scipion-em-xmipp 25.6.0__tar.gz → 25.6.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (263) hide show
  1. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/CHANGELOG.md +3 -0
  2. {scipion_em_xmipp-25.6.0/scipion_em_xmipp.egg-info → scipion_em_xmipp-25.6.1}/PKG-INFO +1 -1
  3. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1/scipion_em_xmipp.egg-info}/PKG-INFO +1 -1
  4. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/__init__.py +1 -1
  5. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/version.py +1 -1
  6. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/LICENSE +0 -0
  7. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/MANIFEST.in +0 -0
  8. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/README.md +0 -0
  9. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/pyproject.toml +0 -0
  10. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/requirements.txt +0 -0
  11. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/scipion_em_xmipp.egg-info/SOURCES.txt +0 -0
  12. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/scipion_em_xmipp.egg-info/dependency_links.txt +0 -0
  13. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/scipion_em_xmipp.egg-info/entry_points.txt +0 -0
  14. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/scipion_em_xmipp.egg-info/requires.txt +0 -0
  15. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/scipion_em_xmipp.egg-info/top_level.txt +0 -0
  16. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/setup.cfg +0 -0
  17. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/base.py +0 -0
  18. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/bibtex.py +0 -0
  19. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/checkProtocolsConf.py +0 -0
  20. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/constants.py +0 -0
  21. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/convert/__init__.py +0 -0
  22. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/convert/convert.py +0 -0
  23. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/convert/dataimport.py +0 -0
  24. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/convert/io_coordinates.py +0 -0
  25. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py +0 -0
  26. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py +0 -0
  27. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py +0 -0
  28. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py +0 -0
  29. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py +0 -0
  30. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py +0 -0
  31. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_deep_align.py +0 -0
  32. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_deep_denoising.py +0 -0
  33. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_enrich.py +0 -0
  34. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_kmeans_clustering.py +0 -0
  35. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py +0 -0
  36. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py +0 -0
  37. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py +0 -0
  38. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py +0 -0
  39. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_mltomo.py +0 -0
  40. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_movie_average.py +0 -0
  41. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_movie_opticalflow.py +0 -0
  42. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_particle_boxsize.py +0 -0
  43. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py +0 -0
  44. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_rotational_spectra.py +0 -0
  45. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_screen_deeplearning.py +0 -0
  46. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_solid_angles.py +0 -0
  47. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_split_volume.py +0 -0
  48. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py +0 -0
  49. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/protocols/protocol_subtract_projection.py +0 -0
  50. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocol_deep_denoising.py +0 -0
  51. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py +0 -0
  52. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py +0 -0
  53. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py +0 -0
  54. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py +0 -0
  55. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py +0 -0
  56. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py +0 -0
  57. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_mixed_movies.py +0 -0
  58. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_solid_angles.py +0 -0
  59. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_subtract_projection.py +0 -0
  60. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/tests/test_protocols_xmipp_movies.py +0 -0
  61. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py +0 -0
  62. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_deep_align.py +0 -0
  63. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py +0 -0
  64. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_mltomo.py +0 -0
  65. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_solid_angles.py +0 -0
  66. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/legacy/viewers/viewer_split_volume.py +0 -0
  67. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/programs.py +0 -0
  68. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/__init__.py +0 -0
  69. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_align_volume.py +0 -0
  70. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_align_volume_and_particles.py +0 -0
  71. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_analyze_local_ctf.py +0 -0
  72. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_angular_graph_consistency.py +0 -0
  73. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_apply_alignment.py +0 -0
  74. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_apply_tilt_to_ctf.py +0 -0
  75. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_apply_transformation_matrix.py +0 -0
  76. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_apply_zernike3d.py +0 -0
  77. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_assignment_tilt_pair.py +0 -0
  78. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_break_symmetry.py +0 -0
  79. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_center_particles.py +0 -0
  80. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_cl2d.py +0 -0
  81. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_cl2d_align.py +0 -0
  82. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_cl2d_clustering.py +0 -0
  83. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_classes_2d_mapping.py +0 -0
  84. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_classify_pca.py +0 -0
  85. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_classify_pca_streaming.py +0 -0
  86. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_compare_angles.py +0 -0
  87. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_compare_reprojections.py +0 -0
  88. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_compute_likelihood.py +0 -0
  89. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_consensus_classes.py +0 -0
  90. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_consensus_local_ctf.py +0 -0
  91. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_convert_pdb.py +0 -0
  92. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_core_analysis.py +0 -0
  93. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_create_gallery.py +0 -0
  94. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ctf_consensus.py +0 -0
  95. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ctf_correct_wiener2d.py +0 -0
  96. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ctf_defocus_group.py +0 -0
  97. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ctf_micrographs.py +0 -0
  98. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_deep_center.py +0 -0
  99. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_deep_center_predict.py +0 -0
  100. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_deep_hand.py +0 -0
  101. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_deep_micrograph_screen.py +0 -0
  102. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_denoise_particles.py +0 -0
  103. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_eliminate_empty_images.py +0 -0
  104. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_extract_asymmetric_unit.py +0 -0
  105. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_extract_particles.py +0 -0
  106. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_extract_particles_movies.py +0 -0
  107. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_extract_particles_pairs.py +0 -0
  108. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_flexalign.py +0 -0
  109. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_generate_reprojections.py +0 -0
  110. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_helical_parameters.py +0 -0
  111. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_kerdensom.py +0 -0
  112. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_local_ctf.py +0 -0
  113. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_mics_defocus_balancer.py +0 -0
  114. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ml2d.py +0 -0
  115. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_movie_alignment_consensus.py +0 -0
  116. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_movie_dose_analysis.py +0 -0
  117. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_movie_gain.py +0 -0
  118. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_movie_max_shift.py +0 -0
  119. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_movie_split_frames.py +0 -0
  120. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_multiple_fscs.py +0 -0
  121. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_multireference_alignability.py +0 -0
  122. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_normalize_strain.py +0 -0
  123. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_particle_pick.py +0 -0
  124. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_particle_pick_automatic.py +0 -0
  125. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_particle_pick_consensus.py +0 -0
  126. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_particle_pick_pairs.py +0 -0
  127. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py +0 -0
  128. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_phantom_create.py +0 -0
  129. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_pick_noise.py +0 -0
  130. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py +0 -0
  131. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/__init__.py +0 -0
  132. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/geometrical_mask.py +0 -0
  133. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py +0 -0
  134. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py +0 -0
  135. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py +0 -0
  136. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py +0 -0
  137. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_filter.py +0 -0
  138. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py +0 -0
  139. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_mask.py +0 -0
  140. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py +0 -0
  141. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py +0 -0
  142. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess/protocol_process.py +0 -0
  143. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_preprocess_micrographs.py +0 -0
  144. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_projmatch/__init__.py +0 -0
  145. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_projmatch/projmatch_form.py +0 -0
  146. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py +0 -0
  147. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_projmatch/projmatch_steps.py +0 -0
  148. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py +0 -0
  149. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_random_conical_tilt.py +0 -0
  150. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_ransac.py +0 -0
  151. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_reconstruct_fourier.py +0 -0
  152. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_reconstruct_highres.py +0 -0
  153. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_reconstruct_significant.py +0 -0
  154. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_reconstruct_swarm.py +0 -0
  155. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution3d.py +0 -0
  156. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution_bfactor.py +0 -0
  157. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution_deepres.py +0 -0
  158. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution_directional.py +0 -0
  159. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution_fso.py +0 -0
  160. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_resolution_monogenic_signal.py +0 -0
  161. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_rotate_volume.py +0 -0
  162. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_rotational_symmetry.py +0 -0
  163. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_screen_deepConsensus.py +0 -0
  164. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_screen_particles.py +0 -0
  165. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_shift_particles.py +0 -0
  166. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_shift_volume.py +0 -0
  167. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_simulate_ctf.py +0 -0
  168. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_structure_map.py +0 -0
  169. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_structure_map_zernike3d.py +0 -0
  170. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_subtract_projection.py +0 -0
  171. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_tilt_analysis.py +0 -0
  172. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_trigger_data.py +0 -0
  173. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_validate_fscq.py +0 -0
  174. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_validate_nontilt.py +0 -0
  175. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_validate_overfitting.py +0 -0
  176. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_adjust_sub.py +0 -0
  177. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_consensus.py +0 -0
  178. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_deform_zernike3d.py +0 -0
  179. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_local_adjust.py +0 -0
  180. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_local_sharpening.py +0 -0
  181. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_volume_strain.py +0 -0
  182. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_write_testC.py +0 -0
  183. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols/protocol_write_testP.py +0 -0
  184. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/protocols.conf +0 -0
  185. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/__init__.py +0 -0
  186. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_convert_xmipp.py +0 -0
  187. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_angular_graph_consistency.py +0 -0
  188. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_apply_transformation_matrix.py +0 -0
  189. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_compare_angles.py +0 -0
  190. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_consensus_classes3D.py +0 -0
  191. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_ctf_consensus.py +0 -0
  192. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_extract_asymmetric_unit.py +0 -0
  193. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_likelihood.py +0 -0
  194. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_monodir.py +0 -0
  195. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_multiple_fsc.py +0 -0
  196. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_multireference_alignability.py +0 -0
  197. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_reconstruct_fourier.py +0 -0
  198. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_screen_deepConsensus.py +0 -0
  199. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_simulate_ctf.py +0 -0
  200. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_split_frames.py +0 -0
  201. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_validate_fscq.py +0 -0
  202. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocol_validate_overfitting.py +0 -0
  203. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_add_noise.py +0 -0
  204. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_continuousflex.py +0 -0
  205. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_deepVolPostprocessing.py +0 -0
  206. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_deepcenter_predict.py +0 -0
  207. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_deepres.py +0 -0
  208. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_fso.py +0 -0
  209. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_highres.py +0 -0
  210. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_local_defocus.py +0 -0
  211. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_localdeblur.py +0 -0
  212. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_monores.py +0 -0
  213. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_realignment_classes.py +0 -0
  214. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_xmipp_2d.py +0 -0
  215. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_xmipp_3d.py +0 -0
  216. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_xmipp_mics.py +0 -0
  217. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_xmipp_movie_resize.py +0 -0
  218. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_xmipp_movies.py +0 -0
  219. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/tests/test_protocols_zernike3d.py +0 -0
  220. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/utils.py +0 -0
  221. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/__init__.py +0 -0
  222. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/plotter.py +0 -0
  223. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer.py +0 -0
  224. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_LL_matrix.py +0 -0
  225. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_analyze_local_ctf.py +0 -0
  226. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_apply_tilt_to_ctf.py +0 -0
  227. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_cl2d.py +0 -0
  228. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_cl2d_clustering.py +0 -0
  229. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_consensus_classes.py +0 -0
  230. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_ctf_consensus.py +0 -0
  231. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_deepEMHancer.py +0 -0
  232. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_deep_consensus.py +0 -0
  233. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_deep_micrograph_cleaner.py +0 -0
  234. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_dose_analysis.py +0 -0
  235. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_eliminate_empty_images.py +0 -0
  236. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_extract_asymmetric_unit.py +0 -0
  237. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_local_sharpening.py +0 -0
  238. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_ml2d.py +0 -0
  239. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_movie_alignment.py +0 -0
  240. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_normalize_strain.py +0 -0
  241. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_pdb_deform_zernike3d.py +0 -0
  242. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_projmatch.py +0 -0
  243. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_ransac.py +0 -0
  244. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_reconstruct_highres.py +0 -0
  245. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution3d.py +0 -0
  246. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution_bfactor.py +0 -0
  247. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution_deepres.py +0 -0
  248. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution_directional.py +0 -0
  249. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution_fso.py +0 -0
  250. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_resolution_monogenic_signal.py +0 -0
  251. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_structure_map.py +0 -0
  252. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_subtract_projection.py +0 -0
  253. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_swarm.py +0 -0
  254. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_validate_fscq.py +0 -0
  255. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_validate_nontilt.py +0 -0
  256. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_validate_overfitting.py +0 -0
  257. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_volume_consensus.py +0 -0
  258. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_volume_deform_zernike3d.py +0 -0
  259. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_volume_strain.py +0 -0
  260. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/viewers/viewer_volume_subtraction.py +0 -0
  261. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/wizards.py +0 -0
  262. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/xmipp_logo.png +0 -0
  263. {scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/xmipp_logo_devel.png +0 -0
{scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/CHANGELOG.md RENAMED
@@ -1,3 +1,6 @@
1
+ ## Release 3.25.06.1 - Rhea
2
+ - Disabling the default installation of dependencies to prevent breaking the scipion environment
3
+
1
4
  ## Release 3.25.06.0 - Rhea
2
5
  - New protocols
3
6
  - compute_likelihood: This protocol computes the likelihood of a set of particles with assigned angles when compared to a set of maps or atomic modelS
{scipion_em_xmipp-25.6.0/scipion_em_xmipp.egg-info → scipion_em_xmipp-25.6.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: scipion-em-xmipp
3
- Version: 25.6.0
3
+ Version: 25.6.1
4
4
  Summary: Plugin to use Xmipp programs within the Scipion framework.
5
5
  Author-email: Oier Lauzirika Zarrabeitia <oierlauzi@bizkaia.eu>, Alberto Garcia Mena <alberto.garcia@cnb.csic.es>, Carlos Oscar Sanchez Sorzano <coss@cnb.csic.es>
6
6
  License: GNU General Public License v3 (GPLv3)
{scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1/scipion_em_xmipp.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: scipion-em-xmipp
3
- Version: 25.6.0
3
+ Version: 25.6.1
4
4
  Summary: Plugin to use Xmipp programs within the Scipion framework.
5
5
  Author-email: Oier Lauzirika Zarrabeitia <oierlauzi@bizkaia.eu>, Alberto Garcia Mena <alberto.garcia@cnb.csic.es>, Carlos Oscar Sanchez Sorzano <coss@cnb.csic.es>
6
6
  License: GNU General Public License v3 (GPLv3)
{scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/__init__.py RENAMED
@@ -174,7 +174,7 @@ class Plugin(pwem.Plugin):
174
174
  tar='void.tgz',
175
175
  commands=commands.getCommands(),
176
176
  neededProgs=['conda'],
177
- default=True
177
+ default=False
178
178
  )
179
179
 
180
180
  if develMode:
{scipion_em_xmipp-25.6.0 → scipion_em_xmipp-25.6.1}/xmipp3/version.py RENAMED
@@ -29,7 +29,7 @@ type_of_version = 'release' #'release' 'devel'
29
29
  _logo = "xmipp_logo" + ("" if type_of_version == 'release' else '_devel') + '.png'
30
30
 
31
31
  _binVersion = 'v3.25.06.0' # Increase it if hotfix in binaries (xmipp, xmippCore and/or XmippViz)
32
- _pluginVersion = 'v3.25.06.0' # Increase it if hotfix in binaries (xmipp, xmippCore and/or XmippViz) or in scipion-em-xmipp
32
+ _pluginVersion = 'v3.25.06.1' # Increase it if hotfix in binaries (xmipp, xmippCore and/or XmippViz) or in scipion-em-xmipp
33
33
 
34
34
  _binTagVersion = _binVersion + '-Rhea' #'devel' or _binVersion + '-Poseidon'
35
35
  _pluginTagVersion = _pluginVersion + '-Rhea' #'devel' or _pluginVersion + '-Poseidon'