seqbuild 0.0.4__tar.gz → 0.0.6__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {seqbuild-0.0.4 → seqbuild-0.0.6}/PKG-INFO +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/pyproject.toml +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/fraction.py +2 -2
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/multi_metric.py +6 -6
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/not_equals.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/nvec_gen.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/seqcov_perm.py +1 -1
- seqbuild-0.0.6/seqbuild/face/__init__.py +3 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/face/cl_guide_parser.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/face/cmd_proc.py +2 -2
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/face/make_cmd.py +12 -12
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/idectree.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/lcg_v2.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/n2mvf_autogen.py +5 -5
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/poly_output_fitter_.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/process_seq.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/seq_struct.py +1 -1
- seqbuild-0.0.6/seqbuild/mini_dm/__init__.py +1 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/ag_ext.py +4 -4
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/n2m.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/n2m_index.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/vs_fit.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/vs_srch.py +2 -2
- seqbuild-0.0.6/seqbuild/seqgen/__init__.py +4 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/gg_gen.py +2 -2
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/idt_gen.py +3 -3
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/mdr_gen.py +2 -2
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/optri_gen.py +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/rch_gen.py +2 -2
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/shadow_gen.py +7 -7
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/ssi_load.py +3 -3
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild.egg-info/PKG-INFO +1 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild.egg-info/SOURCES.txt +0 -1
- {seqbuild-0.0.4 → seqbuild-0.0.6}/setup.py +1 -1
- seqbuild-0.0.4/seqbuild/face/__init__.py +0 -3
- seqbuild-0.0.4/seqbuild/mini_dm/__init__.py +0 -1
- seqbuild-0.0.4/seqbuild/mini_dm/hg.py +0 -6
- seqbuild-0.0.4/seqbuild/seqgen/__init__.py +0 -4
- {seqbuild-0.0.4 → seqbuild-0.0.6}/LICENSE.txt +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/README.md +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/__init__.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/__init__.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/approximators.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/desi/differentials.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/face/comm_lang.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/face/sb_ui.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/__init__.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/extraneous.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/idt_proc.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/intfactor.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/lcg_v3.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/mdr_v2.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/mod_prng.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/pof_autogen.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/prng_pw_op.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/intigers/tvec.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/csrch.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/iseq.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/matfactor_eval.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/minmax_freq.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/n2m_function.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/ngram.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/nsfr.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/puc.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/sp_op.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/vs_fit_mem.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/mini_dm/vs_fit_op.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/sb_crypt.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild/seqgen/ssi_netop.py +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild.egg-info/dependency_links.txt +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/seqbuild.egg-info/top_level.txt +0 -0
- {seqbuild-0.0.4 → seqbuild-0.0.6}/setup.cfg +0 -0
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
from intigers.seq_struct import *
|
|
2
|
-
from intigers.extraneous import zero_div0
|
|
1
|
+
from ..intigers.seq_struct import *
|
|
2
|
+
from ..intigers.extraneous import zero_div0
|
|
3
3
|
from morebs2.numerical_generator import modulo_in_range
|
|
4
4
|
from morebs2.matrix_methods import is_valid_range,float_to_string
|
|
5
5
|
from types import MethodType,FunctionType
|
|
@@ -1,9 +1,9 @@
|
|
|
1
|
-
from intigers.mdr_v2 import *
|
|
2
|
-
from intigers.extraneous import *
|
|
3
|
-
from intigers.tvec import *
|
|
4
|
-
from intigers.intfactor import *
|
|
5
|
-
from mini_dm.ag_ext import *
|
|
6
|
-
from mini_dm.ngram import *
|
|
1
|
+
from ..intigers.mdr_v2 import *
|
|
2
|
+
from ..intigers.extraneous import *
|
|
3
|
+
from ..intigers.tvec import *
|
|
4
|
+
from ..intigers.intfactor import *
|
|
5
|
+
from ..mini_dm.ag_ext import *
|
|
6
|
+
from ..mini_dm.ngram import *
|
|
7
7
|
from morebs2.seq_repr import *
|
|
8
8
|
|
|
9
9
|
"""
|
|
@@ -6,8 +6,8 @@ the seqbuild program's main functional features.
|
|
|
6
6
|
|
|
7
7
|
from .make_cmd import *
|
|
8
8
|
from morebs2.matrix_methods import cr
|
|
9
|
-
from mini_dm.nsfr import *
|
|
10
|
-
from intigers.mod_prng import *
|
|
9
|
+
from ..mini_dm.nsfr import *
|
|
10
|
+
from ..intigers.mod_prng import *
|
|
11
11
|
|
|
12
12
|
import io
|
|
13
13
|
import pickle
|
|
@@ -1,15 +1,15 @@
|
|
|
1
|
-
from seqgen.gg_gen import *
|
|
2
|
-
from seqgen.mdr_gen import *
|
|
3
|
-
from seqgen.optri_gen import *
|
|
4
|
-
from seqgen.rch_gen import *
|
|
5
|
-
from seqgen.idt_gen import *
|
|
6
|
-
from seqgen.shadow_gen import *
|
|
7
|
-
from desi.fraction import *
|
|
8
|
-
from desi.differentials import *
|
|
9
|
-
from intigers.lcg_v3 import *
|
|
10
|
-
from intigers.prng_pw_op import *
|
|
11
|
-
from seqgen.sb_crypt import *
|
|
12
|
-
from seqgen.ssi_netop import *
|
|
1
|
+
from ..seqgen.gg_gen import *
|
|
2
|
+
from ..seqgen.mdr_gen import *
|
|
3
|
+
from ..seqgen.optri_gen import *
|
|
4
|
+
from ..seqgen.rch_gen import *
|
|
5
|
+
from ..seqgen.idt_gen import *
|
|
6
|
+
from ..seqgen.shadow_gen import *
|
|
7
|
+
from ..desi.fraction import *
|
|
8
|
+
from ..desi.differentials import *
|
|
9
|
+
from ..intigers.lcg_v3 import *
|
|
10
|
+
from ..intigers.prng_pw_op import *
|
|
11
|
+
from ..seqgen.sb_crypt import *
|
|
12
|
+
from ..seqgen.ssi_netop import *
|
|
13
13
|
|
|
14
14
|
BASE_PRNG = ["lcg","lcgv2","lcgv3","mdr","mdrv2",\
|
|
15
15
|
"mdrgen","iomaps","idforest","optri","rch","qval",\
|
|
@@ -2,7 +2,7 @@ from .pof_autogen import *
|
|
|
2
2
|
from .intfactor import *
|
|
3
3
|
from morebs2.numerical_generator import prg_seqsort_ties,prg_partition_for_sz
|
|
4
4
|
from morebs2.g2tdecomp import TNode
|
|
5
|
-
from intigers.extraneous import prg__single_to_int,signed_modulo
|
|
5
|
+
from ..intigers.extraneous import prg__single_to_int,signed_modulo
|
|
6
6
|
|
|
7
7
|
"""
|
|
8
8
|
`p` is a partition that does not contain 0. Fixes any
|
|
@@ -2,7 +2,7 @@ from morebs2.graph_basics import *
|
|
|
2
2
|
from morebs2.numerical_generator import modulo_in_range,prg__LCG
|
|
3
3
|
from .extraneous import to_trinary_relation
|
|
4
4
|
from .seq_struct import *
|
|
5
|
-
from mini_dm.ag_ext import *
|
|
5
|
+
from ..mini_dm.ag_ext import *
|
|
6
6
|
|
|
7
7
|
def output_LCG_matrix(lcg,shape,range_outputter):
|
|
8
8
|
assert type(shape) == tuple and len(shape) == 2
|
|
@@ -14,12 +14,12 @@ Additionally, modulated vector operations are possible through
|
|
|
14
14
|
class<ModulatedN2MVectorMap>.
|
|
15
15
|
"""
|
|
16
16
|
|
|
17
|
-
from mini_dm.n2m_function import *
|
|
18
|
-
from intigers.poly_output_fitter_ import *
|
|
19
|
-
from intigers.mod_prng import prg__iterable
|
|
20
|
-
from mini_dm.ngram import *
|
|
17
|
+
from ..mini_dm.n2m_function import *
|
|
18
|
+
from ..intigers.poly_output_fitter_ import *
|
|
19
|
+
from ..intigers.mod_prng import prg__iterable
|
|
20
|
+
from ..mini_dm.ngram import *
|
|
21
21
|
from morebs2.numerical_generator import prg__constant
|
|
22
|
-
from intigers.prng_pw_op import *
|
|
22
|
+
from ..intigers.prng_pw_op import *
|
|
23
23
|
|
|
24
24
|
"""
|
|
25
25
|
outputs function input dimension; used specifically
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
#from .intigers import process_seq,extraneous,intfactor,poly_output_fitter_,mod_prng
|
|
@@ -3,10 +3,10 @@ from morebs2.matrix_methods import is_bounds_vector,is_proper_bounds_vector,is_2
|
|
|
3
3
|
from types import MethodType,FunctionType
|
|
4
4
|
from .minmax_freq import *
|
|
5
5
|
from .iseq import *
|
|
6
|
-
from intigers.process_seq import stdop_vec
|
|
7
|
-
from intigers.extraneous import zero_div0,to_trinary_relation_v2
|
|
8
|
-
from intigers.intfactor import *
|
|
9
|
-
from intigers.poly_output_fitter_ import *
|
|
6
|
+
from ..intigers.process_seq import stdop_vec
|
|
7
|
+
from ..intigers.extraneous import zero_div0,to_trinary_relation_v2
|
|
8
|
+
from ..intigers.intfactor import *
|
|
9
|
+
from ..intigers.poly_output_fitter_ import *
|
|
10
10
|
|
|
11
11
|
#------------------------ auxiliary functions used by <APRNGGaugeV2> for
|
|
12
12
|
#------------------------ measures such as matching and summarization
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
from morebs2.matrix_methods import vector_to_string,\
|
|
2
2
|
string_to_vector,euclidean_point_distance,is_vector,is_number
|
|
3
|
-
from intigers.extraneous import trinary_diff,to_trinary_relation_v2,safe_div,\
|
|
3
|
+
from ..intigers.extraneous import trinary_diff,to_trinary_relation_v2,safe_div,\
|
|
4
4
|
trinary_vector_invertible_difference,active_trinary_vector_indices,\
|
|
5
5
|
trinary_vector_intersection,round_to_trinary_vector,round_trinary
|
|
6
6
|
from collections import defaultdict
|
|
@@ -2,7 +2,7 @@ from morebs2.poly_struct import CEPoly
|
|
|
2
2
|
from morebs2.matrix_methods import is_valid_range,vector_to_string,string_to_vector
|
|
3
3
|
from morebs2.numerical_generator import modulo_in_range,prg_choose_n
|
|
4
4
|
from math import floor
|
|
5
|
-
from intigers.extraneous import zero_div0
|
|
5
|
+
from ..intigers.extraneous import zero_div0
|
|
6
6
|
from collections import defaultdict
|
|
7
7
|
from .csrch import *
|
|
8
8
|
from .ngram import assert_nm
|
|
@@ -6,7 +6,7 @@ from morebs2.matrix_methods import is_number,is_vector,\
|
|
|
6
6
|
is_valid_range,equal_iterables
|
|
7
7
|
from morebs2.numerical_generator import modulo_in_range
|
|
8
8
|
from morebs2.measures import zero_div
|
|
9
|
-
from intigers.extraneous import to_trinary_relation_v2,safe_div
|
|
9
|
+
from ..intigers.extraneous import to_trinary_relation_v2,safe_div
|
|
10
10
|
from operator import sub
|
|
11
11
|
|
|
12
12
|
import numpy as np
|
|
@@ -3,9 +3,9 @@ from .vs_fit_op import *
|
|
|
3
3
|
from .puc import *
|
|
4
4
|
from .ag_ext import *
|
|
5
5
|
from .iseq import *
|
|
6
|
-
from intigers.mod_prng import *
|
|
6
|
+
from ..intigers.mod_prng import *
|
|
7
7
|
from morebs2.numerical_generator import prg__constant
|
|
8
|
-
from intigers.extraneous import prg__single_to_trinary_vector
|
|
8
|
+
from ..intigers.extraneous import prg__single_to_trinary_vector
|
|
9
9
|
|
|
10
10
|
DEFAULT_VFO_AFFINEHYP_POINTSIZE_RANGE = [10,26]
|
|
11
11
|
DEFAULT_DX_MULTIPLE_RANGE = [1.0,4]
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
from intigers.mod_prng import *
|
|
2
|
-
from intigers.idt_proc import *
|
|
3
|
-
from intigers.extraneous import *
|
|
1
|
+
from ..intigers.mod_prng import *
|
|
2
|
+
from ..intigers.idt_proc import *
|
|
3
|
+
from ..intigers.extraneous import *
|
|
4
4
|
from morebs2.numerical_generator import prg_seqsort,prg_choose_n
|
|
5
5
|
|
|
6
6
|
DEFAULT_FOREST_NEWSEQ_NUMCENTERS = [2,15]
|
|
@@ -2,8 +2,8 @@
|
|
|
2
2
|
file contains code to extend the <RChainHead> class from the
|
|
3
3
|
library <morebs2>
|
|
4
4
|
"""
|
|
5
|
-
from intigers.poly_output_fitter_ import *
|
|
6
|
-
from intigers.extraneous import *
|
|
5
|
+
from ..intigers.poly_output_fitter_ import *
|
|
6
|
+
from ..intigers.extraneous import *
|
|
7
7
|
from morebs2.relevance_functions import RCInst,RChainHead
|
|
8
8
|
from morebs2.numerical_generator import prg_choose_n
|
|
9
9
|
|
|
@@ -1,10 +1,10 @@
|
|
|
1
|
-
from intigers.mdr_v2 import *
|
|
2
|
-
from intigers.tvec import *
|
|
3
|
-
from intigers.intfactor import *
|
|
4
|
-
from mini_dm.iseq import *
|
|
5
|
-
from mini_dm.nsfr import *
|
|
6
|
-
from intigers.poly_output_fitter_ import *
|
|
7
|
-
from intigers.extraneous import to_trinary_relation,to_trinary_relation_v2,zero_div0
|
|
1
|
+
from ..intigers.mdr_v2 import *
|
|
2
|
+
from ..intigers.tvec import *
|
|
3
|
+
from ..intigers.intfactor import *
|
|
4
|
+
from ..mini_dm.iseq import *
|
|
5
|
+
from ..mini_dm.nsfr import *
|
|
6
|
+
from ..intigers.poly_output_fitter_ import *
|
|
7
|
+
from ..intigers.extraneous import to_trinary_relation,to_trinary_relation_v2,zero_div0
|
|
8
8
|
from morebs2.matrix_methods import cr
|
|
9
9
|
|
|
10
10
|
DEFAULT_SHADOW_FITTERS = {"mdr","mdrv2","tvec","fvec","optri","pofv1","pofv2"}
|
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
from morebs2.search_space_iterator import *
|
|
2
2
|
from morebs2.matrix_methods import is_2dmatrix
|
|
3
3
|
|
|
4
|
-
from intigers.lcg_v3 import *
|
|
5
|
-
from intigers.prng_pw_op import *
|
|
6
|
-
from intigers.extraneous import *
|
|
4
|
+
from ..intigers.lcg_v3 import *
|
|
5
|
+
from ..intigers.prng_pw_op import *
|
|
6
|
+
from ..intigers.extraneous import *
|
|
7
7
|
|
|
8
8
|
SSIBL_STRUCTURES = ["lcg","mdr","mdrv2","optri"]
|
|
9
9
|
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
from .intigers import process_seq,extraneous,intfactor,poly_output_fitter_,mod_prng
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|