siibra 1.0.1a8__tar.gz → 1.0.1a9__tar.gz

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  1. {siibra-1.0.1a8/siibra.egg-info → siibra-1.0.1a9}/PKG-INFO +1 -1
  2. siibra-1.0.1a9/siibra/VERSION +1 -0
  3. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/commons.py +1 -1
  4. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/explorer/url.py +2 -1
  5. {siibra-1.0.1a8 → siibra-1.0.1a9/siibra.egg-info}/PKG-INFO +1 -1
  6. siibra-1.0.1a8/siibra/VERSION +0 -1
  7. {siibra-1.0.1a8 → siibra-1.0.1a9}/LICENSE +0 -0
  8. {siibra-1.0.1a8 → siibra-1.0.1a9}/MANIFEST.in +0 -0
  9. {siibra-1.0.1a8 → siibra-1.0.1a9}/README.rst +0 -0
  10. {siibra-1.0.1a8 → siibra-1.0.1a9}/setup.cfg +0 -0
  11. {siibra-1.0.1a8 → siibra-1.0.1a9}/setup.py +0 -0
  12. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/__init__.py +0 -0
  13. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/configuration/__init__.py +0 -0
  14. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/configuration/configuration.py +0 -0
  15. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/configuration/factory.py +0 -0
  16. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/__init__.py +0 -0
  17. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/assignment.py +0 -0
  18. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/atlas.py +0 -0
  19. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/concept.py +0 -0
  20. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/parcellation.py +0 -0
  21. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/region.py +0 -0
  22. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/space.py +0 -0
  23. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/structure.py +0 -0
  24. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/exceptions.py +0 -0
  25. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/explorer/__init__.py +0 -0
  26. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/explorer/util.py +0 -0
  27. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/__init__.py +0 -0
  28. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/anchor.py +0 -0
  29. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/__init__.py +0 -0
  30. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/functional_connectivity.py +0 -0
  31. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/regional_connectivity.py +0 -0
  32. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/streamline_counts.py +0 -0
  33. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/streamline_lengths.py +0 -0
  34. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/connectivity/tracing_connectivity.py +0 -0
  35. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/dataset/__init__.py +0 -0
  36. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/dataset/ebrains.py +0 -0
  37. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/feature.py +0 -0
  38. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/image/__init__.py +0 -0
  39. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/image/image.py +0 -0
  40. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/image/sections.py +0 -0
  41. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/image/volume_of_interest.py +0 -0
  42. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/__init__.py +0 -0
  43. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/bigbrain_intensity_profile.py +0 -0
  44. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/cell_density_profile.py +0 -0
  45. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/cortical_profile.py +0 -0
  46. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/gene_expression.py +0 -0
  47. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/layerwise_bigbrain_intensities.py +0 -0
  48. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/layerwise_cell_density.py +0 -0
  49. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/receptor_density_fingerprint.py +0 -0
  50. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/receptor_density_profile.py +0 -0
  51. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/regional_timeseries_activity.py +0 -0
  52. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/features/tabular/tabular.py +0 -0
  53. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/livequeries/__init__.py +0 -0
  54. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/livequeries/allen.py +0 -0
  55. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/livequeries/bigbrain.py +0 -0
  56. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/livequeries/ebrains.py +0 -0
  57. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/livequeries/query.py +0 -0
  58. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/__init__.py +0 -0
  59. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/boundingbox.py +0 -0
  60. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/experimental.py +0 -0
  61. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/location.py +0 -0
  62. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/point.py +0 -0
  63. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/locations/pointcloud.py +0 -0
  64. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/__init__.py +0 -0
  65. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/cache.py +0 -0
  66. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/datasets.py +0 -0
  67. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/exceptions/__init__.py +0 -0
  68. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/repositories.py +0 -0
  69. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/retrieval/requests.py +0 -0
  70. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/vocabularies/__init__.py +0 -0
  71. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/vocabularies/gene_names.json +0 -0
  72. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/vocabularies/receptor_symbols.json +0 -0
  73. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/vocabularies/region_aliases.json +0 -0
  74. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/__init__.py +0 -0
  75. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/parcellationmap.py +0 -0
  76. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/__init__.py +0 -0
  77. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/freesurfer.py +0 -0
  78. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/gifti.py +0 -0
  79. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/neuroglancer.py +0 -0
  80. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/nifti.py +0 -0
  81. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/providers/provider.py +0 -0
  82. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/sparsemap.py +0 -0
  83. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/volumes/volume.py +0 -0
  84. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra.egg-info/SOURCES.txt +0 -0
  85. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra.egg-info/dependency_links.txt +0 -0
  86. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra.egg-info/requires.txt +0 -0
  87. {siibra-1.0.1a8 → siibra-1.0.1a9}/siibra.egg-info/top_level.txt +0 -0
  88. {siibra-1.0.1a8 → siibra-1.0.1a9}/test/test_siibra.py +0 -0
{siibra-1.0.1a8/siibra.egg-info → siibra-1.0.1a9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: siibra
3
- Version: 1.0.1a8
3
+ Version: 1.0.1a9
4
4
  Summary: siibra - Software interfaces for interacting with brain atlases
5
5
  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
6
6
  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
siibra-1.0.1a9/siibra/VERSION ADDED
@@ -0,0 +1 @@
1
+ 1.0.1-alpha.9
{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/commons.py RENAMED
@@ -753,7 +753,7 @@ class Species(Enum):
753
753
  OPENMINDS_IDS = {
754
754
  "97c070c6-8e1f-4ee8-9d28-18c7945921dd": 1,
755
755
  "ab532423-1fd7-4255-8c6f-f99dc6df814f": 2,
756
- "d9875ebd-260e-4337-a637-b62fed4aa91d:": 3,
756
+ "d9875ebd-260e-4337-a637-b62fed4aa91d": 3,
757
757
  "0b6df2b3-5297-40cf-adde-9443d3d8214a": 4,
758
758
  "3ad33ec1-5152-497d-9352-1cf4497e0edd": 5,
759
759
  "2ab3ecf5-76cc-46fa-98ab-309e3fd50f57": 6,
{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/explorer/url.py RENAMED
@@ -162,6 +162,7 @@ class DecodedUrl:
162
162
 
163
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  def decode_url(url: str, vp_length=1000):
164
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  import siibra
165
+ from siibra.locations import Point, BoundingBox
165
166
 
166
167
  try:
167
168
  space_match = re.search(r"/t:(?P<space_id>[^/]+)", url)
@@ -171,7 +172,7 @@ def decode_url(url: str, vp_length=1000):
171
172
  except Exception as e:
172
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  raise DecodeNavigationException from e
173
174
 
174
- nav_match = re.search(r"/@:(?P<navigation_str>.+)/?", url)
175
+ nav_match = re.search(r"/@:(?P<navigation_str>[^/]+)/?", url)
175
176
  navigation_str = nav_match.group("navigation_str")
176
177
  for char in navigation_str:
177
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  assert char in cipher or char in [
{siibra-1.0.1a8 → siibra-1.0.1a9/siibra.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: siibra
3
- Version: 1.0.1a8
3
+ Version: 1.0.1a9
4
4
  Summary: siibra - Software interfaces for interacting with brain atlases
5
5
  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
6
6
  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
siibra-1.0.1a8/siibra/VERSION DELETED
@@ -1 +0,0 @@
1
- 1.0.1-alpha.8
{siibra-1.0.1a8 → siibra-1.0.1a9}/LICENSE RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/MANIFEST.in RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/README.rst RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/setup.cfg RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/setup.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/__init__.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/atlas.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/region.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/core/space.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/siibra/exceptions.py RENAMED
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{siibra-1.0.1a8 → siibra-1.0.1a9}/test/test_siibra.py RENAMED
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