sclab 0.2.4__tar.gz → 0.2.5__tar.gz

{sclab-0.2.4 → sclab-0.2.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sclab
-Version: 0.2.4
+Version: 0.2.5
 Summary: sclab
 Author-email: Argenis Arriojas <ArriojasMaldonado001@umb.edu>
 Requires-Python: >=3.10,<3.13
@@ -15,6 +15,7 @@ Requires-Dist: anndata
 Requires-Dist: anywidget
 Requires-Dist: ipywidgets
 Requires-Dist: itables
+Requires-Dist: matplotlib
 Requires-Dist: numpy<2.2
 Requires-Dist: pandas
 Requires-Dist: plotly<6.0

{sclab-0.2.4 → sclab-0.2.5}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "sclab"
-version = "0.2.4"
+version = "0.2.5"
 description = "sclab"
 readme = "README.md"
 authors = [
@@ -19,6 +19,7 @@ dependencies = [
     "anywidget",
     "ipywidgets",
     "itables",
+    "matplotlib",
     "numpy<2.2",
     "pandas",
     "plotly<6.0",
@@ -61,7 +62,7 @@ dev = [
     "mkdocs>=1.6.1",
     "mkdocs-material>=9.6.3",
     "mkdocs-jupyter>=0.25.1",
-    "scanpy[leiden]>=1.10.4",
+    "scanpy[harmony,leiden,scrublet,skmisc]>=1.10.4",
     "jupyterlab>=4.3.6",
     "sclab-tools",
 ]

{sclab-0.2.4 → sclab-0.2.5}/src/sclab/__init__.py

@@ -6,4 +6,4 @@ __all__ = [
     "SCLabDashboard",
 ]
 
-__version__ = "0.2.4"
+__version__ = "0.2.5"

{sclab-0.2.4 → sclab-0.2.5}/src/sclab/_sclab.py

@@ -1,6 +1,7 @@
 import inspect
 from io import BytesIO
 from pathlib import Path
+import tempfile
 
 from anndata import AnnData
 from IPython.display import display
@@ -256,14 +257,20 @@ class DataLoader(VBox):
 
         match path.suffix:
             case ".h5":
-                adata = read_10x_h5(contents)
+                with tempfile.NamedTemporaryFile(suffix=".h5") as tmp:
+                    tmp.write(contents.getbuffer())
+                    tmp.flush()
+                    adata = read_10x_h5(tmp.name)
             case ".h5ad":
-                adata = read_h5ad(contents)
+                with tempfile.NamedTemporaryFile(suffix=".h5ad") as tmp:
+                    tmp.write(contents.getbuffer())
+                    tmp.flush()
+                    adata = read_h5ad(tmp.name)
             case _:
                 self.upload_info.clear_output()
                 with self.upload_info:
                     print(f"`{filename}` is not valid")
-                    print("Please upload a 10x h5 or h5ad file")
+                    print("Please upload a 10x .h5 or .h5ad file")
                 return
 
         if var_names in adata.var: