scipion-pyworkflow 3.9.0__tar.gz → 3.9.2__tar.gz

{scipion_pyworkflow-3.9.0 → scipion_pyworkflow-3.9.2}/CHANGES.txt

@@ -1,3 +1,5 @@
+V3.9.2 - hotfix: rescue commented methods: Protocol._insertRunJobStep and Protocol._insertCopyFileStep
+V3.9.1 - hotfix: loading related objects (CTF - Mics in particle extraction)
 V3.9.0
   - Project can have a comment (tooltip over the project name and click will edit it). Will be populated with templates description.
   - Project Color modes:

{scipion_pyworkflow-3.9.0/scipion_pyworkflow.egg-info → scipion_pyworkflow-3.9.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipion-pyworkflow
-Version: 3.9.0
+Version: 3.9.2
 Summary: Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
 Home-page: https://github.com/scipion-em/scipion-pyworkflow
 Author: J.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna

{scipion_pyworkflow-3.9.0 → scipion_pyworkflow-3.9.2}/pyworkflow/constants.py

@@ -43,7 +43,7 @@ VERSION_1 = '1.0.0'
 VERSION_1_1 = '1.1.0'
 VERSION_1_2 = '1.2.0'
 VERSION_2_0 = '2.0.0'
-VERSION_3_0 = '3.9.0'
+VERSION_3_0 = '3.9.2'
 
 # For a new release, define a new constant and assign it to LAST_VERSION
 # The existing one has to be added to OLD_VERSIONS list.

{scipion_pyworkflow-3.9.0 → scipion_pyworkflow-3.9.2}/pyworkflow/project/project.py

@@ -1934,7 +1934,7 @@ class Project(object):
 
         if n is not None:
             # Iterate recursively all descendants
-            for node in n.iterChilds():
+            for node in n.iterChildren():
                 connection[node.pointer.getUniqueId()] = True
                 # Add also 
                 connection[node.pointer.get().strId()] = True

{scipion_pyworkflow-3.9.0 → scipion_pyworkflow-3.9.2}/pyworkflow/protocol/protocol.py

@@ -1139,20 +1139,17 @@ class Protocol(Step):
 
         return self.__insertStep(step,prerequisites)
 
-    # def _insertRunJobStep(self, progName, progArguments, resultFiles=[],
-    #                       **kwargs):
-    #     """ Insert an Step that will simple call runJob function
-    #     **args: see __insertStep
-    #     """
-    #     return self._insertFunctionStep('runJob', progName, progArguments,
-    #                                     **kwargs)
-    #
-    # def _insertCopyFileStep(self, sourceFile, targetFile, **kwargs):
-    #     """ Shortcut function to insert a step for copying a file to a destiny. """
-    #     step = FunctionStep(pwutils.copyFile, 'copyFile', sourceFile,
-    #                         targetFile,
-    #                         **kwargs)
-    #     return self.__insertStep(step, **kwargs)
+    def _insertRunJobStep(self, progName, progArguments, resultFiles=[],
+                          **kwargs):
+        """ Insert a Step that will simply call runJob function
+        **args: see __insertStep
+        """
+        return self._insertFunctionStep('runJob', progName, progArguments, **kwargs)
+
+    def _insertCopyFileStep(self, sourceFile, targetFile, **kwargs):
+        """ Shortcut function to insert a step for copying a file to a destiny. """
+        step = FunctionStep(pwutils.copyFile, 'copyFile', sourceFile, targetFile, **kwargs)
+        return self.__insertStep(step, **kwargs)
 
     def _enterDir(self, path):
         """ Enter into a new directory path and store the current path.

{scipion_pyworkflow-3.9.0 → scipion_pyworkflow-3.9.2/scipion_pyworkflow.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipion-pyworkflow
-Version: 3.9.0
+Version: 3.9.2
 Summary: Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
 Home-page: https://github.com/scipion-em/scipion-pyworkflow
 Author: J.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna