scikit-spatial 8.0.0__tar.gz → 9.0.0__tar.gz

scikit_spatial-9.0.0/.coveragerc

@@ -0,0 +1,9 @@
+[run]
+source =
+    src/
+omit =
+    */plotting.py
+
+[report]
+exclude_lines =
+    def *plot*

scikit_spatial-9.0.0/.dockerignore

@@ -0,0 +1,5 @@
+**/*.ipynb
+**/*.md5
+**/*.pickle
+**/*.pyc
+docs/source/gallery

scikit_spatial-9.0.0/.github/workflows/main.yml

@@ -0,0 +1,61 @@
+name: scikit-spatial
+
+on:
+  pull_request:
+  push:
+    tags:
+      - "v*.*.*"
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: "0.4.18"
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install tox
+        run: uv tool install tox --with tox-uv --with tox-gh
+
+      - name: Run tox
+        run: tox
+
+      - name: Upload coverage report to codecov
+        if: matrix.python-version == '3.12'
+        uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: true
+          verbose: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+  publish:
+    needs: build
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: "0.4.18"
+
+      - name: Build and publish to PyPI
+        run: |
+          uv build
+          uv publish --token ${{ secrets.PYPI_API_TOKEN }}

scikit_spatial-9.0.0/.gitignore

@@ -0,0 +1,16 @@
+*.egg-info
+*.ipynb
+*.pyc
+*.xml
+.*/
+.coverage
+.python-version
+build/
+dist/
+docs/build/
+docs/source/api_reference/*/
+docs/source/computations/*/
+docs/source/gallery/
+htmlcov/
+
+!.github/

scikit_spatial-9.0.0/.pre-commit-config.yaml

@@ -0,0 +1,22 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: check-ast
+      - id: check-builtin-literals
+      - id: check-docstring-first
+      - id: check-merge-conflict
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v3.0.0-alpha.4
+    hooks:
+      - id: prettier
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.2.1
+    hooks:
+      - id: ruff
+        args: [--fix, --preview]
+      - id: ruff-format
+        args: [--preview]

scikit_spatial-9.0.0/.readthedocs.yml

@@ -0,0 +1,13 @@
+version: 2
+
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.8"
+
+sphinx:
+  configuration: docs/source/conf.py
+
+python:
+  install:
+    - requirements: docs/source/requirements.txt

scikit_spatial-9.0.0/CITATION.cff

@@ -0,0 +1,11 @@
+cff-version: 1.2.0
+title: "scikit-spatial: Spatial objects and computations based on NumPy arrays"
+message: "If you use this software, please cite it using the metadata from this file."
+type: software
+authors:
+  - given-names: Andrew
+    family-names: Hynes
+    email: andrewjhynes@gmail.com
+license: BSD-3-Clause
+url: https://scikit-spatial.readthedocs.io
+repository-code: https://github.com/ajhynes7/scikit-spatial

scikit_spatial-9.0.0/CONTRIBUTING.rst

@@ -0,0 +1,87 @@
+============
+Contributing
+============
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://github.com/ajhynes7/scikit-spatial/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://github.com/ajhynes7/scikit-spatial/issues.
+
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `scikit-spatial` for local development.
+
+1. Fork the `scikit-spatial` repo on GitHub.
+
+2. Create a branch for local development::
+
+    $ git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+3. When you're done making changes, check that your changes pass linting and tests.
+   See ``.travis.yml`` for test commands.
+
+4. Commit your changes and push your branch to GitHub::
+
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+
+5. Submit a pull request through the GitHub website.
+
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring.
+3. Check https://travis-ci.org/ajhynes7/scikit-spatial/pull_requests
+   and make sure that the tests pass for all supported Python versions.
+
+
+Deploying
+---------
+
+A reminder for the maintainers on how to deploy.
+Make sure all your changes are committed (including an entry in HISTORY.rst).
+Then run::
+
+$ bumpversion patch # possible: major / minor / patch
+$ git push
+$ git push --tags
+
+Travis will then deploy to PyPI if tests pass.

scikit_spatial-9.0.0/HISTORY.rst

@@ -0,0 +1,360 @@
+=======
+History
+=======
+
+9.0.0 (2024-12-23)
+------------------
+
+Breaking Changes
+~~~~~~~~~~~~~~~~
+- Make matplotlib an optional dependency. It can be installed by `pip install scikit-spatial[plotting]`
+
+
+8.1.0 (2024-12-23)
+------------------
+
+Features
+~~~~~~~~
+- Add option to return error for line and plane of best fit.
+
+
+8.0.0 (2024-10-03)
+------------------
+
+Features
+~~~~~~~~
+- Support NumPy 2.0.
+
+
+7.2.2 (2024-03-27)
+------------------
+
+Fixes
+~~~~~
+- Change reference in `Plane.best_fit` docstring as the previous link was broken.
+- Change `README.rst` to `README.md` as GitHub was not rendering the former well.
+
+
+7.2.1 (2024-02-17)
+------------------
+
+Docs
+~~~~
+Include new methods in the documentation:
+  - `Line.project_points`
+  - `Line.distance_points`
+  - `Plane.project_points`
+  - `Plane.distance_points`
+
+
+7.2.0 (2024-02-12)
+------------------
+
+Features
+~~~~~~~~
+- Add new methods:
+  - `Line.project_points`
+  - `Line.distance_points`
+  - `Plane.project_points`
+  - `Plane.distance_points`
+
+
+7.1.1 (2024-01-29)
+------------------
+
+Fixes
+~~~~~
+- Restore import of `importlib_metadata`.
+
+
+7.1.0 (2024-01-28)
+------------------
+
+Features
+~~~~~~~~
+- Add support for Python 3.12.
+
+
+7.0.0 (2023-03-26)
+------------------
+
+Breaking Changes
+~~~~~~~~~~~~~~~~
+- Drop support for Python 3.7.
+- Increase minimum NumPy version to 1.17.3 (to be compatible with the new dependency SciPy).
+
+Features
+~~~~~~~~
+- Add `Cylinder.best_fit` method.
+
+
+6.8.1 (2023-03-07)
+------------------
+
+Fixes
+~~~~~
+- Add missing `plotter` method to `LineSegment`.
+
+
+6.8.0 (2023-01-28)
+------------------
+
+Features
+~~~~~~~~
+- Add `Circle.from_points` method.
+- Add `check_coplanar` kwarg to `Line.intersect_line`.
+- Lower minimum NumPy version to 1.16.
+
+
+6.7.0 (2022-12-28)
+------------------
+
+Features
+~~~~~~~~
+- Add `Circle.intersect_circle` method.
+
+
+6.6.0 (2022-11-20)
+------------------
+
+Features
+~~~~~~~~
+- Add `Vector.angle_signed_3d` method.
+
+
+6.5.0 (2022-09-05)
+------------------
+
+Features
+~~~~~~~~
+- Add `LineSegment` class.
+
+Docs
+~~~~
+- Add plot of Cylinder-Line Intersection to the gallery.
+
+
+6.4.1 (2022-06-21)
+------------------
+
+Fixes
+~~~~~
+- Update the `dimension` value of a slice, instead of using the value of the original array.
+- Fix the output radius of `Cylinder.to_mesh`.
+
+
+6.4.0 (2022-04-07)
+------------------
+
+Features
+~~~~~~~~
+- Add `Plane.project_line` method to project a line onto a plane.
+
+
+6.3.0 (2022-02-26)
+------------------
+
+Features
+~~~~~~~~
+- Add `Circle.best_fit` method to fit a circle to 2D points.
+- Add `area_signed` function to compute the signed area of a polygon using the shoelace algorithm.
+
+
+6.2.1 (2022-01-08)
+------------------
+
+Fixes
+~~~~~
+- Allow for versions of `importlib-metadata` above 1.
+
+
+6.2.0 (2021-10-06)
+------------------
+
+Features
+~~~~~~~~
+- Add `infinite` keyword argument to `Cylinder.intersect_line` with a default value of `True`.
+  Now the line can be intersected with a finite cylinder by passing `infinite=False`.
+
+Fixes
+~~~~~
+- Fix the return type hint of `Plane.intersect_line` (from Plane to Point).
+
+
+6.1.1 (2021-09-11)
+------------------
+
+Fixes
+~~~~~
+- Add code to `skspatial.__init__.py` to keep the __version__ attribute in sync with the version in `pyproject.toml`.
+
+
+6.1.0 (2021-07-25)
+------------------
+
+Features
+~~~~~~~~
+- Add `lateral_surface_area` and `surface_area` methods to `Cylinder`.
+
+Improvements
+~~~~~~~~~~~~
+- Remove unnecessary `np.copy` from `Circle.intersect_line`.
+- Complete the docstring for `Line.distance_point`.
+
+
+6.0.1 (2021-03-25)
+------------------
+
+Fixes
+~~~~~
+* Wrap `filterwarnings("error")` in a `catch_warnings` context manager, in `__BaseArray.__new__()`.
+  Now the warning level is reset at the end of the context manager.
+
+
+6.0.0 (2021-03-21)
+------------------
+
+Breaking changes
+~~~~~~~~~~~~~~~~
+* Require NumPy >= 1.20 to make use of the static types introduced in 1.20.
+  Now numpy-stubs doesn't need to be installed for static type checking.
+* Move tests outside of package, and move package under ``src`` directory.
+  This ensures that tox is running the tests with the installed package.
+* Switch from ``setup.py`` to ``pyproject.toml``.
+* Add more ValueErrors for clarity, such as "The lines must have the same dimension"
+  ValueError in ``Line.intersect_line``.
+
+Features
+~~~~~~~~
+* Add ``Cylinder`` class.
+* Add ``Vector.different_direction`` method.
+* Add ``Sphere.best_fit`` method.
+
+Refactoring
+~~~~~~~~~~~
+* Delete ``Vector.dot`` method. The ``dot`` method is already inherited from NumPy.
+
+
+5.2.0 (2020-12-19)
+------------------
+* Add keyword arguments to ``Plane.best_fit`` and ``Line.best_fit``.
+  These are passed to ``np.linalg.svd``.
+
+
+5.1.0 (2020-12-07)
+------------------
+* Edit type annotations to support Python 3.6.
+* CI now tests Python versions 3.6-3.9.
+
+
+5.0.0 (2020-11-23)
+------------------
+* Return regular ``ndarray`` from inherited NumPy functions, e.g. ``vector.sum()``
+  - This prevents getting spatial objects with disallowed dimensions, such as a 0-D vector.
+  - This fixes broken examples in the README.
+* Test README examples with doctest.
+* Replace tox with Docker.
+  - Docker multi-stage builds are a convenient feature for isolating test environments.
+* Organize requirements into multiple files.
+  - This makes it easy to install only what's needed for each test environment.
+
+
+4.0.1 (2020-02-01)
+------------------
+* Fix to replace Python 3.6 with 3.8 in the setup.py file.
+
+
+4.0.0 (2020-02-01)
+------------------
+* Drop support for Python 3.6 (this allows for postponed evaluation of type annotations, introduced in Python 3.7).
+* Add Triangle class.
+
+
+3.0.0 (2019-11-02)
+------------------
+* Add `Points.normalize_distance` method to fit points inside a unit sphere.
+* Change `Points.mean_center` to only return the centroid of the points if specified.
+  This allows for chaining with other transformations on points, like `normalize_distance`.
+* Add `to_array` method to convert an array based object to a regular NumPy array.
+
+
+2.0.1 (2019-08-15)
+------------------
+* Use installation of numpy-stubs from its GitHub repository instead of a custom numpy stubs folder.
+* Introduce 'array_like' type annotation as the union of np.ndarray and Sequence.
+* Add py.typed file so that annotations can be used when scikit-spatial is installed.
+
+
+2.0.0 (2019-07-20)
+------------------
+* Replace some NumPy functions with ones from Python math module. The math functions are faster than NumPy when the inputs are scalars.
+  The tolerances for isclose are now rel_tol and abs_tol instead of rtol and atol.
+  The math.isclose function is preferable to np.isclose for three main reasons:
+    * It is symmetric (isclose(a, b) == isclose(b, a)).
+    * It has a default absolute tolerance of zero.
+    * It does not correlate the absolute and relative tolerances.
+* Add type annotations to methods and run mypy in Travis CI.
+* Add round method to array objects (Point, Points and Vector). Now a Vector is returned when a Vector is rounded.
+* Add methods to return coordinates on the surface of a Plane or Sphere. The coordinates are used for 3D plotting.
+* Improve Plane plotting so that vertical planes can be plotted.
+
+
+1.5.0 (2019-07-04)
+------------------
+* Add Circle and Sphere spatial objects.
+* Add scalar keyword argument to Vector plot methods.
+* Improve plotting of Plane. The x and y limits now treat the plane point as the origin.
+
+
+1.4.2 (2019-06-21)
+------------------
+* Extra release because regex for version tags was incorrect in Travis.
+
+
+1.4.1 (2019-06-21)
+------------------
+* Extra release because Travis did not deploy the last one.
+
+
+1.4.0 (2019-06-21)
+------------------
+* Add functions `plot_2d` and `plot_3d` to facilitate plotting multiple spatial objects.
+* Change `_plotting` module name to `plotting`, because it now contains some public functions.
+
+
+1.3.0 (2019-06-19)
+------------------
+* Remove dpcontracts as a dependency. The contracts were causing performance issues.
+* Add 'dimension' attribute to all spatial objects.
+* Add Vector.angle_signed method.
+* Add Line.from_slope method.
+
+
+1.2.0 (2019-06-11)
+------------------
+* Move tests into skspatial directory. This allows for importing custom hypothesis strategies for testing other projects.
+* Drop support for Python 3.5 (matplotlib requires >= 3.6).
+
+
+1.1.0 (2019-05-04)
+------------------
+* Add methods for 2D and 3D plotting.
+* Rename private modules and functions to include leading underscore.
+
+
+1.0.1 (2019-03-29)
+------------------
+* Support Python versions 3.5-3.7.
+
+
+1.0.0 (2019-03-26)
+------------------
+* Change Vector and Point to be subclasses of the NumPy `ndarray`.
+* Change all spatial objects to accept `array_like` inputs, such as a list or tuple.
+* Add the Points class to represent multiple points in space. This is also an `ndarray` subclass.
+* The dimension of the objects is no longer automatically set to 3D. Points and vectors can be 2D and up.
+
+
+0.1.0 (2019-02-27)
+------------------
+* First release on PyPI.

{scikit_spatial-8.0.0/src/scikit_spatial.egg-info → scikit_spatial-9.0.0}/PKG-INFO

@@ -1,12 +1,14 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: scikit-spatial
-Version: 8.0.0
+Version: 9.0.0
 Summary: Spatial objects and computations based on NumPy arrays.
-Author-email: Andrew Hynes <andrewjhynes@gmail.com>
-License: BSD-3-Clause
 Project-URL: repository, https://github.com/ajhynes7/scikit-spatial
 Project-URL: documentation, https://scikit-spatial.readthedocs.io
-Keywords: NumPy,matplotlib,visualization,spatial,linear algebra
+Author-email: Andrew Hynes <andrewjhynes@gmail.com>
+License: BSD-3-Clause
+License-File: AUTHORS.rst
+License-File: LICENSE
+Keywords: NumPy,linear algebra,matplotlib,spatial,visualization
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: BSD License
@@ -18,12 +20,13 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering
 Requires-Python: >=3.8
+Requires-Dist: numpy>1.24; python_version >= '3.12'
+Requires-Dist: numpy>=1; python_version < '3.12'
+Requires-Dist: scipy>1.11; python_version >= '3.12'
+Requires-Dist: scipy>=1; python_version < '3.12'
+Provides-Extra: plotting
+Requires-Dist: matplotlib>=3; extra == 'plotting'
 Description-Content-Type: text/markdown
-License-File: LICENSE
-License-File: AUTHORS.rst
-Requires-Dist: matplotlib>=3
-Requires-Dist: numpy>=1.24
-Requires-Dist: scipy>=1.9
 
 ![](images/logo.svg)
 
@@ -31,7 +34,6 @@ Requires-Dist: scipy>=1.9
 [![image](https://anaconda.org/conda-forge/scikit-spatial/badges/version.svg)](https://anaconda.org/conda-forge/scikit-spatial)
 [![image](https://img.shields.io/pypi/pyversions/scikit-spatial.svg)](https://pypi.python.org/pypi/scikit-spatial)
 [![image](https://github.com/ajhynes7/scikit-spatial/actions/workflows/main.yml/badge.svg)](https://github.com/ajhynes7/scikit-spatial/actions/workflows/main.yml)
-[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/ajhynes7/scikit-spatial/master.svg)](https://results.pre-commit.ci/latest/github/ajhynes7/scikit-spatial/master)
 [![Documentation Status](https://readthedocs.org/projects/scikit-spatial/badge/?version=latest)](https://scikit-spatial.readthedocs.io/en/latest/?badge=latest)
 [![image](https://codecov.io/gh/ajhynes7/scikit-spatial/branch/master/graph/badge.svg)](https://codecov.io/gh/ajhynes7/scikit-spatial)
 
@@ -178,6 +180,13 @@ $ conda install scikit-spatial -c conda-forge
 
 ```
 
+The `matplotlib` dependency is optional. To enable plotting, you can install scikit-spatial with the extra `plotting`.
+
+```bash
+   $ pip install scikit-spatial[plotting]
+
+```
+
 # Example Usage
 
 ## Measurement

{scikit_spatial-8.0.0 → scikit_spatial-9.0.0}/README.md

@@ -4,7 +4,6 @@
 [![image](https://anaconda.org/conda-forge/scikit-spatial/badges/version.svg)](https://anaconda.org/conda-forge/scikit-spatial)
 [![image](https://img.shields.io/pypi/pyversions/scikit-spatial.svg)](https://pypi.python.org/pypi/scikit-spatial)
 [![image](https://github.com/ajhynes7/scikit-spatial/actions/workflows/main.yml/badge.svg)](https://github.com/ajhynes7/scikit-spatial/actions/workflows/main.yml)
-[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/ajhynes7/scikit-spatial/master.svg)](https://results.pre-commit.ci/latest/github/ajhynes7/scikit-spatial/master)
 [![Documentation Status](https://readthedocs.org/projects/scikit-spatial/badge/?version=latest)](https://scikit-spatial.readthedocs.io/en/latest/?badge=latest)
 [![image](https://codecov.io/gh/ajhynes7/scikit-spatial/branch/master/graph/badge.svg)](https://codecov.io/gh/ajhynes7/scikit-spatial)
 
@@ -151,6 +150,13 @@ $ conda install scikit-spatial -c conda-forge
 
 ```
 
+The `matplotlib` dependency is optional. To enable plotting, you can install scikit-spatial with the extra `plotting`.
+
+```bash
+   $ pip install scikit-spatial[plotting]
+
+```
+
 # Example Usage
 
 ## Measurement

scikit_spatial-9.0.0/docs/source/api_reference/skspatial.measurement.rst

@@ -0,0 +1,13 @@
+
+skspatial.measurement
+=====================
+
+.. automodule:: skspatial.measurement
+
+
+.. autosummary::
+   :toctree: measurement/functions
+
+   area_signed
+   area_triangle
+   volume_tetrahedron