simba-uw-tf-dev 4.5.3__tar.gz → 4.6.4__tar.gz

simba_uw_tf_dev-4.6.4/PKG-INFO

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+Metadata-Version: 2.1
+Name: simba_uw_tf_dev
+Version: 4.6.4
+Summary: Toolkit for computer classification and analysis of behaviors in experimental animals
+Home-page: https://github.com/sgoldenlab/simba
+Author: Simon Nilsson, Jia Jie Choong, Sophia Hwang
+Author-email: sronilsson@gmail.com
+License: Modified BSD 3-Clause License
+Platform: UNKNOWN
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Description-Content-Type: text/markdown
+Provides-Extra: arm
+Provides-Extra: gpu
+License-File: LICENSE
+
+# SimBA (Simple Behavioral Analysis)
+![SimBA Splash](https://raw.githubusercontent.com/sgoldenlab/simba/master/docs/tutorials_rst/img/index/landing_page_1.png)
+
+SimBA (Simple Behavioral Analysis) is a platform for analyzing behaviors of experimental animals within video recordings.
+
+### More Information
+See below for raison d'être, detailed API, tutorials, data, documentation, support, and walkthroughs:
+
+- GitHub: [https://github.com/sgoldenlab/simba](https://github.com/sgoldenlab/simba)
+- Documentation readthedocs: [https://simba-uw-tf-dev.readthedocs.io/en/latest/](https://simba-uw-tf-dev.readthedocs.io/en/latest/)
+- API: [https://simba-uw-tf-dev.readthedocs.io/en/latest/api.html](https://simba-uw-tf-dev.readthedocs.io/en/latest/api.html)
+- Gitter chat support: [https://app.gitter.im/#/room/#SimBA-Resource_community:gitter.im](https://app.gitter.im/#/room/#SimBA-Resource_community:gitter.im)
+- bioRxiv preprint: [https://www.biorxiv.org/content/10.1101/2020.04.19.049452v2](https://www.biorxiv.org/content/10.1101/2020.04.19.049452v2)
+- Nature Neuroscience paper: [https://www.nature.com/articles/s41593-024-01649-9](https://www.nature.com/articles/s41593-024-01649-9)
+- Open Science Framework (OSF) data buckets: [https://osf.io/tmu6y/](https://osf.io/tmu6y/)
+- Video examples: [http://youtube.com/playlist?list=PLi5Vwf0hhy1R6NDQJ3U28MOUJPfl2YWYl](http://youtube.com/playlist?list=PLi5Vwf0hhy1R6NDQJ3U28MOUJPfl2YWYl)
+- Slide examples: [https://simba-uw-tf-dev.readthedocs.io/en/latest/docs/workflow.html](https://simba-uw-tf-dev.readthedocs.io/en/latest/docs/workflow.html)
+
+### Installation
+To install SimBA, use the following command:
+
+```bash
+pip install simba-uw-tf-dev
+```
+
+### Citation
+If you use the code, please cite:
+
+```bash
+@article{Nilsson2020.04.19.049452,
+  author = {Nilsson, Simon RO and Goodwin, Nastacia L. and Choong, Jia Jie and Hwang, Sophia and Wright, Hayden R and Norville, Zane C and Tong, Xiaoyu and Lin, Dayu and Bentzley, Brandon S. and Eshel, Neir and McLaughlin, Ryan J and Golden, Sam A.},
+  title = {Simple Behavioral Analysis (SimBA) – an open source toolkit for computer classification of complex social behaviors in experimental animals},
+  elocation-id = {2020.04.19.049452},
+  year = {2020},
+  doi = {10.1101/2020.04.19.049452},
+  publisher = {Cold Spring Harbor Laboratory},
+  URL = {https://www.biorxiv.org/content/early/2020/04/21/2020.04.19.049452},
+  eprint = {https://www.biorxiv.org/content/early/2020/04/21/2020.04.19.049452.full.pdf},
+  journal = {bioRxiv}
+}
+```
+
+### Licence
+SimBA is licensed under GNU Lesser General Public License v3.0.
+
+### Contributors
+Contributers on Github https://github.com/sgoldenlab/simba#contributors
+
+### Contact
+* [Simon N](https://github.com/sronilsson), [sronilsson@gmail.com](mailto:sronilsson@gmail.com)
+
+
+
+

simba_uw_tf_dev-4.6.4/setup.py

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+"""
+SimBA (Simple Behavioral Analysis)
+https://github.com/sgoldenlab/simba
+Contributors.
+https://github.com/sgoldenlab/simba#contributors-
+Licensed under GNU Lesser General Public License v3.0
+"""
+
+import setuptools
+import platform
+from setuptools import setup, find_namespace_packages
+
+REQUIREMENTS_PATH = 'requirements.txt'
+ARM_REQUIREMENTS_PATH = 'requirements_arm.txt'
+GPU_REQUIREMENTS_PATH = 'requirements_gpu.txt'
+
+with open("docs/project_description.md", "r", encoding="utf-8") as fh:
+    long_description = fh.read()
+
+with open(REQUIREMENTS_PATH, "r") as f:
+    requirements = f.read().splitlines()
+
+with open(ARM_REQUIREMENTS_PATH, "r") as f:
+    arm_requirements = f.read().splitlines()
+
+with open(GPU_REQUIREMENTS_PATH, "r") as f:
+    gpu_requirements = f.read().splitlines()
+
+# Setup configuration
+setuptools.setup(
+    name="simba_uw_tf_dev",
+    version="4.6.4",
+    author="Simon Nilsson, Jia Jie Choong, Sophia Hwang",
+    author_email="sronilsson@gmail.com",
+    description="Toolkit for computer classification and analysis of behaviors in experimental animals",
+    long_description=long_description,
+    long_description_content_type="text/markdown",
+    url="https://github.com/sgoldenlab/simba",
+    install_requires=requirements,
+    extras_require={'arm': [arm_requirements], "gpu": [gpu_requirements]},
+    license='Modified BSD 3-Clause License',
+    license_files=('LICENSE',),
+    packages=setuptools.find_packages(exclude=["*.tests",
+                                               "*.tests.*",
+                                               "tests.*",
+                                               "tests",
+                                               "__pycache__",
+                                               "pose_configurations_archive",
+                                               "sandbox",
+                                               "sandbox.*",
+                                               ]),
+    # packages=find_namespace_packages(include=["simba*"],
+    #                                  exclude=["*.tests", "*.tests.*", "tests.*", "tests", "__pycache__", "__pycache__.*", "pose_configurations_archive", "pose_configurations_archive.*", "sandbox", "sandbox.*"]),
+    include_package_data=True,
+    classifiers=[
+        "Programming Language :: Python :: 3",
+        "Operating System :: OS Independent",
+    ],
+    entry_points={'console_scripts':['simba=simba.SimBA:main'],}
+)
+
+
+