAB Engine, configures an MCP client, and offers to install the matching skill:
+
+```powershell
+simbiology-mcp setup
+```
+
+For a fully interactive setup, follow the prompts to choose your MATLAB installation, client, configuration scope, and skill destination.
+
+For headless or engine-only setup, install the MATLAB Engine for Python from your local MATLAB installation:
+
+```powershell
+simbiology-mcp setup --skip-configure
+```
+
+If multiple MATLAB installations are found, select one interactively or pass an index:
+
+```powershell
+simbiology-mcp setup --matlab-index 0 --skip-configure
+```
+
+Configure an MCP client:
+
+```powershell
+simbiology-mcp configure --client cursor
+simbiology-mcp configure --client codex --project
+simbiology-mcp configure --list-clients
+```
+
+The configuration helper supports Claude Code, Cursor, Codex, Windsurf, GitHub Copilot CLI, and Visual Studio Code/GitHub Copilot. The user scope is the default; use `--project` for project-local configuration. Existing matching entries are left unchanged; use `--force` to replace a different existing entry.
+
+Install the synthetic biology modelling skill separately:
+
+```powershell
+simbiology-mcp get-skill --client codex
+```
+
+Use `--client`, `--project`, `--user`, or `--install-path` to choose a destination directly. Run `simbiology-mcp get-skill` without flags for the interactive picker.
+
+Add `--no-skill` to omit the skill installation.
+
+---
+
+## Requirements
+
+- MATLAB R2024a or later
+- SimBiology Toolbox installed
+- Python 3.12 or later
+- A MATLAB-supported Windows, macOS, or Linux environment
+- An MCP-compatible client; the configuration helper supports Claude Code, Cursor, Codex, Windsurf, GitHub Copilot CLI, and Visual Studio Code/GitHub Copilot
+
+---
+
+## Usage
+
+Once setup has configured the MCP server for your chosen agent, launch or restart that agent's client session. The client starts the server automatically when it connects to it; you do not need to run `start` manually.
+
+### Manual configuration and server start
+
+Use manual configuration only when your client is not supported by `configure`:
+
+Point your MCP client at the installed server executable. Use the absolute path so the client does not depend on your shell's `PATH`:
+
+```json
+{
+  "mcpServers": {
+    "simbiology": {
+      "command": "C:/absolute/path/to/simbiology-mcp.exe",
+      "args": ["start"]
+    }
+  }
+}
+```
+
+Alternatively, run the server directly from an activated repository environment:
+
+```powershell
+python -m simbiology_mcp start
+```
+
+The MATLAB engine starts lazily on the first tool call that needs it, so client startup stays fast.
+
+### External API keys
+
+PubMed works without a key but is rate-limited. To raise the limit, copy `.env.example` to `.env` and set `NCBI_API_KEY`.
+
+---
+
+## Tools
+
+The server exposes the following MCP tools:
+
+| Tool name | Description | Inputs | Outputs |
+| --- | --- | --- | --- |
+| `load_project`, `create_project`, `save_project` | Load, create, and persist SimBiology projects. | Project path, model name, save target. | Confirmation plus project/model metadata. |
+| `create_model`, `rename_model`, `remove_model`, `list_models` | Manage models inside the loaded project. | Model name or rename target. | Confirmation or model name lists. |
+| `create_compartment`, `modify_compartment`, `remove_compartment`, `list_compartments` | Manage compartments. | Names plus compartment properties such as capacity and units. | Confirmation or compartment data. |
+| `create_species`, `modify_species`, `remove_species`, `list_species` | Manage species. | Names plus species properties such as initial amount and units. | Confirmation or species data. |
+| `create_reaction`, `modify_reaction`, `remove_reaction`, `list_reactions` | Manage reactions and rate expressions. | Reactants, products, reversibility, rate law fields. | Confirmation or reaction data. |
+| `create_parameter`, `modify_parameter`, `remove_parameter`, `list_parameters` | Manage model parameters. | Names, values, units, and scope. | Confirmation or parameter data. |
+| `get_simulation_settings`, `configure_simulation`, `simulate_model` | Inspect, configure, and run simulations. | Solver/settings fields, optional `species`, `doses`, `variants`, and output limits. | Current settings or simulation result rows. |
+| `create_dose`, `modify_dose`, `remove_dose`, `list_doses` | Manage repeat and schedule doses. | Dose type, target, timing, amount/rate fields. Dose amounts use amount/mass units; dose rates use amount/time or mass/time units. | Confirmation or dose data. |
+| `create_variant`, `modify_variant`, `remove_variant`, `list_variants` | Manage named model overrides. | Variant name and full content entries. | Confirmation or variant data. |
+| `export_graph`, `export_csv` | Export the same run used by `simulate_model` to PNG or CSV. | Optional path plus optional `species`, `doses`, and `variants`. | File metadata or inline CSV text. |
+| `list_series`, `steady_state`, `series_min`, `series_max` | Analyze exported CSV data without rerunning MATLAB. | CSV path and target series name. | Series names or computed values. |
+| `pubmed_search`, `pubmed_summary`, `pubmed_article` | Pull literature context from PubMed. | Query, PubMed ID, and summary options. | Search hits, article details, or summaries. |
+| `igem_part`, `igem_search`, `igem_search_best` | Look up parts from the iGEM registry. | Exact identifier or free-text query. | Part records or ranked matches. |
+
+---
+
+## Project layout
+
+```text
+simbiology_mcp/
+├── core/        SimBiology session, per-model reads, and command builders
+├── engine/      Singleton MATLAB engine wrapper and error types
+├── tools/       MCP tool definitions and the shared registry
+├── external/    PubMed and iGEM API wrappers
+├── interfaces/  FastMCP server wiring
+├── scripts/     CLI helpers like setup, configure, and get-skill
+└── skills/      Packaged skill markdown
+examples/        Runnable demos (e.g. demo_simulation.py)
+tests/           Unit tests plus MATLAB/live integration tests
+```
+
+## Authors
+
+- [Yojith Sai Biradavolu](https://github.com/yojith)
+- [Sepanta Yalameha](https://github.com/Sepanta-Yalameha)
+
+Contributions, issues, and feature requests are welcome through the project’s [GitHub repository](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP).
+
+---
+
+## Development
+
+Run the hermetic test suite (no MATLAB or network required):
+
+```powershell
+py -m pytest -m "not matlab and not live"
+```
+
+`matlab` tests require a working MATLAB Engine install. `live` tests hit external APIs and run only with `--run-live`.

simbiology_mcp-0.1.0/README.md

@@ -0,0 +1,221 @@
+# SimBiology MCP Server
+
+[![PyPI](https://img.shields.io/pypi/v/simbiology-mcp?logo=pypi\&logoColor=white)](https://pypi.org/project/simbiology-mcp/)
+[![Python](https://img.shields.io/pypi/pyversions/simbiology-mcp?logo=python\&logoColor=white)](https://pypi.org/project/simbiology-mcp/)
+[![Tests](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/actions/workflows/test.yml?query=branch%3Amain)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](LICENSE)
+[![MATLAB](https://img.shields.io/badge/MATLAB-R2024a%2B-orange)](https://www.mathworks.com/products/matlab.html)
+[![Platform](https://img.shields.io/badge/platform-Windows%20%7C%20macOS%20%7C%20Linux-blue)](#requirements)
+
+## Overview
+
+The SimBiology MCP Server is a Model Context Protocol (MCP) interface for MATLAB SimBiology, enabling programmatic control of biological modeling and simulation workflows from AI agents and external tools.
+
+It bridges large language model systems with MATLAB's SimBiology toolbox through the MATLAB Engine for Python, allowing automated creation, modification, and execution of computational biology models.
+
+---
+
+## Purpose
+
+SimBiology is a powerful environment for modeling biochemical and pharmacokinetic systems, but it is primarily MATLAB-driven and interactive.
+
+This MCP server provides a structured programmatic layer that:
+
+- Exposes SimBiology functionality as MCP tools
+- Enables automated model construction and simulation
+- Supports agent-driven workflows for systems biology
+- Removes the need for manual MATLAB interaction
+- Supports workflows such as building PK/PD models, modifying reactions and parameters, simulating time courses, exporting results, and pulling supporting context from PubMed and iGEM
+
+---
+
+## Installation
+
+Choose one way to install the Python package, then complete the common setup steps below.
+
+### 1. Manual repo checkout
+
+Use this when you want the full source tree locally, including the repo skill files and tests.
+
+```shell
+git clone https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP.git
+cd SIMBIOLOGY-MCP
+python -m venv .venv
+```
+
+Activate the virtual environment:
+
+```powershell
+# Windows PowerShell
+.\.venv\Scripts\Activate.ps1
+```
+
+```shell
+# macOS or Linux
+source .venv/bin/activate
+```
+
+```shell
+python -m pip install -e .
+```
+
+### 2. Recommended: `uv tool install`
+
+Use this when you want a cleaner install without cloning the repo.
+
+```powershell
+uv tool install simbiology-mcp
+```
+
+### 3. Plain `pip`
+
+Use this if you do not want `uv tool install`.
+
+```powershell
+python -m pip install simbiology-mcp
+```
+
+## Complete the setup
+
+The easiest option is the interactive setup. It installs the MATLAB Engine, configures an MCP client, and offers to install the matching skill:
+
+```powershell
+simbiology-mcp setup
+```
+
+For a fully interactive setup, follow the prompts to choose your MATLAB installation, client, configuration scope, and skill destination.
+
+For headless or engine-only setup, install the MATLAB Engine for Python from your local MATLAB installation:
+
+```powershell
+simbiology-mcp setup --skip-configure
+```
+
+If multiple MATLAB installations are found, select one interactively or pass an index:
+
+```powershell
+simbiology-mcp setup --matlab-index 0 --skip-configure
+```
+
+Configure an MCP client:
+
+```powershell
+simbiology-mcp configure --client cursor
+simbiology-mcp configure --client codex --project
+simbiology-mcp configure --list-clients
+```
+
+The configuration helper supports Claude Code, Cursor, Codex, Windsurf, GitHub Copilot CLI, and Visual Studio Code/GitHub Copilot. The user scope is the default; use `--project` for project-local configuration. Existing matching entries are left unchanged; use `--force` to replace a different existing entry.
+
+Install the synthetic biology modelling skill separately:
+
+```powershell
+simbiology-mcp get-skill --client codex
+```
+
+Use `--client`, `--project`, `--user`, or `--install-path` to choose a destination directly. Run `simbiology-mcp get-skill` without flags for the interactive picker.
+
+Add `--no-skill` to omit the skill installation.
+
+---
+
+## Requirements
+
+- MATLAB R2024a or later
+- SimBiology Toolbox installed
+- Python 3.12 or later
+- A MATLAB-supported Windows, macOS, or Linux environment
+- An MCP-compatible client; the configuration helper supports Claude Code, Cursor, Codex, Windsurf, GitHub Copilot CLI, and Visual Studio Code/GitHub Copilot
+
+---
+
+## Usage
+
+Once setup has configured the MCP server for your chosen agent, launch or restart that agent's client session. The client starts the server automatically when it connects to it; you do not need to run `start` manually.
+
+### Manual configuration and server start
+
+Use manual configuration only when your client is not supported by `configure`:
+
+Point your MCP client at the installed server executable. Use the absolute path so the client does not depend on your shell's `PATH`:
+
+```json
+{
+  "mcpServers": {
+    "simbiology": {
+      "command": "C:/absolute/path/to/simbiology-mcp.exe",
+      "args": ["start"]
+    }
+  }
+}
+```
+
+Alternatively, run the server directly from an activated repository environment:
+
+```powershell
+python -m simbiology_mcp start
+```
+
+The MATLAB engine starts lazily on the first tool call that needs it, so client startup stays fast.
+
+### External API keys
+
+PubMed works without a key but is rate-limited. To raise the limit, copy `.env.example` to `.env` and set `NCBI_API_KEY`.
+
+---
+
+## Tools
+
+The server exposes the following MCP tools:
+
+| Tool name | Description | Inputs | Outputs |
+| --- | --- | --- | --- |
+| `load_project`, `create_project`, `save_project` | Load, create, and persist SimBiology projects. | Project path, model name, save target. | Confirmation plus project/model metadata. |
+| `create_model`, `rename_model`, `remove_model`, `list_models` | Manage models inside the loaded project. | Model name or rename target. | Confirmation or model name lists. |
+| `create_compartment`, `modify_compartment`, `remove_compartment`, `list_compartments` | Manage compartments. | Names plus compartment properties such as capacity and units. | Confirmation or compartment data. |
+| `create_species`, `modify_species`, `remove_species`, `list_species` | Manage species. | Names plus species properties such as initial amount and units. | Confirmation or species data. |
+| `create_reaction`, `modify_reaction`, `remove_reaction`, `list_reactions` | Manage reactions and rate expressions. | Reactants, products, reversibility, rate law fields. | Confirmation or reaction data. |
+| `create_parameter`, `modify_parameter`, `remove_parameter`, `list_parameters` | Manage model parameters. | Names, values, units, and scope. | Confirmation or parameter data. |
+| `get_simulation_settings`, `configure_simulation`, `simulate_model` | Inspect, configure, and run simulations. | Solver/settings fields, optional `species`, `doses`, `variants`, and output limits. | Current settings or simulation result rows. |
+| `create_dose`, `modify_dose`, `remove_dose`, `list_doses` | Manage repeat and schedule doses. | Dose type, target, timing, amount/rate fields. Dose amounts use amount/mass units; dose rates use amount/time or mass/time units. | Confirmation or dose data. |
+| `create_variant`, `modify_variant`, `remove_variant`, `list_variants` | Manage named model overrides. | Variant name and full content entries. | Confirmation or variant data. |
+| `export_graph`, `export_csv` | Export the same run used by `simulate_model` to PNG or CSV. | Optional path plus optional `species`, `doses`, and `variants`. | File metadata or inline CSV text. |
+| `list_series`, `steady_state`, `series_min`, `series_max` | Analyze exported CSV data without rerunning MATLAB. | CSV path and target series name. | Series names or computed values. |
+| `pubmed_search`, `pubmed_summary`, `pubmed_article` | Pull literature context from PubMed. | Query, PubMed ID, and summary options. | Search hits, article details, or summaries. |
+| `igem_part`, `igem_search`, `igem_search_best` | Look up parts from the iGEM registry. | Exact identifier or free-text query. | Part records or ranked matches. |
+
+---
+
+## Project layout
+
+```text
+simbiology_mcp/
+├── core/        SimBiology session, per-model reads, and command builders
+├── engine/      Singleton MATLAB engine wrapper and error types
+├── tools/       MCP tool definitions and the shared registry
+├── external/    PubMed and iGEM API wrappers
+├── interfaces/  FastMCP server wiring
+├── scripts/     CLI helpers like setup, configure, and get-skill
+└── skills/      Packaged skill markdown
+examples/        Runnable demos (e.g. demo_simulation.py)
+tests/           Unit tests plus MATLAB/live integration tests
+```
+
+## Authors
+
+- [Yojith Sai Biradavolu](https://github.com/yojith)
+- [Sepanta Yalameha](https://github.com/Sepanta-Yalameha)
+
+Contributions, issues, and feature requests are welcome through the project’s [GitHub repository](https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP).
+
+---
+
+## Development
+
+Run the hermetic test suite (no MATLAB or network required):
+
+```powershell
+py -m pytest -m "not matlab and not live"
+```
+
+`matlab` tests require a working MATLAB Engine install. `live` tests hit external APIs and run only with `--run-live`.

simbiology_mcp-0.1.0/pyproject.toml

@@ -0,0 +1,52 @@
+[build-system]
+requires = ["setuptools>=68"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "simbiology-mcp"
+version = "0.1.0"
+description = "Model Context Protocol server for MATLAB SimBiology: build, modify, simulate, and export systems-biology models from AI agents."
+readme = "README.md"
+requires-python = ">=3.12"
+authors = [{ name = "Yojith Sai Biradavolu", email = "yojith23@gmail.com" },
+           { name = "Sepanta Yalameha", email = "sepantayalameha2006@gmail.com" }]
+keywords = ["mcp", "simbiology", "matlab", "systems-biology", "pk-pd", "modeling"]
+
+# Direct runtime dependencies only. The fully pinned transitive closure lives in
+# uv.lock.
+dependencies = [
+    "fastmcp>=3.4,<4",
+    "httpx>=0.28",
+    "python-dotenv>=1.2",
+    "igem-registry-api>=0.1",
+    "tomlkit>=0.13",
+]
+
+[project.urls]
+Repository = "https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP"
+Issues = "https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/issues"
+Changelog = "https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/blob/main/CHANGELOG.md"
+Releases = "https://github.com/Sepanta-Yalameha/SIMBIOLOGY-MCP/releases"
+
+[project.optional-dependencies]
+dev = ["coverage>=7", "pytest>=8"]
+# The `matlab` extra pulls `matlabengine` from PyPI, whose version must match the
+# installed MATLAB release. simbiology_mcp/scripts/setup.py installs it straight
+# from the local MATLAB installation instead; prefer that unless the PyPI version matches.
+matlab = ["matlabengine"]
+
+[project.scripts]
+simbiology-mcp = "simbiology_mcp.interfaces.cli:main"
+
+[tool.setuptools.packages.find]
+include = ["simbiology_mcp*"]
+
+[tool.setuptools.package-data]
+"simbiology_mcp.skills" = ["SKILL.md"]
+
+[tool.coverage.run]
+source = ["simbiology_mcp"]
+
+[tool.black]
+line-length = 200
+target-version = ["py312"]

simbiology_mcp-0.1.0/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

simbiology_mcp-0.1.0/simbiology_mcp/__init__.py

@@ -0,0 +1 @@
+"""SimBiology MCP package."""

simbiology_mcp-0.1.0/simbiology_mcp/__main__.py

@@ -0,0 +1,9 @@
+"""Module entry point for `python -m simbiology_mcp`."""
+
+from __future__ import annotations
+
+from .interfaces.cli import main
+
+
+if __name__ == "__main__":
+    main()

simbiology_mcp-0.1.0/simbiology_mcp/core/__init__.py

@@ -0,0 +1 @@
+"""Core SimBiology session and model logic."""