siibra 1.0a11__tar.gz → 1.0a14__tar.gz

{siibra-1.0a11/siibra.egg-info → siibra-1.0a14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: siibra
-Version: 1.0a11
+Version: 1.0a14
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)

siibra-1.0a14/siibra/VERSION

@@ -0,0 +1 @@
+1.0a14

{siibra-1.0a11 → siibra-1.0a14}/siibra/commons.py

@@ -51,7 +51,7 @@ SIIBRA_LOG_LEVEL = os.getenv("SIIBRA_LOG_LEVEL", "INFO")
 SIIBRA_USE_CONFIGURATION = os.getenv("SIIBRA_USE_CONFIGURATION")
 SIIBRA_USE_LOCAL_SNAPSPOT = os.getenv("SIIBRA_USE_LOCAL_SNAPSPOT")
 SKIP_CACHEINIT_MAINTENANCE = os.getenv("SKIP_CACHEINIT_MAINTENANCE")
-SIIBRA_MAX_FETCH_SIZE_GIB = os.getenv("SIIBRA_MAX_FETCH_SIZE_GIB", 0.2)
+SIIBRA_MAX_FETCH_SIZE_GIB = float(os.getenv("SIIBRA_MAX_FETCH_SIZE_GIB", 0.2))
 
 with open(os.path.join(ROOT_DIR, "VERSION"), "r") as fp:
     __version__ = fp.read().strip()

{siibra-1.0a11 → siibra-1.0a14}/siibra/features/feature.py

@@ -393,6 +393,7 @@ class Feature:
 
     @staticmethod
     def _encode_concept(concept: concept.AtlasConcept):
+        from ..locations import Location
         encoded_c = []
         if isinstance(concept, space.Space):
             encoded_c.append(f"s:{concept.id}")
@@ -403,6 +404,8 @@ class Feature:
             encoded_c.append(f"r:{concept.name}")
         elif isinstance(concept, volume.Volume):
             encoded_c.append(f"v:{concept.name}")
+        elif isinstance(concept, Location):
+            encoded_c.append(f"loc:{Location}")
 
         if len(encoded_c) == 0:
             raise EncodeLiveQueryIdException("no concept is encoded")

{siibra-1.0a11 → siibra-1.0a14}/siibra/features/tabular/gene_expression.py

@@ -239,7 +239,7 @@ class GeneExpressions(
         """
         wrapwidth = kwargs.pop("textwrap") if "textwrap" in kwargs else 40
         kwargs["title"] = kwargs.pop("title", None) \
-            or "\n".join(wrap(f"{self.modality} measured in {self.anchor._regionspec}", wrapwidth))
+            or "\n".join(wrap(f"{self.modality} measured in {self.anchor._regionspec or self.anchor.location}", wrapwidth))
         kwargs["kind"] = "box"
         if backend == "matplotlib":
             for arg in ['yerr', 'y', 'ylabel', 'xlabel', 'width']:

{siibra-1.0a11 → siibra-1.0a14}/siibra/volumes/sparsemap.py

@@ -20,6 +20,7 @@ from ..commons import MapIndex, logger, connected_components, siibra_tqdm
 from ..locations import boundingbox
 from ..retrieval import cache
 from ..retrieval.repositories import ZipfileConnector, GitlabConnector
+from ..exceptions import InsufficientArgumentException, ExcessiveArgumentException
 
 from os import path, rename, makedirs
 from zipfile import ZipFile, ZIP_DEFLATED
@@ -390,7 +391,7 @@ class SparseMap(parcellationmap.Map):
             assert length == 1
         except AssertionError:
             if length > 1:
-                raise parcellationmap.ExcessiveArgumentException(
+                raise ExcessiveArgumentException(
                     "One and only one of region_or_index, region, index can be defined for fetch"
                 )
             # user can provide no arguments, which assumes one and only one volume present
@@ -416,7 +417,7 @@ class SparseMap(parcellationmap.Map):
                 assert len(self) == 1
                 volidx = 0
             except AssertionError:
-                raise parcellationmap.InsufficientArgumentException(
+                raise InsufficientArgumentException(
                     f"{self.__class__.__name__} provides {len(self)} volumes. "
                     "Specify 'region' or 'index' for fetch() to identify one."
                 )

{siibra-1.0a11 → siibra-1.0a14/siibra.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: siibra
-Version: 1.0a11
+Version: 1.0a14
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)

siibra-1.0a11/siibra/VERSION

@@ -1 +0,0 @@
-1.0a11