seqpro 0.8.1__tar.gz → 0.8.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. {seqpro-0.8.1 → seqpro-0.8.2}/CHANGELOG.md +6 -0
  2. {seqpro-0.8.1 → seqpro-0.8.2}/PKG-INFO +1 -1
  3. {seqpro-0.8.1 → seqpro-0.8.2}/pyproject.toml +1 -1
  4. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/_array.py +1 -1
  5. {seqpro-0.8.1 → seqpro-0.8.2}/.gitattributes +0 -0
  6. {seqpro-0.8.1 → seqpro-0.8.2}/.github/workflows/bump.yaml +0 -0
  7. {seqpro-0.8.1 → seqpro-0.8.2}/.github/workflows/merge.yaml +0 -0
  8. {seqpro-0.8.1 → seqpro-0.8.2}/.github/workflows/publish.yaml +0 -0
  9. {seqpro-0.8.1 → seqpro-0.8.2}/.github/workflows/test.yaml +0 -0
  10. {seqpro-0.8.1 → seqpro-0.8.2}/.gitignore +0 -0
  11. {seqpro-0.8.1 → seqpro-0.8.2}/.pre-commit-config.yaml +0 -0
  12. {seqpro-0.8.1 → seqpro-0.8.2}/Cargo.lock +0 -0
  13. {seqpro-0.8.1 → seqpro-0.8.2}/Cargo.toml +0 -0
  14. {seqpro-0.8.1 → seqpro-0.8.2}/LICENSE +0 -0
  15. {seqpro-0.8.1 → seqpro-0.8.2}/README.md +0 -0
  16. {seqpro-0.8.1 → seqpro-0.8.2}/meta.yaml +0 -0
  17. {seqpro-0.8.1 → seqpro-0.8.2}/pixi.lock +0 -0
  18. {seqpro-0.8.1 → seqpro-0.8.2}/pixi.toml +0 -0
  19. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/__init__.py +0 -0
  20. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_analyzers.py +0 -0
  21. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_cleaners.py +0 -0
  22. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_encoders.py +0 -0
  23. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_modifiers.py +0 -0
  24. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_numba.py +0 -0
  25. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_types.py +0 -0
  26. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_utils.py +0 -0
  27. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/alphabets/__init__.py +0 -0
  28. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/alphabets/_alphabets.py +0 -0
  29. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/bed.py +0 -0
  30. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/experimental/_experimental.py +0 -0
  31. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/experimental/_visualizers.py +0 -0
  32. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/gtf.py +0 -0
  33. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/py.typed +0 -0
  34. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/__init__.py +0 -0
  35. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/_gufuncs.py +0 -0
  36. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/_types.py +0 -0
  37. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/_utils.py +0 -0
  38. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/transforms/__init__.py +0 -0
  39. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/transforms/augmentation.py +0 -0
  40. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/transforms/tmm.py +0 -0
  41. {seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/xr/__init__.py +0 -0
  42. {seqpro-0.8.1 → seqpro-0.8.2}/src/kshuffle.rs +0 -0
  43. {seqpro-0.8.1 → seqpro-0.8.2}/src/lib.rs +0 -0
  44. {seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_pyranges.py +0 -0
  45. {seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_read.py +0 -0
  46. {seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_sort.py +0 -0
  47. {seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_with_length.py +0 -0
  48. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_analyzers.py +0 -0
  49. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_modifiers.py +0 -0
  50. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_ohe.py +0 -0
  51. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_ragged.py +0 -0
  52. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_tokenize.py +0 -0
  53. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_transforms.py +0 -0
  54. {seqpro-0.8.1 → seqpro-0.8.2}/tests/test_translate.py +0 -0
{seqpro-0.8.1 → seqpro-0.8.2}/CHANGELOG.md RENAMED
@@ -1,3 +1,9 @@
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+ ## 0.8.2 (2025-10-22)
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+
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+ ### Fix
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+
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+ - wrong shape of Ragged[bytes].to_numpy()
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+
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  ## 0.8.1 (2025-10-22)
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  ### Fix
{seqpro-0.8.1 → seqpro-0.8.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: seqpro
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- Version: 0.8.1
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+ Version: 0.8.2
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  Classifier: Programming Language :: Rust
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  Classifier: Programming Language :: Python :: Implementation :: CPython
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  Classifier: Programming Language :: Python :: Implementation :: PyPy
{seqpro-0.8.1 → seqpro-0.8.2}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "seqpro"
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- version = "0.8.1"
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+ version = "0.8.2"
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  authors = [
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  { name = "David Laub", email = "dlaub@ucsd.edu" },
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  { name = "Adam Klie", email = "aklie@ucsd.edu" },
{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/rag/_array.py RENAMED
@@ -223,7 +223,7 @@ class Ragged(ak.Array, Generic[RDTYPE]):
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  """Note: not zero-copy if offsets or data are non-contiguous."""
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  arr = super().to_numpy(allow_missing=allow_missing)
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  if self.dtype.type == np.bytes_:
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- arr = arr[:, None].view("S1")
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+ arr = arr[..., None].view("S1")
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  return arr
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  def __getitem__(self, where):
{seqpro-0.8.1 → seqpro-0.8.2}/.gitattributes RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/.gitignore RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/.pre-commit-config.yaml RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/Cargo.lock RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/Cargo.toml RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/LICENSE RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/README.md RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/meta.yaml RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/pixi.lock RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/pixi.toml RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/__init__.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_numba.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_types.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/_utils.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/bed.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/gtf.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/python/seqpro/py.typed RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/src/kshuffle.rs RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/src/lib.rs RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_read.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/bed/test_sort.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_analyzers.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_modifiers.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_ohe.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_ragged.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_tokenize.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_transforms.py RENAMED
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{seqpro-0.8.1 → seqpro-0.8.2}/tests/test_translate.py RENAMED
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