seamless-suite 0.1.0__tar.gz

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+ The MIT License (MIT)
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+
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+ Author: Sjoerd de Vries
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+ Copyright (c) 2016-2022 INSERM, 2022-2026 CNRS.
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+ Contributions are copyrighted by their respective authors.
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
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+ Metadata-Version: 2.4
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+ Name: seamless-suite
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+ Version: 0.1.0
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+ Summary: Seamless umbrella distribution (all components by default)
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+ Author: Sjoerd de Vries
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+ License-Expression: MIT
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+ Project-URL: Homepage, https://github.com/sjdv1982/seamless
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+ Project-URL: Repository, https://github.com/sjdv1982/seamless
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+ Project-URL: Issues, https://github.com/sjdv1982/seamless/issues
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+ Keywords: seamless,suite,workflow,reproducibility
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+ Classifier: Development Status :: 3 - Alpha
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Topic :: Scientific/Engineering
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+ Classifier: Topic :: Software Development :: Libraries
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE.txt
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+ Requires-Dist: seamless-core
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+ Requires-Dist: seamless-config
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+ Requires-Dist: seamless-remote
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+ Requires-Dist: seamless-transformer
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+ Requires-Dist: seamless-dask
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+ Requires-Dist: seamless-jobserver
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+ Requires-Dist: seamless-database
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+ Requires-Dist: remote-http-launcher
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+ Dynamic: license-file
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+
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+ # Seamless
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+
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+ **Seamless: define your computation once — cache it, scale it, share it.**
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+
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+ Most computational pipelines are already reproducible — the same inputs produce the same outputs. Wrap your code as a step with declared inputs and outputs, and Seamless gives you caching (never recompute what you've already computed) and remote deployment (run on a cluster without changing your code). Remote execution also acts as a reproducibility test: if your wrapped code runs on a clean worker and produces the same result, it is reproducible. If not, Seamless has helped you find the problem — whether it's a missing input, an undeclared dependency, or a sensitivity to platform or library versions.
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+
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+ Seamless wraps both Python and command-line code. In Python, `direct` runs a function immediately; `delayed` records the function for deferred or remote execution. From the shell, `seamless-run` wraps any command as a Seamless transformation — no Python required. In both cases, the transformation is identified by the checksum of its code and inputs: identical work always produces the same identity.
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+
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+ Sharing works at two levels. The lightweight path is to exchange checksums: if two researchers have computed the same transformation, they already have the same result — no data transfer needed. The concrete path is to share the `seamless.db` file, a portable SQLite database that maps transformation checksums to result checksums. Copy it to a colleague, a cluster, or a publication archive, and every cached result travels with it. Combined, these two paths let a lab build up a shared computation cache that grows over time and never recomputes what anyone has already computed.
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+
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+ ## What about interactivity?
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+
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+ This is Seamless 1.x, running on a new code architecture. Seamless 0.x offered an interactive, notebook-first workflow experience with reactive cells, Jupyter widget integration, filesystem mounting, and collaborative web interfaces. These
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+ features are being ported to the new architecture. If your work is primarily
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+ interactive/exploratory, you can use the [legacy version](https://sjdv1982.github.io/seamless/legacy/)
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+ today, or watch this space for updates.
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+
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+ ## Installation
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+
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+ ```bash
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+ pip install seamless-suite
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+ ```
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+
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+ This installs all standard Seamless components. For a minimal install, the core user-facing packages are:
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+
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+ | Package | Import | Provides |
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+ | --- | --- | --- |
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+ | `seamless-core` | `import seamless` | `Checksum`, `Buffer`, cell types, buffer cache |
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+ | `seamless-transformer` | `from seamless.transformer import direct, delayed` | `direct`, `delayed`, `seamless-run`, `seamless-upload`, `seamless-download` |
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+ | `seamless-config` | `import seamless.config` | `seamless.config.init()`, `seamless-init` |
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+
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+ ## Documentation
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+
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+ Full documentation — including getting-started guides, cluster setup, remote execution, and reference API — is at:
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+
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+ **<https://sjdv1982.github.io/seamless/>**
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+ # Seamless
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+
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+ **Seamless: define your computation once — cache it, scale it, share it.**
4
+
5
+ Most computational pipelines are already reproducible — the same inputs produce the same outputs. Wrap your code as a step with declared inputs and outputs, and Seamless gives you caching (never recompute what you've already computed) and remote deployment (run on a cluster without changing your code). Remote execution also acts as a reproducibility test: if your wrapped code runs on a clean worker and produces the same result, it is reproducible. If not, Seamless has helped you find the problem — whether it's a missing input, an undeclared dependency, or a sensitivity to platform or library versions.
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+
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+ Seamless wraps both Python and command-line code. In Python, `direct` runs a function immediately; `delayed` records the function for deferred or remote execution. From the shell, `seamless-run` wraps any command as a Seamless transformation — no Python required. In both cases, the transformation is identified by the checksum of its code and inputs: identical work always produces the same identity.
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+
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+ Sharing works at two levels. The lightweight path is to exchange checksums: if two researchers have computed the same transformation, they already have the same result — no data transfer needed. The concrete path is to share the `seamless.db` file, a portable SQLite database that maps transformation checksums to result checksums. Copy it to a colleague, a cluster, or a publication archive, and every cached result travels with it. Combined, these two paths let a lab build up a shared computation cache that grows over time and never recomputes what anyone has already computed.
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+
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+ ## What about interactivity?
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+
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+ This is Seamless 1.x, running on a new code architecture. Seamless 0.x offered an interactive, notebook-first workflow experience with reactive cells, Jupyter widget integration, filesystem mounting, and collaborative web interfaces. These
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+ features are being ported to the new architecture. If your work is primarily
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+ interactive/exploratory, you can use the [legacy version](https://sjdv1982.github.io/seamless/legacy/)
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+ today, or watch this space for updates.
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+
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+ ## Installation
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+
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+ ```bash
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+ pip install seamless-suite
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+ ```
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+
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+ This installs all standard Seamless components. For a minimal install, the core user-facing packages are:
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+
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+ | Package | Import | Provides |
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+ | --- | --- | --- |
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+ | `seamless-core` | `import seamless` | `Checksum`, `Buffer`, cell types, buffer cache |
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+ | `seamless-transformer` | `from seamless.transformer import direct, delayed` | `direct`, `delayed`, `seamless-run`, `seamless-upload`, `seamless-download` |
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+ | `seamless-config` | `import seamless.config` | `seamless.config.init()`, `seamless-init` |
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+
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+ ## Documentation
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+
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+ Full documentation — including getting-started guides, cluster setup, remote execution, and reference API — is at:
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+
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+ **<https://sjdv1982.github.io/seamless/>**
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+ [build-system]
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+ requires = ["setuptools>=69", "wheel"]
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+ build-backend = "setuptools.build_meta"
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+
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+ [project]
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+ name = "seamless-suite"
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+ version = "0.1.0"
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+ description = "Seamless umbrella distribution (all components by default)"
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+ readme = "README.md"
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+ requires-python = ">=3.10"
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+ license = "MIT"
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+ license-files = ["LICENSE.txt"]
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+ authors = [{name = "Sjoerd de Vries"}]
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+ dependencies = [
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+ "seamless-core",
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+ "seamless-config",
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+ "seamless-remote",
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+ "seamless-transformer",
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+ "seamless-dask",
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+ "seamless-jobserver",
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+ "seamless-database",
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+ "remote-http-launcher",
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+ ]
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+ keywords = ["seamless", "suite", "workflow", "reproducibility"]
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+ classifiers = [
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+ "Development Status :: 3 - Alpha",
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+ "Intended Audience :: Science/Research",
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+ "Intended Audience :: Developers",
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+ "Programming Language :: Python :: 3",
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+ "Programming Language :: Python :: 3 :: Only",
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+ "Operating System :: OS Independent",
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+ "Topic :: Scientific/Engineering",
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+ "Topic :: Software Development :: Libraries",
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+ ]
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+
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+ [project.urls]
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+ Homepage = "https://github.com/sjdv1982/seamless"
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+ Repository = "https://github.com/sjdv1982/seamless"
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+ Issues = "https://github.com/sjdv1982/seamless/issues"
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+
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+ [tool.setuptools]
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+ packages = []
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+ Metadata-Version: 2.4
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+ Name: seamless-suite
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+ Version: 0.1.0
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+ Summary: Seamless umbrella distribution (all components by default)
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+ Author: Sjoerd de Vries
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+ License-Expression: MIT
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+ Project-URL: Homepage, https://github.com/sjdv1982/seamless
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+ Project-URL: Repository, https://github.com/sjdv1982/seamless
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+ Project-URL: Issues, https://github.com/sjdv1982/seamless/issues
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+ Keywords: seamless,suite,workflow,reproducibility
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+ Classifier: Development Status :: 3 - Alpha
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Topic :: Scientific/Engineering
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+ Classifier: Topic :: Software Development :: Libraries
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE.txt
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+ Requires-Dist: seamless-core
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+ Requires-Dist: seamless-config
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+ Requires-Dist: seamless-remote
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+ Requires-Dist: seamless-transformer
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+ Requires-Dist: seamless-dask
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+ Requires-Dist: seamless-jobserver
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+ Requires-Dist: seamless-database
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+ Requires-Dist: remote-http-launcher
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+ Dynamic: license-file
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+
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+ # Seamless
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+
34
+ **Seamless: define your computation once — cache it, scale it, share it.**
35
+
36
+ Most computational pipelines are already reproducible — the same inputs produce the same outputs. Wrap your code as a step with declared inputs and outputs, and Seamless gives you caching (never recompute what you've already computed) and remote deployment (run on a cluster without changing your code). Remote execution also acts as a reproducibility test: if your wrapped code runs on a clean worker and produces the same result, it is reproducible. If not, Seamless has helped you find the problem — whether it's a missing input, an undeclared dependency, or a sensitivity to platform or library versions.
37
+
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+ Seamless wraps both Python and command-line code. In Python, `direct` runs a function immediately; `delayed` records the function for deferred or remote execution. From the shell, `seamless-run` wraps any command as a Seamless transformation — no Python required. In both cases, the transformation is identified by the checksum of its code and inputs: identical work always produces the same identity.
39
+
40
+ Sharing works at two levels. The lightweight path is to exchange checksums: if two researchers have computed the same transformation, they already have the same result — no data transfer needed. The concrete path is to share the `seamless.db` file, a portable SQLite database that maps transformation checksums to result checksums. Copy it to a colleague, a cluster, or a publication archive, and every cached result travels with it. Combined, these two paths let a lab build up a shared computation cache that grows over time and never recomputes what anyone has already computed.
41
+
42
+ ## What about interactivity?
43
+
44
+ This is Seamless 1.x, running on a new code architecture. Seamless 0.x offered an interactive, notebook-first workflow experience with reactive cells, Jupyter widget integration, filesystem mounting, and collaborative web interfaces. These
45
+ features are being ported to the new architecture. If your work is primarily
46
+ interactive/exploratory, you can use the [legacy version](https://sjdv1982.github.io/seamless/legacy/)
47
+ today, or watch this space for updates.
48
+
49
+ ## Installation
50
+
51
+ ```bash
52
+ pip install seamless-suite
53
+ ```
54
+
55
+ This installs all standard Seamless components. For a minimal install, the core user-facing packages are:
56
+
57
+ | Package | Import | Provides |
58
+ | --- | --- | --- |
59
+ | `seamless-core` | `import seamless` | `Checksum`, `Buffer`, cell types, buffer cache |
60
+ | `seamless-transformer` | `from seamless.transformer import direct, delayed` | `direct`, `delayed`, `seamless-run`, `seamless-upload`, `seamless-download` |
61
+ | `seamless-config` | `import seamless.config` | `seamless.config.init()`, `seamless-init` |
62
+
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+ ## Documentation
64
+
65
+ Full documentation — including getting-started guides, cluster setup, remote execution, and reference API — is at:
66
+
67
+ **<https://sjdv1982.github.io/seamless/>**
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+ LICENSE.txt
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+ README.md
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+ pyproject.toml
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+ seamless_suite.egg-info/PKG-INFO
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+ seamless_suite.egg-info/SOURCES.txt
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+ seamless_suite.egg-info/dependency_links.txt
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+ seamless_suite.egg-info/requires.txt
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+ seamless_suite.egg-info/top_level.txt
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+ seamless-core
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+ seamless-config
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+ seamless-remote
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+ seamless-transformer
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+ seamless-dask
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+ seamless-jobserver
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+ seamless-database
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+ remote-http-launcher
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+ [egg_info]
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+ tag_build =
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+ tag_date = 0
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+