PyPI - sierra-research - Versions diffs - 1.3.1__tar.gz → 1.3.6__tar.gz - Mend

sierra-research 1.3.1tar.gz → 1.3.6tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (247) hide show

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/actions/publish/action.yml RENAMED Viewed

@@ -17,11 +17,12 @@ runs:
       shell: bash
       run: |
         python3 -m build
+        cd docs && make linkcheck
     - name: Set tag
       if: github.ref == 'refs/heads/devel'
       shell: bash
-      run: echo "RELEASE_TAG=v$(python3 setup.py --version).beta" >> $GITHUB_ENV
+      run: echo "RELEASE_TAG=$(python3 setup.py --version).beta" >> $GITHUB_ENV
     - name: Github beta release
       if: github.ref == 'refs/heads/devel'
@@ -45,7 +46,7 @@ runs:
     - name: Set tag
       if: github.ref == 'refs/heads/master'
       shell: bash
-      run: echo "RELEASE_TAG=v$(python3 setup.py --version)" >> $GITHUB_ENV
+      run: echo "RELEASE_TAG=$(python3 setup.py --version)" >> $GITHUB_ENV
     - name: Github release
       if: github.ref == 'refs/heads/master'

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/actions/sierra-setup/action.yml RENAMED Viewed

@@ -21,26 +21,6 @@ runs:
       with:
         python-version: ${{ matrix.python-version }}
-    # - uses: Setup python (ubuntu)
-    #   if: runner.os == 'Linux'
-    #   shell: bash
-    #   run: |
-    #     # apt fails randomly on microsoft's azure servers...
-    #     sudo sed -i 's/azure\.//' /etc/apt/sources.list
-    #     sudo add-apt-repository -y ppa:deadsnakes/ppa
-    #     sudo apt-get update
-    #     sudo apt-get install python${{ matrix.python-version }} python${{ matrix.python-version }}-dev
-    #     sudo apt-get install python${{ matrix.python-version }}-venv python3-apt
-    #     sudo apt-get install python3-pip python3-cairo intltool python3-wheel strace
-    #     sudo update-alternatives --install /usr/bin/python3 python3 /usr/bin/python${{ matrix.python-version }} 1
-    #     # HACK HACK HACK!
-    #     sudo ln -s /usr/lib/python3/dist-packages/apt_pkg.cpython-38-x86_64-linux-gnu.so  /usr/lib/python3/dist-packages/apt_pkg.so
-    #     sudo ln -s /usr/lib/python3/dist-packages/netifaces.cpython-38-x86_64-linux-gnu.so  /usr/lib/python3/dist-packages/netifaces.so
     - name: Install system deps (ubuntu)
       if: runner.os == 'Linux'
       shell: bash
@@ -61,18 +41,22 @@ runs:
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Install system deps (OSX)
-      shell: bash
+    - uses: nick-fields/retry@v2
+      name: Install system deps (OSX)
       if: runner.os == 'macOS'
-      run: |
-        # 2023/01/16: || true needed because homebrew installation of whatever
-        # dependencies these packages requires manual intervention to fix, and I
-        # don't have a mac.
-        brew install parallel pssh ffmpeg || true
-        brew install --cask mactex || true
-        brew install --cask xquartz || true
-        python -m pip install --upgrade pip
-        python -m pip install wheel
+      with:
+        timeout_minutes: 10000
+        max_attempts: 3
+        shell: bash
+        command: |
+          # 2023/01/16: || true needed because homebrew installation of whatever
+          # dependencies these packages requires manual intervention to fix, and I
+          # don't have a mac.
+          brew update && brew install parallel pssh ffmpeg
+          brew update && brew install --cask mactex
+          brew update && brew install --cask xquartz
+          python -m pip install --upgrade pip
+          python -m pip install wheel
     ############################################################################
     # SIERRA install
@@ -80,7 +64,7 @@ runs:
     - name: Install SIERRA
       shell: bash
       run: |
-        python -m pip install -r docs/requirements.txt
+        python3 -m pip install -r docs/requirements.txt
         cd docs && make man && cd ..
         python3 -m pip install .
         python3 -m pip install .[devel]

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/argos.yml RENAMED Viewed

@@ -24,10 +24,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f bc_univar_sanity_test
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f bc_univar_sanity_test
       - uses: actions/upload-artifact@v3
         with:
@@ -49,10 +52,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f physics_engines_test
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f physics_engines_test
       - uses: actions/upload-artifact@v3
         with:
@@ -73,10 +79,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage1_univar_test
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage1_univar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -97,10 +106,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage2_univar_test -e hpc.local
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage2_univar_test -e hpc.local
       - uses: actions/upload-artifact@v3
         with:
@@ -123,10 +135,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f vc_test
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f vc_test
       - uses: actions/upload-artifact@v3
         with:
@@ -148,10 +163,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f cmdline_test
+      - uses: nick-fields/retry@v2
+        name: Integration tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f cmdline_test
       - uses: actions/upload-artifact@v3
         with:

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/coverage.yml RENAMED Viewed

@@ -12,6 +12,10 @@ on:
   schedule:
     - cron: '0 0 1 * *'
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 jobs:
   argos-ci:
     uses: ./.github/workflows/argos.yml

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/exec-env-plugins.yml RENAMED Viewed

@@ -13,9 +13,7 @@ on:
   #     # - devel
   #   paths:
   #     - 'sierra/**'
 jobs:
   adhoc:
     runs-on: ${{ inputs.os }}
     strategy:

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/integration-all.yml RENAMED Viewed

@@ -14,45 +14,60 @@ on:
     - cron: '0 0 1 * *'
 jobs:
-  argos-ci-ubuntu:
-    uses: ./.github/workflows/argos.yml
+  sierra-core-ci-ubuntu:
+    uses: ./.github/workflows/sierra-core.yml
     secrets: inherit
     with:
       os: ubuntu-20.04
-  argos-ci-osx:
-    uses: ./.github/workflows/argos.yml
+  sierra-core-ci-osx:
+    uses: ./.github/workflows/sierra-core.yml
     secrets: inherit
     with:
       os: macos-12
-  sierra-core-ci-ubuntu:
-    uses: ./.github/workflows/sierra-core.yml
+  argos-ci-ubuntu:
+    uses: ./.github/workflows/argos.yml
     secrets: inherit
+    needs:
+      - sierra-core-ci-ubuntu
     with:
       os: ubuntu-20.04
-  sierra-core-ci-osx:
-    uses: ./.github/workflows/sierra-core.yml
+  argos-ci-osx:
+    uses: ./.github/workflows/argos.yml
     secrets: inherit
+    needs:
+      - sierra-core-ci-osx
     with:
       os: macos-12
   ros1gazebo-ci-ubuntu:
     uses: ./.github/workflows/ros1gazebo.yml
     secrets: inherit
+    needs:
+      - sierra-core-ci-ubuntu
     with:
       os: ubuntu-20.04
   ros1robot-ci-ubuntu:
     uses: ./.github/workflows/ros1robot.yml
     secrets: inherit
+    needs:
+      - sierra-core-ci-ubuntu
     with:
       os: ubuntu-20.04
   exec-env-ci-ubuntu:
     uses: ./.github/workflows/exec-env-plugins.yml
     secrets: inherit
+    needs:
+      - sierra-core-ci-ubuntu
     with:
       os: ubuntu-20.04

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/sierra-core.yml RENAMED Viewed

@@ -8,7 +8,6 @@ on:
         type: string
 jobs:
   cmdline-opts:
     runs-on: ${{ inputs.os }}
     strategy:
@@ -24,9 +23,13 @@ jobs:
         with:
           platform: argos
-      - name: Cmdline Options
-        run: |
-          ./scripts/core-integration-tests.sh -f cmdline_opts_test
+      - uses: nick-fields/retry@v2
+        name: Cmdline options
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/core-integration-tests.sh -f cmdline_opts_test
       - uses: actions/upload-artifact@v3
         with:
@@ -48,9 +51,13 @@ jobs:
         with:
           platform: argos
-      - name: Environment variables
-        run: |
-          ./scripts/core-integration-tests.sh -f env_vars_test
+      - uses: nick-fields/retry@v2
+        name: Environment variables
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/core-integration-tests.sh -f env_vars_test
       - uses: actions/upload-artifact@v3
         with:
@@ -78,14 +85,22 @@ jobs:
           platform: ros1gazebo
           rosdistro: noetic
-      - name: Bivariate batch criteria sanity (ARGoS)
-        run: |
-          ./scripts/argos-integration-tests.sh -f bc_bivar_sanity_test
+      - uses: nick-fields/retry@v2
+        name: Bivariate batch criteria sanity (ARGoS)
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f bc_bivar_sanity_test
-      - name: Bivariate batch criteria sanity (ROS1+Gazebo)
+      - uses: nick-fields/retry@v2
         if: runner.os == 'Linux'
-        run: |
-          ./scripts/ros1gazebo-integration-tests.sh -f bc_bivar_sanity_test
+        name: Bivariate batch criteria sanity (ROS1+Gazebo)
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/ros1gazebo-integration-tests.sh -f bc_bivar_sanity_test
       - uses: actions/upload-artifact@v3
         with:
@@ -113,14 +128,22 @@ jobs:
           platform: ros1gazebo
           rosdistro: noetic
-      - name: Bivariate batch criteria stage 1 (ARGoS)
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage1_bivar_test
+      - uses: nick-fields/retry@v2
+        name: Bivariate batch criteria stage 1 (ARGoS)
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage1_bivar_test
-      - name: Bivariate batch criteria stage 1 (ROS1+Gazebo)
+      - uses: nick-fields/retry@v2
         if: runner.os == 'Linux'
-        run: |
-          ./scripts/ros1gazebo-integration-tests.sh -f stage1_bivar_test
+        name: Bivariate batch criteria stage 1 (ROS1+Gazebo)
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/ros1gazebo-integration-tests.sh -f stage1_bivar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -141,10 +164,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage3_univar_test
+      - uses: nick-fields/retry@v2
+        name: Stage3 univariate tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage3_univar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -165,10 +191,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage3_bivar_test
+      - uses: nick-fields/retry@v2
+        name: Stage3 bivariate tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage3_bivar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -189,10 +218,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage4_univar_test
+      - uses: nick-fields/retry@v2
+        name: Stage4 univariate tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage4_univar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -213,10 +245,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage5_univar_test
+      - uses: nick-fields/retry@v2
+        name: Stage5 univariate tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage5_univar_test
       - uses: actions/upload-artifact@v3
         with:
@@ -237,10 +272,13 @@ jobs:
         with:
           platform: argos
-      - name: Integration tests
-        shell: bash
-        run: |
-          ./scripts/argos-integration-tests.sh -f stage5_bivar_test
+      - uses: nick-fields/retry@v2
+        name: Stage5 univariate tests
+        with:
+          timeout_minutes: 3600
+          max_attempts: 3
+          shell: bash
+          command: ./scripts/argos-integration-tests.sh -f stage5_bivar_test
       - uses: actions/upload-artifact@v3
         with:

{sierra-research-1.3.1 → sierra-research-1.3.6}/.github/workflows/static-analysis.yml RENAMED Viewed

@@ -12,6 +12,9 @@ on:
   schedule:
     - cron: '0 0 1 * *'
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 jobs:
   analyze:

{sierra-research-1.3.1/sierra_research.egg-info → sierra-research-1.3.6}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: sierra-research
-Version: 1.3.1
+Version: 1.3.6
 Summary: Automation framework for the scientific method in AI research
 Home-page: https://github.com/jharwell/sierra
 Author: John Harwell
@@ -21,8 +21,47 @@ Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Software Development :: Libraries :: Application Frameworks
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
-Provides-Extra: devel
 License-File: LICENSE
+Requires-Dist: pyyaml
+Requires-Dist: pandas
+Requires-Dist: numpy
+Requires-Dist: matplotlib
+Requires-Dist: sympy
+Requires-Dist: psutil
+Requires-Dist: distro
+Requires-Dist: netifaces
+Requires-Dist: haggis
+Requires-Dist: coloredlogs
+Requires-Dist: implements
+Requires-Dist: retry
+Provides-Extra: devel
+Requires-Dist: pylint==2.14.5; extra == "devel"
+Requires-Dist: pytype; extra == "devel"
+Requires-Dist: pydocstyle; extra == "devel"
+Requires-Dist: xenon; extra == "devel"
+Requires-Dist: flake8; extra == "devel"
+Requires-Dist: nox; extra == "devel"
+Requires-Dist: psutil; extra == "devel"
+Requires-Dist: pytest; extra == "devel"
+Requires-Dist: pytest-cov; extra == "devel"
+Requires-Dist: mypy; extra == "devel"
+Requires-Dist: xmldiff; extra == "devel"
+Requires-Dist: coverage; extra == "devel"
+Requires-Dist: coveralls; extra == "devel"
+Requires-Dist: mypy-runner; extra == "devel"
+Requires-Dist: build; extra == "devel"
+Requires-Dist: twine; extra == "devel"
+Requires-Dist: setuptools; extra == "devel"
+Requires-Dist: sphinx==5.0.2; extra == "devel"
+Requires-Dist: docutils==0.18.1; extra == "devel"
+Requires-Dist: sphinx-rtd-theme; extra == "devel"
+Requires-Dist: sphinx-argparse; extra == "devel"
+Requires-Dist: sphinx-tabs; extra == "devel"
+Requires-Dist: sphinxcontrib-napoleon; extra == "devel"
+Requires-Dist: psutil; extra == "devel"
+Requires-Dist: sphinx-last-updated-by-git; extra == "devel"
+Requires-Dist: autoapi; extra == "devel"
+Requires-Dist: graphviz; extra == "devel"
 ===========================================================================
 SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
@@ -37,8 +76,8 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
 .. |supported-pythons| image:: https://img.shields.io/pypi/pyversions/sierra-research.svg
                        :target: https://pypi.python.org/pypi/sierra-research/
-.. |linux-supported| image:: https://svgshare.com/i/Zhy.svg
-.. |osx-supported| image:: https://svgshare.com/i/ZjP.svg
+.. |linux-supported| image:: https://img.shields.io/badge/os-Linux-crimson
+.. |osx-supported| image:: https://img.shields.io/badge/os-OSX-crimson
 .. |ci-integration-master| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=master
 .. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=master

{sierra-research-1.3.1 → sierra-research-1.3.6}/README.rst RENAMED Viewed

@@ -11,8 +11,8 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
 .. |supported-pythons| image:: https://img.shields.io/pypi/pyversions/sierra-research.svg
                        :target: https://pypi.python.org/pypi/sierra-research/
-.. |linux-supported| image:: https://svgshare.com/i/Zhy.svg
-.. |osx-supported| image:: https://svgshare.com/i/ZjP.svg
+.. |linux-supported| image:: https://img.shields.io/badge/os-Linux-crimson
+.. |osx-supported| image:: https://img.shields.io/badge/os-OSX-crimson
 .. |ci-integration-master| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=master
 .. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=master

sierra-research 1.3.1__tar.gz → 1.3.6__tar.gz

sierra-research 1.3.1tar.gz → 1.3.6tar.gz