PyPI - sciv - Versions diffs - 0.0.79__tar.gz → 0.0.81__tar.gz - Mend

sciv 0.0.79tar.gz → 0.0.81tar.gz

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Files changed (44) hide show

{sciv-0.0.79 → sciv-0.0.81}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sciv
-Version: 0.0.79
+Version: 0.0.81
 Summary: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution
 Project-URL: github, https://github.com/YuZhengM/sciv
 Author-email: Zheng-Min Yu <yuzmbio@163.com>

{sciv-0.0.79 → sciv-0.0.81}/pyproject.toml RENAMED Viewed

@@ -3,7 +3,7 @@ requires = ["hatchling"]
 build-backend = "hatchling.build"
 [project]
 name = "sciv"
-version = "0.0.79"
+version = "0.0.81"
 authors = [
     { name = "Zheng-Min Yu", email = "yuzmbio@163.com" },
 ]

{sciv-0.0.79 → sciv-0.0.81}/src/sciv/tool/_algorithm_.py RENAMED Viewed

@@ -1024,9 +1024,12 @@ def calculate_fragment_weighted_accessibility(input_data: dict, block_size: int
     ul.log(__name__).info("Calculate expected counts matrix ===> (numerator)")
     global_scale_data = vector_multiply_block_storage(row_sum, col_sum, block_size=block_size)
+    if block_size <= 0:
+        global_scale_data = global_scale_data.astype(np.float32)
     del row_sum, col_sum
-    global_scale_data /= all_sum
+    global_scale_data /= all_sum * 1.0
     del all_sum
@@ -1034,7 +1037,7 @@ def calculate_fragment_weighted_accessibility(input_data: dict, block_size: int
     overlap_matrix = to_dense(overlap_matrix)
     global_scale_data = global_scale_data.dot(overlap_matrix)
-    global_scale_data[global_scale_data != 0] = global_scale_data[global_scale_data != 0].min() / 2
+    global_scale_data[global_scale_data == 0] = global_scale_data[global_scale_data != 0].min() / 2
     ul.log(__name__).info("Calculate fragment weighted accessibility.")
     init_score = to_dense(init_score)
@@ -1128,9 +1131,12 @@ def calculate_init_score_weight(
     ul.log(__name__).info("Calculate expected counts matrix ===> (numerator)")
     global_scale_data = vector_multiply_block_storage(row_sum, col_sum, block_size=block_size)
+    if block_size <= 0:
+        global_scale_data = global_scale_data.astype(np.float32)
     del row_sum, col_sum
-    global_scale_data /= all_sum
+    global_scale_data /= all_sum * 1.0
     del all_sum
@@ -1139,7 +1145,7 @@ def calculate_init_score_weight(
     global_scale_data = global_scale_data.dot(overlap_matrix)
     del overlap_matrix
-    global_scale_data[global_scale_data != 0] = global_scale_data[global_scale_data != 0].min() / 2
+    global_scale_data[global_scale_data == 0] = global_scale_data[global_scale_data != 0].min() / 2
     ul.log(__name__).info("Calculate fragment weighted accessibility.")
     _init_trs_ncw_ = to_dense(_init_trs_ncw_)