seppy 0.1.18__tar.gz → 0.2.0__tar.gz

seppy-0.2.0/.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"

seppy-0.2.0/.github/release.yml

@@ -0,0 +1,10 @@
+# .github/release.yml
+
+changelog:
+  categories:
+    - title: Bugfixes 🛠
+      labels:
+        - bug
+    - title: New Features 🎉
+      labels:
+        - enhancement

seppy-0.2.0/.github/workflows/pytest.yml

@@ -0,0 +1,45 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: pytest
+
+on:
+  push:
+    # branches: [ "main" ]
+  pull_request:
+    # branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install flake8 nbmake pytest pytest-doctestplus pytest-cov
+        # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        pip install .
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        pytest --cov --nbmake .
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v5
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

seppy-0.2.0/.gitignore

@@ -0,0 +1,141 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# file generated by setuptools_scm
+_version.py
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tmp/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+.vscode/settings.json
+
+### MacOS: https://raw.githubusercontent.com/github/gitignore/master/Global/macOS.gitignore
+
+# General
+.DS_Store
+.AppleDouble
+.LSOverride

seppy-0.2.0/.zenodo.json

@@ -0,0 +1,53 @@
+{
+    "description": "A compendium of Python data loaders and analysis tools for in-situ measurements of Solar Energetic Particles (SEP).",
+    "license": "BSD-3-Clause",
+    "title": "SEPpy",
+    "grants": [
+        {
+            "id": "10.13039/501100000780::101004159"
+        }
+    ], 
+    "upload_type": "software",
+    "creators": [
+        {
+            "name": "Gieseler, Jan",
+            "orcid": "0000-0003-1848-7067",
+            "affiliation": "University of Turku"
+        },
+        {
+            "name": "Palmroos, Christian",
+            "orcid": "0000-0002-7778-5454",
+            "affiliation": "University of Turku"
+        },
+        {
+            "name": "Dresing, Nina",
+            "orcid": "0000-0003-3903-4649",
+            "affiliation": "University of Turku"
+        },
+        {
+            "name": "Morosan, Diana",
+            "orcid": "0000-0002-8416-1375",
+            "affiliation": "University of Helsinki"
+        },
+        {
+            "name": "Asvestari, Eleanna",
+            "orcid": "0000-0002-6998-7224",
+            "affiliation": "University of Helsinki"
+        },
+        {
+            "name": "Yli-Laurila, Aleksi",
+            "affiliation": "University of Turku"
+        },
+        {
+            "name": "Price, Daniel J.",
+            "orcid": "0000-0002-8065-2847",
+            "affiliation": "University of Helsinki"
+        },
+        {
+            "name": "Vainio, Rami",
+            "orcid": "0000-0002-3298-2067",
+            "affiliation": "University of Turku"
+        }
+    ],
+    "access_right": "open"
+}

seppy-0.2.0/MANIFEST.in

@@ -0,0 +1,11 @@
+# Exclude specific files
+# All files which are tracked by git and not explicitly excluded here are included by setuptools_scm
+# Prune folders
+prune build
+prune docs/_build
+prune docs/api
+global-exclude *.pyc *.o
+
+# This subpackage is only used in development checkouts
+# and should not be included in built tarballs
+prune seppy/_dev

{seppy-0.1.18/seppy.egg-info → seppy-0.2.0}/PKG-INFO

@@ -1,28 +1,28 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: seppy
-Version: 0.1.18
+Version: 0.2.0
 Summary: SEPpy
-Home-page: https://github.com/serpentine-h2020/SEPpy
-Author: Jan Gieseler
-Author-email: jan.gieseler@utu.fi
-License: BSD 3-clause
+Author-email: Jan Gieseler <jan.gieseler@utu.fi>
+License-Expression: BSD-3-Clause
+Project-URL: repository, https://github.com/serpentine-h2020/SEPpy
 Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: BSD License
 Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Topic :: Scientific/Engineering :: Physics
-Requires-Python: >=3.8
-License-File: licenses/LICENSE.rst
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE.rst
 Requires-Dist: astropy
 Requires-Dist: astroquery
 Requires-Dist: bs4
 Requires-Dist: cdflib
+Requires-Dist: ipympl
 Requires-Dist: ipywidgets
 Requires-Dist: matplotlib
 Requires-Dist: mpl-animators>=1.0.0
@@ -32,7 +32,6 @@ Requires-Dist: pooch
 Requires-Dist: requests
 Requires-Dist: solo-epd-loader
 Requires-Dist: sunpy>=4.1.0
-Provides-Extra: all
 Provides-Extra: test
 Requires-Dist: pytest; extra == "test"
 Requires-Dist: pytest-doctestplus; extra == "test"
@@ -40,11 +39,12 @@ Requires-Dist: pytest-cov; extra == "test"
 Provides-Extra: docs
 Requires-Dist: sphinx; extra == "docs"
 Requires-Dist: sphinx-automodapi; extra == "docs"
+Dynamic: license-file
 
 seppy
 =====
 
-|pypi Version| |python version| |pytest| |codecov| |zenodo doi|
+|pypi Version| |python version| |pytest| |codecov| |repostatus| |zenodo doi|
 
 .. |pypi Version| image:: https://img.shields.io/pypi/v/seppy?style=flat&logo=pypi
    :target: https://pypi.org/project/seppy/
@@ -54,6 +54,9 @@ seppy
 .. |pytest| image:: https://github.com/serpentine-h2020/SEPpy/actions/workflows/pytest.yml/badge.svg?branch=main
 .. |codecov| image:: https://codecov.io/gh/serpentine-h2020/SEPpy/branch/main/graph/badge.svg?token=FYELM4Y7DF 
    :target: https://codecov.io/gh/serpentine-h2020/SEPpy
+.. |repostatus| image:: https://www.repostatus.org/badges/latest/active.svg
+   :alt: Project Status: Active – The project has reached a stable, usable state and is being actively developed.
+   :target: https://www.repostatus.org/#active
 
 *This package is in development status! Intended for internal use only, as the syntax is in a floating state and the documentation is incomplete.*
 
@@ -77,7 +80,7 @@ This software is provided "as is", with no guarantee. It is no official data sou
 Installation
 ------------
 
-seppy requires python >= 3.8.
+seppy requires python >= 3.9.
 
 It can be installed from `PyPI <https://pypi.org/project/seppy/>`_ using:
 

{seppy-0.1.18 → seppy-0.2.0}/README.rst

@@ -1,7 +1,7 @@
 seppy
 =====
 
-|pypi Version| |python version| |pytest| |codecov| |zenodo doi|
+|pypi Version| |python version| |pytest| |codecov| |repostatus| |zenodo doi|
 
 .. |pypi Version| image:: https://img.shields.io/pypi/v/seppy?style=flat&logo=pypi
    :target: https://pypi.org/project/seppy/
@@ -11,6 +11,9 @@ seppy
 .. |pytest| image:: https://github.com/serpentine-h2020/SEPpy/actions/workflows/pytest.yml/badge.svg?branch=main
 .. |codecov| image:: https://codecov.io/gh/serpentine-h2020/SEPpy/branch/main/graph/badge.svg?token=FYELM4Y7DF 
    :target: https://codecov.io/gh/serpentine-h2020/SEPpy
+.. |repostatus| image:: https://www.repostatus.org/badges/latest/active.svg
+   :alt: Project Status: Active – The project has reached a stable, usable state and is being actively developed.
+   :target: https://www.repostatus.org/#active
 
 *This package is in development status! Intended for internal use only, as the syntax is in a floating state and the documentation is incomplete.*
 
@@ -34,7 +37,7 @@ This software is provided "as is", with no guarantee. It is no official data sou
 Installation
 ------------
 
-seppy requires python >= 3.8.
+seppy requires python >= 3.9.
 
 It can be installed from `PyPI <https://pypi.org/project/seppy/>`_ using:
 

{seppy-0.1.18 → seppy-0.2.0}/docs/conf.py

@@ -1,68 +1,82 @@
-# -*- coding: utf-8 -*-
-#
 # Configuration file for the Sphinx documentation builder.
 #
 # This file does only contain a selection of the most common options. For a
 # full list see the documentation:
 # http://www.sphinx-doc.org/en/master/config
 
+import datetime
 
 # -- Project information -----------------------------------------------------
 
-project = 'SEPpy'
-copyright = '2022, Jan Gieseler'
-author = 'Jan Gieseler'
-
 # The full version, including alpha/beta/rc tags
 from seppy import __version__
+
 release = __version__
 
+project = "SEPpy"
+author = "Jan Gieseler"
+copyright = f"{datetime.datetime.now().year}, {author}"  # noqa: A001
+
 # -- General configuration ---------------------------------------------------
 
 # Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# extensions coming with Sphinx (named "sphinx.ext.*") or your custom
 # ones.
 extensions = [
-    'sphinx.ext.autodoc',
-    'sphinx.ext.intersphinx',
-    'sphinx.ext.todo',
-    'sphinx.ext.coverage',
-    'sphinx.ext.inheritance_diagram',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.napoleon',
-    'sphinx.ext.doctest',
-    'sphinx.ext.mathjax',
-    'sphinx_automodapi.automodapi',
-    'sphinx_automodapi.smart_resolver',
+    "sphinx.ext.autodoc",
+    "sphinx.ext.intersphinx",
+    "sphinx.ext.todo",
+    "sphinx.ext.coverage",
+    "sphinx.ext.inheritance_diagram",
+    "sphinx.ext.viewcode",
+    "sphinx.ext.napoleon",
+    "sphinx.ext.doctest",
+    "sphinx.ext.mathjax",
+    "sphinx_automodapi.automodapi",
+    "sphinx_automodapi.smart_resolver",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
-# templates_path = ['_templates']
+# templates_path = ["_templates"]
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
-source_suffix = '.rst'
+source_suffix = ".rst"
 
 # The master toctree document.
-master_doc = 'index'
+master_doc = "index"
+
+# Treat everything in single ` as a Python reference.
+default_role = 'py:obj'
 
 # -- Options for intersphinx extension ---------------------------------------
 
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {'https://docs.python.org/': None}
+intersphinx_mapping = {"python": ("https://docs.python.org/", None)}
 
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
-html_theme = 'alabaster'
+html_theme = "alabaster"
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-# html_static_path = ['_static']
+# html_static_path = ["_static"]
+
+# By default, when rendering docstrings for classes, sphinx.ext.autodoc will
+# make docs with the class-level docstring and the class-method docstrings,
+# but not the __init__ docstring, which often contains the parameters to
+# class constructors across the scientific Python ecosystem. The option below
+# will append the __init__ docstring to the class-level docstring when rendering
+# the docs. For more options, see:
+# https://www.sphinx-doc.org/en/master/usage/extensions/autodoc.html#confval-autoclass_content
+autoclass_content = "both"
+
+# -- Other options ----------------------------------------------------------

seppy-0.2.0/docs/index.rst

@@ -0,0 +1,15 @@
+SEPpy Documentation
+-------------------
+
+This is the documentation for seppy.
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`

{seppy-0.1.18 → seppy-0.2.0}/docs/make.bat

@@ -1,35 +1,35 @@
-@ECHO OFF
-
-pushd %~dp0
-
-REM Command file for Sphinx documentation
-
-if "%SPHINXBUILD%" == "" (
-	set SPHINXBUILD=sphinx-build
-)
-set SOURCEDIR=.
-set BUILDDIR=_build
-
-if "%1" == "" goto help
-
-%SPHINXBUILD% >NUL 2>NUL
-if errorlevel 9009 (
-	echo.
-	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
-	echo.installed, then set the SPHINXBUILD environment variable to point
-	echo.to the full path of the 'sphinx-build' executable. Alternatively you
-	echo.may add the Sphinx directory to PATH.
-	echo.
-	echo.If you don't have Sphinx installed, grab it from
-	echo.http://sphinx-doc.org/
-	exit /b 1
-)
-
-%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-goto end
-
-:help
-%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-
-:end
-popd
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.http://sphinx-doc.org/
+	exit /b 1
+)
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd