siibra 0.4a87__tar.gz → 0.4a89__tar.gz

{siibra-0.4a87/siibra.egg-info → siibra-0.4a89}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: siibra
-Version: 0.4a87
+Version: 0.4a89
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
@@ -31,6 +31,7 @@ Dynamic: classifier
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page
+Dynamic: license-file
 Dynamic: requires-dist
 Dynamic: requires-python
 Dynamic: summary

siibra-0.4a89/siibra/VERSION

@@ -0,0 +1 @@
+0.4a89

{siibra-0.4a87 → siibra-0.4a89}/siibra/commons.py

@@ -698,6 +698,7 @@ class Species(Enum):
     MACACA_MULATTA = 5
     MACACA_FUSCATA = 6
     CHLOROCEBUS_AETHIOPS_SABAEUS = 7
+    CALLITHRIX_JACCHUS = 8
 
     UNSPECIFIED_SPECIES = 999
 

{siibra-0.4a87 → siibra-0.4a89}/siibra/configuration/factory.py

@@ -460,6 +460,10 @@ class Factory:
             return volume_of_interest.LSFMVolumeOfInterest(
                 modality="Light Sheet Fluorescence Microscopy", **kwargs
             )
+        elif modality == "morphometry":
+            return volume_of_interest.MorphometryVolumeOfInterest(
+                modality="Morphometry", **kwargs
+            )
         else:
             raise ValueError(f"No method for building image section feature type {modality}.")
 

{siibra-0.4a87 → siibra-0.4a89}/siibra/features/feature.py

@@ -219,7 +219,10 @@ class Feature:
         from ..configuration.configuration import Configuration
         conf = Configuration()
         Configuration.register_cleanup(cls.clean_instances)
-        assert cls._configuration_folder in conf.folders
+        if cls._configuration_folder not in conf.folders:
+            logger.debug(f"{cls._configuration_folder} is not in current configuration")
+            return []
+
         cls._preconfigured_instances = [
             o for o in conf.build_objects(cls._configuration_folder)
             if isinstance(o, cls)

{siibra-0.4a87 → siibra-0.4a89}/siibra/features/image/__init__.py

@@ -21,7 +21,8 @@ from .volume_of_interest import (
     MRIVolumeOfInterest,
     XPCTVolumeOfInterest,
     LSFMVolumeOfInterest,
-    DTIVolumeOfInterest
+    DTIVolumeOfInterest,
+    MorphometryVolumeOfInterest
     # SegmentedVolumeOfInterest
 )
 from .sections import CellbodyStainedSection

{siibra-0.4a87 → siibra-0.4a89}/siibra/features/image/volume_of_interest.py

@@ -79,6 +79,14 @@ class LSFMVolumeOfInterest(
     def __init__(self, modality, **kwargs):
         image.Image.__init__(self, **kwargs, modality=modality)
 
+class MorphometryVolumeOfInterest(
+    image.Image,
+    configuration_folder="features/images/vois/morphometry",
+    category="macrostructural"
+):
+    def __init__(self, modality, **kwargs):
+        image.Image.__init__(self, **kwargs, modality=modality)
+
 # class SegmentedVolumeOfInterest(
 #     image.Image,
 #     configuration_folder="features/images/vois/segmentation",

{siibra-0.4a87 → siibra-0.4a89/siibra.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: siibra
-Version: 0.4a87
+Version: 0.4a89
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
@@ -31,6 +31,7 @@ Dynamic: classifier
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page
+Dynamic: license-file
 Dynamic: requires-dist
 Dynamic: requires-python
 Dynamic: summary

siibra-0.4a87/siibra/VERSION

@@ -1 +0,0 @@
-0.4a87