siibra 1.0.1a5__tar.gz → 1.0.1a7__tar.gz

{siibra-1.0.1a5/siibra.egg-info → siibra-1.0.1a7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: siibra
-Version: 1.0.1a5
+Version: 1.0.1a7
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)

siibra-1.0.1a7/siibra/VERSION

@@ -0,0 +1 @@
+1.0.1-alpha.7

{siibra-1.0.1a5 → siibra-1.0.1a7}/siibra/features/tabular/layerwise_cell_density.py

@@ -84,17 +84,20 @@ class LayerwiseCellDensity(
             )
             fields = cellfile.split("/")
             for layer in layer_volumes.index:
-                data.append({
-                    'layer': layer,
-                    'layername': layers["Name"].loc[layer],
-                    'counts': counts.loc[layer],
-                    'area_mu2': layers["Area(micron**2)"].loc[layer],
-                    'volume': layer_volumes.loc[layer],
-                    'density': counts.loc[layer] / layer_volumes.loc[layer],
-                    'regionspec': fields[-5],
-                    'section': int(fields[-3]),
-                    'patch': int(fields[-2]),
-                })
+                try:
+                    data.append({
+                        'layer': layer,
+                        'layername': layers["Name"].loc[layer],
+                        'counts': counts.loc[layer],
+                        'area_mu2': layers["Area(micron**2)"].loc[layer],
+                        'volume': layer_volumes.loc[layer],
+                        'density': counts.loc[layer] / layer_volumes.loc[layer],
+                        'regionspec': fields[-5],
+                        'section': int(fields[-3]),
+                        'patch': int(fields[-2]),
+                    })
+                except KeyError:
+                    continue
         return pd.DataFrame(data)
 
     @property

{siibra-1.0.1a5 → siibra-1.0.1a7}/siibra/locations/location.py

@@ -31,7 +31,8 @@ class Location(BrainStructure):
     """
 
     # backend for transforming coordinates between spaces
-    SPACEWARP_SERVER = "https://hbp-spatial-backend.apps.hbp.eu/v1"
+    # for detail, see https://github.com/HumanBrainProject/hbp-spatial-backend
+    SPACEWARP_SERVER = "https://siibra-spatial-backend.apps.ebrains.eu/v1"
 
     # lookup of space identifiers to be used by SPACEWARP_SERVER
     SPACEWARP_IDS = {

{siibra-1.0.1a5 → siibra-1.0.1a7/siibra.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: siibra
-Version: 1.0.1a5
+Version: 1.0.1a7
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)

siibra-1.0.1a5/siibra/VERSION

@@ -1 +0,0 @@
-1.0.1-alpha.5