seqevi 0.3.2__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (80) hide show
  1. {seqevi-0.3.2 → seqevi-0.3.3}/PKG-INFO +3 -3
  2. {seqevi-0.3.2 → seqevi-0.3.3}/README.md +2 -2
  3. {seqevi-0.3.2 → seqevi-0.3.3}/pyproject.toml +1 -1
  4. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/__init__.py +1 -1
  5. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_cli.py +1 -1
  6. {seqevi-0.3.2 → seqevi-0.3.3}/LICENSE +0 -0
  7. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/__main__.py +0 -0
  8. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/__init__.py +0 -0
  9. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/base.py +0 -0
  10. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/dbcan_cazyme.py +0 -0
  11. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/eggnog.py +0 -0
  12. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/interpro_pfam.py +0 -0
  13. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/adapters/registry.py +0 -0
  14. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/annotate.py +0 -0
  15. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/api.py +0 -0
  16. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/cli.py +0 -0
  17. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/distribution/__init__.py +0 -0
  18. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/distribution/manifest.py +0 -0
  19. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/distribution/oci.py +0 -0
  20. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/distribution/setup.py +0 -0
  21. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/errors.py +0 -0
  22. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/evidence.py +0 -0
  23. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/execution_profile.py +0 -0
  24. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/hashing.py +0 -0
  25. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/kits/__init__.py +0 -0
  26. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/kits/dbcan-cazyme.toml +0 -0
  27. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/resource_lock.py +0 -0
  28. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/result.py +0 -0
  29. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/runner.py +0 -0
  30. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/runtime_identity.py +0 -0
  31. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/sequence.py +0 -0
  32. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/service/__init__.py +0 -0
  33. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/service/app.py +0 -0
  34. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/service/config.py +0 -0
  35. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/service/persistence.py +0 -0
  36. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/__init__.py +0 -0
  37. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/_artifact_reader.py +0 -0
  38. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/_resolver.py +0 -0
  39. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/artifact.py +0 -0
  40. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/client.py +0 -0
  41. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/contract.py +0 -0
  42. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/factory.py +0 -0
  43. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/local.py +0 -0
  44. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migration.py +0 -0
  45. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/__init__.py +0 -0
  46. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/env.py +0 -0
  47. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/versions/0001_initial_store.py +0 -0
  48. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/versions/0002_artifact_byte_size_bigint.py +0 -0
  49. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/versions/0003_evidence_claim_leases.py +0 -0
  50. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/versions/0004_claim_sessions.py +0 -0
  51. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/migrations/versions/__init__.py +0 -0
  52. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/schema.py +0 -0
  53. {seqevi-0.3.2 → seqevi-0.3.3}/src/seqevi/store/transport.py +0 -0
  54. {seqevi-0.3.2 → seqevi-0.3.3}/tests/__init__.py +0 -0
  55. {seqevi-0.3.2 → seqevi-0.3.3}/tests/support.py +0 -0
  56. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_acceptance_containment.py +0 -0
  57. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_acceptance_harnesses.py +0 -0
  58. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_annotate.py +0 -0
  59. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_api.py +0 -0
  60. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_architecture_contracts.py +0 -0
  61. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_artifact_store.py +0 -0
  62. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_claim_leases.py +0 -0
  63. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_dbcan_cazyme.py +0 -0
  64. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_dbcan_image_assets.py +0 -0
  65. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_dbcan_local_candidate_harness.py +0 -0
  66. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_deployment_assets.py +0 -0
  67. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_eggnog.py +0 -0
  68. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_evidence.py +0 -0
  69. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_execution_profile.py +0 -0
  70. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_incremental_reuse.py +0 -0
  71. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_interpro_pfam.py +0 -0
  72. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_local_store.py +0 -0
  73. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_managed_setup.py +0 -0
  74. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_oci.py +0 -0
  75. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_resource_lock.py +0 -0
  76. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_result_prototype.py +0 -0
  77. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_runner.py +0 -0
  78. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_runtime_identity.py +0 -0
  79. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_sequence.py +0 -0
  80. {seqevi-0.3.2 → seqevi-0.3.3}/tests/test_shared_store.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: seqevi
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- Version: 0.3.2
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+ Version: 0.3.3
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  Summary: Content-addressed, reusable protein sequence annotation evidence.
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  Author-Email: Fuqing Zhang <fu.qing.zhang.work@gmail.com>, FuqingZhang <103730099+FuqingZh@users.noreply.github.com>
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  License-Expression: MIT
@@ -45,11 +45,11 @@ single-file DuckDB result for the current FASTA.
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  ## Status
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  The target architecture and v1.1 result contracts are approved. The SeqEvi
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- The 0.3.2 candidate source tree uses strict protein sequence identity, the single-host
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+ 0.3.3 source tree uses strict protein sequence identity, the single-host
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  SQLite/POSIX Store, the external tool runner, exact cache-miss orchestration,
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  and atomic DuckDB result materialization.
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- SeqEvi 0.3.2 provides managed setup for dbCAN only. The `eggnog` and
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+ SeqEvi 0.3.3 provides managed setup for dbCAN only. The `eggnog` and
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  `interpro-pfam` adapters remain supported through explicit runtimes and named
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  host profiles; managed setup for them is later feature work. The
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  [Slice D gate record](docs/benchmarks/20260806-v1.4-dbcan-public-release-gate.md)
@@ -11,11 +11,11 @@ single-file DuckDB result for the current FASTA.
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  ## Status
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  The target architecture and v1.1 result contracts are approved. The SeqEvi
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- The 0.3.2 candidate source tree uses strict protein sequence identity, the single-host
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+ 0.3.3 source tree uses strict protein sequence identity, the single-host
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  SQLite/POSIX Store, the external tool runner, exact cache-miss orchestration,
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  and atomic DuckDB result materialization.
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- SeqEvi 0.3.2 provides managed setup for dbCAN only. The `eggnog` and
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+ SeqEvi 0.3.3 provides managed setup for dbCAN only. The `eggnog` and
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  `interpro-pfam` adapters remain supported through explicit runtimes and named
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  host profiles; managed setup for them is later feature work. The
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  [Slice D gate record](docs/benchmarks/20260806-v1.4-dbcan-public-release-gate.md)
@@ -1,6 +1,6 @@
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  [project]
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  name = "seqevi"
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- version = "0.3.2"
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+ version = "0.3.3"
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  description = "Content-addressed, reusable protein sequence annotation evidence."
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  authors = [
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  { name = "Fuqing Zhang", email = "fu.qing.zhang.work@gmail.com" },
@@ -1,6 +1,6 @@
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  """Content-addressed protein sequence annotation evidence."""
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- __version__ = "0.3.2"
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+ __version__ = "0.3.3"
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  from .api import annotate, scan_annotations
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@@ -25,7 +25,7 @@ def test_cli_reports_version() -> None:
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  result = runner.invoke(app, ["--version"])
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  assert result.exit_code == 0
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- assert result.stdout.strip() == "0.3.2"
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+ assert result.stdout.strip() == "0.3.3"
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  def test_cli_without_command_describes_current_surface() -> None:
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