shachen 0.1.0__tar.gz

shachen-0.1.0/LICENSE

@@ -0,0 +1,201 @@
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shachen-0.1.0/NOTICE

@@ -0,0 +1,16 @@
+shachen
+Copyright 2026 Han Xiao
+
+This product includes an independent implementation of the DEBRA-Dust
+algorithm described in:
+
+  Miller, S. D., Bankert, R. L., Grasso, L. D., Lindsey, D. T., Kuciauskas,
+  A. P., & Combs, C. L. (2017). A dynamic enhancement with background
+  reduction algorithm: Overview and application to satellite-based dust storm
+  detection. Journal of Geophysical Research: Atmospheres, 122, 12,938-12,959.
+  https://doi.org/10.1002/2017JD027365
+
+  Equations follow the erratum published 26 February 2020.
+
+The paper is not distributed with this software. This implementation is not
+produced, endorsed, or verified by the paper's authors, by CIRA, or by NOAA.

shachen-0.1.0/PKG-INFO

@@ -0,0 +1,180 @@
+Metadata-Version: 2.4
+Name: shachen
+Version: 0.1.0
+Summary: Infrared satellite dust storm detection — an open implementation of the DEBRA-Dust algorithm for GOES ABI and Himawari AHI
+Keywords: dust,dust-storm,sand-dust,DEBRA,satellite,remote-sensing,infrared,split-window,aerosol,GOES,ABI,Himawari,AHI,atmospheric-science
+Author: Han Xiao
+Author-email: Han Xiao <ringsaturn.me@gmail.com>
+License-Expression: Apache-2.0
+License-File: LICENSE
+License-File: NOTICE
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
+Classifier: Topic :: Scientific/Engineering :: Image Processing
+Requires-Dist: global-land-mask>=1.0.0
+Requires-Dist: numpy>=2.5.2
+Requires-Dist: pyorbital>=1.12.1
+Requires-Dist: pyresample>=1.35.0
+Requires-Dist: scipy>=1.18.1
+Requires-Dist: xarray>=2026.7.0
+Requires-Dist: shachen[satellite,data,render] ; extra == 'all'
+Requires-Dist: earthaccess>=0.18.0 ; extra == 'data'
+Requires-Dist: netcdf4>=1.7.4 ; extra == 'data'
+Requires-Dist: s3fs>=2026.7.0 ; extra == 'data'
+Requires-Dist: cartopy>=0.25.0 ; extra == 'render'
+Requires-Dist: matplotlib>=3.11.1 ; extra == 'render'
+Requires-Dist: satpy>=0.45 ; extra == 'satellite'
+Requires-Dist: dask>=2026.7.1 ; extra == 'satellite'
+Requires-Dist: netcdf4>=1.7.4 ; extra == 'satellite'
+Requires-Python: >=3.12
+Project-URL: Homepage, https://github.com/ringsaturn/shachen
+Project-URL: Repository, https://github.com/ringsaturn/shachen
+Project-URL: Issues, https://github.com/ringsaturn/shachen/issues
+Project-URL: Paper, https://doi.org/10.1002/2017JD027365
+Provides-Extra: all
+Provides-Extra: data
+Provides-Extra: render
+Provides-Extra: satellite
+Description-Content-Type: text/markdown
+
+# shachen (沙尘)
+
+Infrared satellite **dust storm detection** in Python — an open implementation
+of **DEBRA-Dust**, the Dynamic Enhancement with Background Reduction Algorithm
+(Miller et al. 2017, [doi:10.1002/2017JD027365](https://doi.org/10.1002/2017JD027365)),
+for GOES ABI and Himawari AHI.
+
+*shachen* (沙尘) is Chinese for "sand and dust". The package is a home for
+infrared-channel dust algorithms; DEBRA-Dust is the first one.
+
+This appears to be the first public implementation of DEBRA.
+
+> **All equations follow the erratum published 26 February 2020**, not the
+> figures as originally printed.
+
+![DEBRA-Dust enhanced imagery from GOES-16 ABI and Himawari-8 AHI](docs/img/dust-cases.png)
+
+Dust is the yellow modulation; everything else stays in greyscale infrared.
+Left is the case from the paper's Figure 6. Both panels come straight out of
+`scripts/run_case.py`, one per sensor.
+
+## What it does
+
+DEBRA turns the split-window infrared signal that is specific to *mineral*
+dust into a per-pixel confidence field, by comparing each pixel against a
+dynamically estimated **clear-sky background** rather than a fixed threshold.
+That background is what lets it work over bright, emissivity-heterogeneous
+desert surfaces where fixed thresholds produce false alarms.
+
+```
+io.satellite.load_scene   L1b → bt_* / refl_* on the 2 km fixed grid (satpy)
+        │
+        ▼
+pipeline.run_debra
+├─ geo.regrid_latlon      MERRA-2 / CAMEL → satellite grid
+├─ solar                  per-pixel solar zenith (day / twilight / night mix)
+├─ background             scheme A: CAMEL emissivity × Planck(MERRA-2 skin T)
+│    or composite         scheme B: 14-day cloud-cleared same-hour composite
+├─ cloudmask              Eqs. 1–12, including the dust restoral term
+├─ dust_tests             DT1–DT3, Eqs. 13–15, normalised per-pixel
+├─ confidence             Eqs. 16–22 → cf_comb
+├─ imagery                Eqs. 23–29, CF-modulated RGB
+└─ render                 georeferenced PNG with coastlines (cartopy)
+```
+
+Only one background scheme is used at a time: `run_debra` requires exactly one
+of `emissivity=` or `background=`. The composite scheme carries the
+split-window water-vapour depression that the semi-analytic one lacks.
+
+## Documentation
+
+**<https://ringsaturn.github.io/shachen/>** — user guide, all 29 equations as
+implemented, full API reference, and the deviations page.
+
+```sh
+make -C docs html      # → docs/_build/html/index.html
+make -C docs latexpdf  # → docs/_build/latex/shachen.pdf (needs a TeX install)
+```
+
+## Install
+
+The core install is small — it runs the entire algorithm on fields you already
+have in memory, and pulls in no I/O or plotting stack:
+
+```sh
+pip install shachen
+```
+
+Add what you need on top:
+
+```sh
+pip install "shachen[satellite]"   # satpy: read and calibrate ABI/AHI L1b
+pip install "shachen[data]"        # earthaccess/s3fs: fetch MERRA-2, CAMEL, L1b
+pip install "shachen[render]"      # cartopy/matplotlib: georeferenced PNG
+pip install "shachen[all]"         # everything, for the reproduction scripts
+```
+
+`import shachen` pulls in none of the extras.
+
+## Usage
+
+```python
+import shachen
+
+result = shachen.run_debra(scene, emissivity=camel, skin_temperature=merra_ts)
+result["cf_comb"]        # combined dust confidence, 0–1
+```
+
+What `scene` must contain, the two background schemes, and the imagery chain
+are covered in the [user guide](https://ringsaturn.github.io/shachen/guide.html).
+
+Reproducing a reference case end to end needs `[all]` plus an
+[Earthdata](https://urs.earthdata.nasa.gov/) login in `~/.netrc` (MERRA-2 and
+CAMEL are authenticated downloads; GOES L1b on AWS S3 is anonymous):
+
+```sh
+python scripts/fetch_case.py 2017-03-23-swus   # the paper's Figure 6 case
+python scripts/run_case.py   2017-03-23-swus   # → netCDF + PNG
+```
+
+## Deviations from the paper
+
+Three printed equations are inconsistent with the paper's own prose and figures
+even after the erratum, and are implemented per the prose:
+
+| Equation | Deviation |
+|---|---|
+| Eq. 4 (CM2) | Magnitude reversed — as printed it saturates the cloud mask over clear sky |
+| Eq. 11 (CM_day) | Uses CM3, not the misprinted CM4 (the 3.9 µm test is night-only) |
+| Eq. 15 (DT3) | Magnitude reversed — the printed form contradicts the stated intent |
+
+Plus one substitution (CAMEL emissivity for the registration-walled UWBF) and
+one opt-in per-sensor retune.
+
+**All of it, with the reasoning and the numbers, is in
+[`docs/deviations.md`](docs/deviations.md).** Read that before changing any of
+it. `constants.py` is the single source of every calibration bound, offset and
+weight from the paper, unit-tested against an independent transcription.
+
+## Citation
+
+If you use this software, please cite the original algorithm:
+
+> Miller, S. D., Bankert, R. L., Grasso, L. D., Lindsey, D. T., Kuciauskas,
+> A. P., & Combs, C. L. (2017). A dynamic enhancement with background reduction
+> algorithm: Overview and application to satellite-based dust storm detection.
+> *Journal of Geophysical Research: Atmospheres*, 122, 12,938–12,959.
+> https://doi.org/10.1002/2017JD027365
+
+and, for the implementation, the metadata in `CITATION.cff`.
+
+This is an independent implementation. It is not produced, endorsed, or
+verified by the paper's authors, by CIRA, or by NOAA.
+
+## License
+
+[Apache-2.0](LICENSE). See `NOTICE` for attribution requirements.

shachen-0.1.0/README.md

@@ -0,0 +1,137 @@
+# shachen (沙尘)
+
+Infrared satellite **dust storm detection** in Python — an open implementation
+of **DEBRA-Dust**, the Dynamic Enhancement with Background Reduction Algorithm
+(Miller et al. 2017, [doi:10.1002/2017JD027365](https://doi.org/10.1002/2017JD027365)),
+for GOES ABI and Himawari AHI.
+
+*shachen* (沙尘) is Chinese for "sand and dust". The package is a home for
+infrared-channel dust algorithms; DEBRA-Dust is the first one.
+
+This appears to be the first public implementation of DEBRA.
+
+> **All equations follow the erratum published 26 February 2020**, not the
+> figures as originally printed.
+
+![DEBRA-Dust enhanced imagery from GOES-16 ABI and Himawari-8 AHI](docs/img/dust-cases.png)
+
+Dust is the yellow modulation; everything else stays in greyscale infrared.
+Left is the case from the paper's Figure 6. Both panels come straight out of
+`scripts/run_case.py`, one per sensor.
+
+## What it does
+
+DEBRA turns the split-window infrared signal that is specific to *mineral*
+dust into a per-pixel confidence field, by comparing each pixel against a
+dynamically estimated **clear-sky background** rather than a fixed threshold.
+That background is what lets it work over bright, emissivity-heterogeneous
+desert surfaces where fixed thresholds produce false alarms.
+
+```
+io.satellite.load_scene   L1b → bt_* / refl_* on the 2 km fixed grid (satpy)
+        │
+        ▼
+pipeline.run_debra
+├─ geo.regrid_latlon      MERRA-2 / CAMEL → satellite grid
+├─ solar                  per-pixel solar zenith (day / twilight / night mix)
+├─ background             scheme A: CAMEL emissivity × Planck(MERRA-2 skin T)
+│    or composite         scheme B: 14-day cloud-cleared same-hour composite
+├─ cloudmask              Eqs. 1–12, including the dust restoral term
+├─ dust_tests             DT1–DT3, Eqs. 13–15, normalised per-pixel
+├─ confidence             Eqs. 16–22 → cf_comb
+├─ imagery                Eqs. 23–29, CF-modulated RGB
+└─ render                 georeferenced PNG with coastlines (cartopy)
+```
+
+Only one background scheme is used at a time: `run_debra` requires exactly one
+of `emissivity=` or `background=`. The composite scheme carries the
+split-window water-vapour depression that the semi-analytic one lacks.
+
+## Documentation
+
+**<https://ringsaturn.github.io/shachen/>** — user guide, all 29 equations as
+implemented, full API reference, and the deviations page.
+
+```sh
+make -C docs html      # → docs/_build/html/index.html
+make -C docs latexpdf  # → docs/_build/latex/shachen.pdf (needs a TeX install)
+```
+
+## Install
+
+The core install is small — it runs the entire algorithm on fields you already
+have in memory, and pulls in no I/O or plotting stack:
+
+```sh
+pip install shachen
+```
+
+Add what you need on top:
+
+```sh
+pip install "shachen[satellite]"   # satpy: read and calibrate ABI/AHI L1b
+pip install "shachen[data]"        # earthaccess/s3fs: fetch MERRA-2, CAMEL, L1b
+pip install "shachen[render]"      # cartopy/matplotlib: georeferenced PNG
+pip install "shachen[all]"         # everything, for the reproduction scripts
+```
+
+`import shachen` pulls in none of the extras.
+
+## Usage
+
+```python
+import shachen
+
+result = shachen.run_debra(scene, emissivity=camel, skin_temperature=merra_ts)
+result["cf_comb"]        # combined dust confidence, 0–1
+```
+
+What `scene` must contain, the two background schemes, and the imagery chain
+are covered in the [user guide](https://ringsaturn.github.io/shachen/guide.html).
+
+Reproducing a reference case end to end needs `[all]` plus an
+[Earthdata](https://urs.earthdata.nasa.gov/) login in `~/.netrc` (MERRA-2 and
+CAMEL are authenticated downloads; GOES L1b on AWS S3 is anonymous):
+
+```sh
+python scripts/fetch_case.py 2017-03-23-swus   # the paper's Figure 6 case
+python scripts/run_case.py   2017-03-23-swus   # → netCDF + PNG
+```
+
+## Deviations from the paper
+
+Three printed equations are inconsistent with the paper's own prose and figures
+even after the erratum, and are implemented per the prose:
+
+| Equation | Deviation |
+|---|---|
+| Eq. 4 (CM2) | Magnitude reversed — as printed it saturates the cloud mask over clear sky |
+| Eq. 11 (CM_day) | Uses CM3, not the misprinted CM4 (the 3.9 µm test is night-only) |
+| Eq. 15 (DT3) | Magnitude reversed — the printed form contradicts the stated intent |
+
+Plus one substitution (CAMEL emissivity for the registration-walled UWBF) and
+one opt-in per-sensor retune.
+
+**All of it, with the reasoning and the numbers, is in
+[`docs/deviations.md`](docs/deviations.md).** Read that before changing any of
+it. `constants.py` is the single source of every calibration bound, offset and
+weight from the paper, unit-tested against an independent transcription.
+
+## Citation
+
+If you use this software, please cite the original algorithm:
+
+> Miller, S. D., Bankert, R. L., Grasso, L. D., Lindsey, D. T., Kuciauskas,
+> A. P., & Combs, C. L. (2017). A dynamic enhancement with background reduction
+> algorithm: Overview and application to satellite-based dust storm detection.
+> *Journal of Geophysical Research: Atmospheres*, 122, 12,938–12,959.
+> https://doi.org/10.1002/2017JD027365
+
+and, for the implementation, the metadata in `CITATION.cff`.
+
+This is an independent implementation. It is not produced, endorsed, or
+verified by the paper's authors, by CIRA, or by NOAA.
+
+## License
+
+[Apache-2.0](LICENSE). See `NOTICE` for attribution requirements.

shachen-0.1.0/pyproject.toml

@@ -0,0 +1,102 @@
+[project]
+name = "shachen"
+version = "0.1.0"
+description = "Infrared satellite dust storm detection — an open implementation of the DEBRA-Dust algorithm for GOES ABI and Himawari AHI"
+readme = "README.md"
+license = "Apache-2.0"
+license-files = [
+    "LICENSE",
+    "NOTICE",
+]
+requires-python = ">=3.12"
+keywords = [
+    "dust",
+    "dust-storm",
+    "sand-dust",
+    "DEBRA",
+    "satellite",
+    "remote-sensing",
+    "infrared",
+    "split-window",
+    "aerosol",
+    "GOES",
+    "ABI",
+    "Himawari",
+    "AHI",
+    "atmospheric-science",
+]
+classifiers = [
+    "Development Status :: 3 - Alpha",
+    "Intended Audience :: Science/Research",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Topic :: Scientific/Engineering :: Atmospheric Science",
+    "Topic :: Scientific/Engineering :: Image Processing",
+]
+dependencies = [
+    "global-land-mask>=1.0.0",
+    "numpy>=2.5.2",
+    "pyorbital>=1.12.1",
+    "pyresample>=1.35.0",
+    "scipy>=1.18.1",
+    "xarray>=2026.7.0",
+]
+
+[[project.authors]]
+name = "Han Xiao"
+email = "ringsaturn.me@gmail.com"
+
+[project.urls]
+Homepage = "https://github.com/ringsaturn/shachen"
+Repository = "https://github.com/ringsaturn/shachen"
+Issues = "https://github.com/ringsaturn/shachen/issues"
+Paper = "https://doi.org/10.1002/2017JD027365"
+
+[project.optional-dependencies]
+satellite = [
+    "satpy>=0.45",
+    "dask>=2026.7.1",
+    "netcdf4>=1.7.4",
+]
+data = [
+    "earthaccess>=0.18.0",
+    "netcdf4>=1.7.4",
+    "s3fs>=2026.7.0",
+]
+render = [
+    "cartopy>=0.25.0",
+    "matplotlib>=3.11.1",
+]
+all = ["shachen[satellite,data,render]"]
+
+[tool.ruff]
+line-length = 100
+
+[tool.ruff.lint]
+select = [
+    "E4",
+    "E7",
+    "E9",
+    "F",
+    "I",
+    "UP",
+    "B",
+]
+
+[build-system]
+requires = ["uv_build>=0.11.31,<0.12.0"]
+build-backend = "uv_build"
+
+[dependency-groups]
+dev = [
+    "pytest>=9.1.1",
+    "ruff>=0.16.4",
+    "shachen[all]",
+]
+docs = [
+    "furo>=2024.8.6",
+    "myst-parser>=4.0.0",
+    "sphinx>=8.1.3",
+    "sphinx-copybutton>=0.5.2",
+]