siibra 1.0.1a8__tar.gz → 1.0.1a10__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of siibra might be problematic. Click here for more details.

Files changed (88) hide show
  1. {siibra-1.0.1a8/siibra.egg-info → siibra-1.0.1a10}/PKG-INFO +1 -1
  2. siibra-1.0.1a10/siibra/VERSION +1 -0
  3. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/commons.py +1 -1
  4. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/explorer/url.py +2 -1
  5. {siibra-1.0.1a8 → siibra-1.0.1a10/siibra.egg-info}/PKG-INFO +1 -1
  6. siibra-1.0.1a8/siibra/VERSION +0 -1
  7. {siibra-1.0.1a8 → siibra-1.0.1a10}/LICENSE +0 -0
  8. {siibra-1.0.1a8 → siibra-1.0.1a10}/MANIFEST.in +0 -0
  9. {siibra-1.0.1a8 → siibra-1.0.1a10}/README.rst +0 -0
  10. {siibra-1.0.1a8 → siibra-1.0.1a10}/setup.cfg +0 -0
  11. {siibra-1.0.1a8 → siibra-1.0.1a10}/setup.py +0 -0
  12. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/__init__.py +0 -0
  13. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/configuration/__init__.py +0 -0
  14. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/configuration/configuration.py +0 -0
  15. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/configuration/factory.py +0 -0
  16. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/__init__.py +0 -0
  17. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/assignment.py +0 -0
  18. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/atlas.py +0 -0
  19. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/concept.py +0 -0
  20. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/parcellation.py +0 -0
  21. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/region.py +0 -0
  22. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/space.py +0 -0
  23. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/structure.py +0 -0
  24. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/exceptions.py +0 -0
  25. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/explorer/__init__.py +0 -0
  26. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/explorer/util.py +0 -0
  27. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/__init__.py +0 -0
  28. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/anchor.py +0 -0
  29. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/__init__.py +0 -0
  30. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/functional_connectivity.py +0 -0
  31. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/regional_connectivity.py +0 -0
  32. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/streamline_counts.py +0 -0
  33. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/streamline_lengths.py +0 -0
  34. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/connectivity/tracing_connectivity.py +0 -0
  35. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/dataset/__init__.py +0 -0
  36. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/dataset/ebrains.py +0 -0
  37. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/feature.py +0 -0
  38. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/image/__init__.py +0 -0
  39. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/image/image.py +0 -0
  40. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/image/sections.py +0 -0
  41. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/image/volume_of_interest.py +0 -0
  42. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/__init__.py +0 -0
  43. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/bigbrain_intensity_profile.py +0 -0
  44. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/cell_density_profile.py +0 -0
  45. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/cortical_profile.py +0 -0
  46. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/gene_expression.py +0 -0
  47. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/layerwise_bigbrain_intensities.py +0 -0
  48. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/layerwise_cell_density.py +0 -0
  49. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/receptor_density_fingerprint.py +0 -0
  50. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/receptor_density_profile.py +0 -0
  51. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/regional_timeseries_activity.py +0 -0
  52. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/features/tabular/tabular.py +0 -0
  53. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/livequeries/__init__.py +0 -0
  54. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/livequeries/allen.py +0 -0
  55. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/livequeries/bigbrain.py +0 -0
  56. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/livequeries/ebrains.py +0 -0
  57. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/livequeries/query.py +0 -0
  58. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/__init__.py +0 -0
  59. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/boundingbox.py +0 -0
  60. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/experimental.py +0 -0
  61. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/location.py +0 -0
  62. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/point.py +0 -0
  63. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/locations/pointcloud.py +0 -0
  64. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/__init__.py +0 -0
  65. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/cache.py +0 -0
  66. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/datasets.py +0 -0
  67. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/exceptions/__init__.py +0 -0
  68. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/repositories.py +0 -0
  69. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/retrieval/requests.py +0 -0
  70. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/vocabularies/__init__.py +0 -0
  71. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/vocabularies/gene_names.json +0 -0
  72. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/vocabularies/receptor_symbols.json +0 -0
  73. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/vocabularies/region_aliases.json +0 -0
  74. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/__init__.py +0 -0
  75. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/parcellationmap.py +0 -0
  76. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/__init__.py +0 -0
  77. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/freesurfer.py +0 -0
  78. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/gifti.py +0 -0
  79. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/neuroglancer.py +0 -0
  80. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/nifti.py +0 -0
  81. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/providers/provider.py +0 -0
  82. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/sparsemap.py +0 -0
  83. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/volumes/volume.py +0 -0
  84. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra.egg-info/SOURCES.txt +0 -0
  85. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra.egg-info/dependency_links.txt +0 -0
  86. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra.egg-info/requires.txt +0 -0
  87. {siibra-1.0.1a8 → siibra-1.0.1a10}/siibra.egg-info/top_level.txt +0 -0
  88. {siibra-1.0.1a8 → siibra-1.0.1a10}/test/test_siibra.py +0 -0
{siibra-1.0.1a8/siibra.egg-info → siibra-1.0.1a10}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: siibra
3
- Version: 1.0.1a8
3
+ Version: 1.0.1a10
4
4
  Summary: siibra - Software interfaces for interacting with brain atlases
5
5
  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
6
6
  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
siibra-1.0.1a10/siibra/VERSION ADDED
@@ -0,0 +1 @@
1
+ 1.0.1-alpha.10
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/commons.py RENAMED
@@ -753,7 +753,7 @@ class Species(Enum):
753
753
  OPENMINDS_IDS = {
754
754
  "97c070c6-8e1f-4ee8-9d28-18c7945921dd": 1,
755
755
  "ab532423-1fd7-4255-8c6f-f99dc6df814f": 2,
756
- "d9875ebd-260e-4337-a637-b62fed4aa91d:": 3,
756
+ "d9875ebd-260e-4337-a637-b62fed4aa91d": 3,
757
757
  "0b6df2b3-5297-40cf-adde-9443d3d8214a": 4,
758
758
  "3ad33ec1-5152-497d-9352-1cf4497e0edd": 5,
759
759
  "2ab3ecf5-76cc-46fa-98ab-309e3fd50f57": 6,
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/explorer/url.py RENAMED
@@ -162,6 +162,7 @@ class DecodedUrl:
162
162
 
163
163
  def decode_url(url: str, vp_length=1000):
164
164
  import siibra
165
+ from siibra.locations import Point, BoundingBox
165
166
 
166
167
  try:
167
168
  space_match = re.search(r"/t:(?P<space_id>[^/]+)", url)
@@ -171,7 +172,7 @@ def decode_url(url: str, vp_length=1000):
171
172
  except Exception as e:
172
173
  raise DecodeNavigationException from e
173
174
 
174
- nav_match = re.search(r"/@:(?P<navigation_str>.+)/?", url)
175
+ nav_match = re.search(r"/@:(?P<navigation_str>[^/]+)/?", url)
175
176
  navigation_str = nav_match.group("navigation_str")
176
177
  for char in navigation_str:
177
178
  assert char in cipher or char in [
{siibra-1.0.1a8 → siibra-1.0.1a10/siibra.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: siibra
3
- Version: 1.0.1a8
3
+ Version: 1.0.1a10
4
4
  Summary: siibra - Software interfaces for interacting with brain atlases
5
5
  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
6
6
  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
siibra-1.0.1a8/siibra/VERSION DELETED
@@ -1 +0,0 @@
1
- 1.0.1-alpha.8
{siibra-1.0.1a8 → siibra-1.0.1a10}/LICENSE RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/MANIFEST.in RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/README.rst RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/setup.cfg RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/setup.py RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/__init__.py RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/atlas.py RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/core/space.py RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/siibra/exceptions.py RENAMED
File without changes
{siibra-1.0.1a8 → siibra-1.0.1a10}/test/test_siibra.py RENAMED
File without changes