siibra 0.4a86__tar.gz → 0.4a87__tar.gz

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Files changed (82) hide show
  1. {siibra-0.4a86/siibra.egg-info → siibra-0.4a87}/PKG-INFO +11 -2
  2. siibra-0.4a87/siibra/VERSION +1 -0
  3. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/anchor.py +15 -18
  4. {siibra-0.4a86 → siibra-0.4a87/siibra.egg-info}/PKG-INFO +11 -2
  5. siibra-0.4a86/siibra/VERSION +0 -1
  6. {siibra-0.4a86 → siibra-0.4a87}/LICENSE +0 -0
  7. {siibra-0.4a86 → siibra-0.4a87}/MANIFEST.in +0 -0
  8. {siibra-0.4a86 → siibra-0.4a87}/README.rst +0 -0
  9. {siibra-0.4a86 → siibra-0.4a87}/setup.cfg +0 -0
  10. {siibra-0.4a86 → siibra-0.4a87}/setup.py +0 -0
  11. {siibra-0.4a86 → siibra-0.4a87}/siibra/__init__.py +0 -0
  12. {siibra-0.4a86 → siibra-0.4a87}/siibra/commons.py +0 -0
  13. {siibra-0.4a86 → siibra-0.4a87}/siibra/configuration/__init__.py +0 -0
  14. {siibra-0.4a86 → siibra-0.4a87}/siibra/configuration/configuration.py +0 -0
  15. {siibra-0.4a86 → siibra-0.4a87}/siibra/configuration/factory.py +0 -0
  16. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/__init__.py +0 -0
  17. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/atlas.py +0 -0
  18. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/concept.py +0 -0
  19. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/parcellation.py +0 -0
  20. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/region.py +0 -0
  21. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/relation_qualification.py +0 -0
  22. {siibra-0.4a86 → siibra-0.4a87}/siibra/core/space.py +0 -0
  23. {siibra-0.4a86 → siibra-0.4a87}/siibra/explorer/__init__.py +0 -0
  24. {siibra-0.4a86 → siibra-0.4a87}/siibra/explorer/url.py +0 -0
  25. {siibra-0.4a86 → siibra-0.4a87}/siibra/explorer/util.py +0 -0
  26. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/__init__.py +0 -0
  27. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/__init__.py +0 -0
  28. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/functional_connectivity.py +0 -0
  29. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/regional_connectivity.py +0 -0
  30. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/streamline_counts.py +0 -0
  31. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/streamline_lengths.py +0 -0
  32. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/connectivity/tracing_connectivity.py +0 -0
  33. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/dataset/__init__.py +0 -0
  34. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/dataset/ebrains.py +0 -0
  35. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/feature.py +0 -0
  36. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/image/__init__.py +0 -0
  37. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/image/image.py +0 -0
  38. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/image/sections.py +0 -0
  39. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/image/volume_of_interest.py +0 -0
  40. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/__init__.py +0 -0
  41. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/bigbrain_intensity_profile.py +0 -0
  42. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/cell_density_profile.py +0 -0
  43. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/cortical_profile.py +0 -0
  44. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/gene_expression.py +0 -0
  45. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/layerwise_bigbrain_intensities.py +0 -0
  46. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/layerwise_cell_density.py +0 -0
  47. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/receptor_density_fingerprint.py +0 -0
  48. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/receptor_density_profile.py +0 -0
  49. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/regional_timeseries_activity.py +0 -0
  50. {siibra-0.4a86 → siibra-0.4a87}/siibra/features/tabular/tabular.py +0 -0
  51. {siibra-0.4a86 → siibra-0.4a87}/siibra/livequeries/__init__.py +0 -0
  52. {siibra-0.4a86 → siibra-0.4a87}/siibra/livequeries/allen.py +0 -0
  53. {siibra-0.4a86 → siibra-0.4a87}/siibra/livequeries/bigbrain.py +0 -0
  54. {siibra-0.4a86 → siibra-0.4a87}/siibra/livequeries/ebrains.py +0 -0
  55. {siibra-0.4a86 → siibra-0.4a87}/siibra/livequeries/query.py +0 -0
  56. {siibra-0.4a86 → siibra-0.4a87}/siibra/locations/__init__.py +0 -0
  57. {siibra-0.4a86 → siibra-0.4a87}/siibra/locations/boundingbox.py +0 -0
  58. {siibra-0.4a86 → siibra-0.4a87}/siibra/locations/location.py +0 -0
  59. {siibra-0.4a86 → siibra-0.4a87}/siibra/locations/point.py +0 -0
  60. {siibra-0.4a86 → siibra-0.4a87}/siibra/locations/pointset.py +0 -0
  61. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/__init__.py +0 -0
  62. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/cache.py +0 -0
  63. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/datasets.py +0 -0
  64. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/exceptions/__init__.py +0 -0
  65. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/repositories.py +0 -0
  66. {siibra-0.4a86 → siibra-0.4a87}/siibra/retrieval/requests.py +0 -0
  67. {siibra-0.4a86 → siibra-0.4a87}/siibra/vocabularies/__init__.py +0 -0
  68. {siibra-0.4a86 → siibra-0.4a87}/siibra/vocabularies/gene_names.json +0 -0
  69. {siibra-0.4a86 → siibra-0.4a87}/siibra/vocabularies/receptor_symbols.json +0 -0
  70. {siibra-0.4a86 → siibra-0.4a87}/siibra/vocabularies/region_aliases.json +0 -0
  71. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/__init__.py +0 -0
  72. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/gifti.py +0 -0
  73. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/neuroglancer.py +0 -0
  74. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/nifti.py +0 -0
  75. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/parcellationmap.py +0 -0
  76. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/sparsemap.py +0 -0
  77. {siibra-0.4a86 → siibra-0.4a87}/siibra/volumes/volume.py +0 -0
  78. {siibra-0.4a86 → siibra-0.4a87}/siibra.egg-info/SOURCES.txt +0 -0
  79. {siibra-0.4a86 → siibra-0.4a87}/siibra.egg-info/dependency_links.txt +0 -0
  80. {siibra-0.4a86 → siibra-0.4a87}/siibra.egg-info/requires.txt +0 -0
  81. {siibra-0.4a86 → siibra-0.4a87}/siibra.egg-info/top_level.txt +0 -0
  82. {siibra-0.4a86 → siibra-0.4a87}/test/test_siibra.py +0 -0
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.2
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  Name: siibra
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- Version: 0.4a86
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+ Version: 0.4a87
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  Summary: siibra - Software interfaces for interacting with brain atlases
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  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
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  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
@@ -25,6 +25,15 @@ Requires-Dist: nilearn
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  Requires-Dist: typing-extensions; python_version < "3.8"
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  Requires-Dist: filelock
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  Requires-Dist: ebrains-drive>=0.6.0
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+ Dynamic: author
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+ Dynamic: author-email
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+ Dynamic: classifier
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+ Dynamic: description
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+ Dynamic: description-content-type
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+ Dynamic: home-page
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+ Dynamic: requires-dist
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+ Dynamic: requires-python
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+ Dynamic: summary
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  |License| |PyPI version| |doi| |Python versions| |Documentation Status|
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@@ -0,0 +1 @@
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+ 0.4a87
@@ -146,24 +146,21 @@ class AnatomicalAnchor:
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  """
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  if concept not in self._assignments:
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  matches: List[AnatomicalAssignment] = []
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- if isinstance(concept, Space):
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- if self.space == concept:
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- matches.append(
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- AnatomicalAssignment(self.space, concept, AssignmentQualification.EXACT)
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- )
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- elif isinstance(concept, Region):
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- if concept.species in self.species:
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- if any(_.matches(self._regionspec) for _ in concept) \
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- or self.has_region_aliases: # dramatic speedup, since decoding _regionspec is expensive
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- for r in self.regions:
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- matches.append(AnatomicalAnchor.match_regions(r, concept))
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- if len(concept.root.find(self._regionspec)) == 0:
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- # We perform the (quite expensive) location-to-region test
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- # only if this anchor's regionspec is not known to the
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- # parcellation of the query region. Otherwise we can rely
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- # on the region-to-region test.
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- if self.location is not None:
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- matches.append(AnatomicalAnchor.match_location_to_region(self.location, concept))
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+ if isinstance(concept, Space) and self.space == concept:
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+ matches.append(
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+ AnatomicalAssignment(self.space, concept, AssignmentQualification.EXACT)
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+ )
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+ elif isinstance(concept, Region) and concept.species in self.species:
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+ hierarchy_search = concept.root.find(self._regionspec)
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+ if len(hierarchy_search) > 0 or self.has_region_aliases: # dramatic speedup, since decoding _regionspec is expensive
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+ for r in self.regions:
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+ matches.append(AnatomicalAnchor.match_regions(r, concept))
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+ if len(hierarchy_search) == 0 and self.location is not None:
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+ # We perform the (quite expensive) location-to-region test
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+ # only if this anchor's regionspec is not known to the
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+ # parcellation of the query region. Otherwise we can rely
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+ # on the region-to-region test.
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+ matches.append(AnatomicalAnchor.match_location_to_region(self.location, concept))
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  elif isinstance(concept, Location):
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  if self.location is not None:
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  matches.append(AnatomicalAnchor.match_locations(self.location, concept))
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.2
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  Name: siibra
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- Version: 0.4a86
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+ Version: 0.4a87
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  Summary: siibra - Software interfaces for interacting with brain atlases
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  Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
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  Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)
@@ -25,6 +25,15 @@ Requires-Dist: nilearn
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  Requires-Dist: typing-extensions; python_version < "3.8"
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  Requires-Dist: filelock
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  Requires-Dist: ebrains-drive>=0.6.0
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+ Dynamic: author
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+ Dynamic: author-email
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+ Dynamic: classifier
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+ Dynamic: description
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+ Dynamic: description-content-type
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+ Dynamic: home-page
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+ Dynamic: requires-dist
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+ Dynamic: requires-python
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+ Dynamic: summary
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  |License| |PyPI version| |doi| |Python versions| |Documentation Status|
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- 0.4a86
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