scikit-network 0.33.0__tar.gz → 0.33.3__tar.gz

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  1. {scikit-network-0.33.0 → scikit_network-0.33.3}/HISTORY.rst +17 -0
  2. scikit_network-0.33.3/PKG-INFO +122 -0
  3. scikit_network-0.33.3/pyproject.toml +46 -0
  4. scikit_network-0.33.3/scikit_network.egg-info/PKG-INFO +122 -0
  5. {scikit-network-0.33.0 → scikit_network-0.33.3}/scikit_network.egg-info/SOURCES.txt +13 -0
  6. scikit_network-0.33.3/scikit_network.egg-info/requires.txt +7 -0
  7. {scikit-network-0.33.0 → scikit_network-0.33.3}/setup.cfg +1 -4
  8. {scikit-network-0.33.0 → scikit_network-0.33.3}/setup.py +3 -42
  9. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/diffusion.py +1 -1
  10. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/knn.py +1 -1
  11. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/metrics.py +3 -3
  12. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/pagerank.py +1 -1
  13. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/propagation.py +1 -1
  14. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/vote.cpp +724 -681
  15. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/leiden_core.cpp +753 -706
  16. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/louvain.py +3 -3
  17. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/louvain_core.cpp +753 -706
  18. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/metrics.py +1 -1
  19. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_louvain.py +6 -0
  20. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/base_activation.py +1 -0
  21. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/gnn_classifier.py +1 -1
  22. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/metrics.py +3 -3
  23. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/paris.cpp +1817 -1159
  24. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/diteration.cpp +724 -681
  25. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/push.cpp +1814 -1155
  26. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/sparse_lowrank.py +1 -1
  27. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/ranking/betweenness.cpp +603 -561
  28. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/cliques.cpp +1765 -1110
  29. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/core.cpp +1791 -1139
  30. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/cycles.py +2 -2
  31. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/minheap.cpp +727 -681
  32. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/triangles.cpp +478 -437
  33. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/topology/weisfeiler_lehman_core.cpp +724 -681
  34. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/visualization/graphs.py +1 -1
  35. scikit-network-0.33.0/PKG-INFO +0 -515
  36. scikit-network-0.33.0/scikit_network.egg-info/PKG-INFO +0 -515
  37. scikit-network-0.33.0/scikit_network.egg-info/requires.txt +0 -2
  38. {scikit-network-0.33.0 → scikit_network-0.33.3}/AUTHORS.rst +0 -0
  39. {scikit-network-0.33.0 → scikit_network-0.33.3}/CONTRIBUTING.rst +0 -0
  40. {scikit-network-0.33.0 → scikit_network-0.33.3}/LICENSE +0 -0
  41. {scikit-network-0.33.0 → scikit_network-0.33.3}/MANIFEST.in +0 -0
  42. {scikit-network-0.33.0 → scikit_network-0.33.3}/README.rst +0 -0
  43. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/Makefile +0 -0
  44. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/authors.rst +0 -0
  45. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/conf.py +0 -0
  46. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/contributing.rst +0 -0
  47. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/first_steps.rst +0 -0
  48. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/genindex.rst +0 -0
  49. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/glossary.rst +0 -0
  50. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/history.rst +0 -0
  51. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/index.rst +0 -0
  52. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/make.bat +0 -0
  53. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/readme.rst +0 -0
  54. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/classification.rst +0 -0
  55. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/clustering.rst +0 -0
  56. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/data.rst +0 -0
  57. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/embedding.rst +0 -0
  58. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/gnn.rst +0 -0
  59. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/hierarchy.rst +0 -0
  60. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/linalg.rst +0 -0
  61. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/linkpred.rst +0 -0
  62. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/path.rst +0 -0
  63. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/ranking.rst +0 -0
  64. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/regression.rst +0 -0
  65. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/topology.rst +0 -0
  66. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/utils.rst +0 -0
  67. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/reference/visualization.rst +0 -0
  68. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/classification/index.rst +0 -0
  69. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/clustering/index.rst +0 -0
  70. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/data/index.rst +0 -0
  71. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/embedding/index.rst +0 -0
  72. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/gnn/index.rst +0 -0
  73. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/hierarchy/index.rst +0 -0
  74. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/linkpred/index.rst +0 -0
  75. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/overview/index.rst +0 -0
  76. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/path/index.rst +0 -0
  77. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/ranking/index.rst +0 -0
  78. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/regression/index.rst +0 -0
  79. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/topology/index.rst +0 -0
  80. {scikit-network-0.33.0 → scikit_network-0.33.3}/docs/tutorials/visualization/index.rst +0 -0
  81. {scikit-network-0.33.0 → scikit_network-0.33.3}/scikit_network.egg-info/dependency_links.txt +0 -0
  82. {scikit-network-0.33.0 → scikit_network-0.33.3}/scikit_network.egg-info/not-zip-safe +0 -0
  83. {scikit-network-0.33.0 → scikit_network-0.33.3}/scikit_network.egg-info/top_level.txt +0 -0
  84. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/__init__.py +0 -0
  85. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/base.py +0 -0
  86. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/__init__.py +0 -0
  87. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/base.py +0 -0
  88. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/base_rank.py +0 -0
  89. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/__init__.py +0 -0
  90. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_API.py +0 -0
  91. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_diffusion.py +0 -0
  92. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_knn.py +0 -0
  93. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_metrics.py +0 -0
  94. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_pagerank.py +0 -0
  95. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/tests/test_propagation.py +0 -0
  96. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/vote.pyx +0 -0
  97. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/__init__.py +0 -0
  98. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/base.py +0 -0
  99. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/kcenters.py +0 -0
  100. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/leiden.py +0 -0
  101. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/leiden_core.pyx +0 -0
  102. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/louvain_core.pyx +0 -0
  103. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/postprocess.py +0 -0
  104. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/propagation_clustering.py +0 -0
  105. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/__init__.py +0 -0
  106. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_API.py +0 -0
  107. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_kcenters.py +0 -0
  108. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_leiden.py +0 -0
  109. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_metrics.py +0 -0
  110. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/clustering/tests/test_postprocess.py +0 -0
  111. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/__init__.py +0 -0
  112. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/base.py +0 -0
  113. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/load.py +0 -0
  114. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/models.py +0 -0
  115. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/parse.py +0 -0
  116. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/test_graphs.py +0 -0
  117. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/__init__.py +0 -0
  118. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_API.py +0 -0
  119. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_base.py +0 -0
  120. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_load.py +0 -0
  121. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_models.py +0 -0
  122. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_parse.py +0 -0
  123. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_test_graphs.py +0 -0
  124. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/tests/test_toy_graphs.py +0 -0
  125. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/timeout.py +0 -0
  126. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/data/toy_graphs.py +0 -0
  127. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/__init__.py +0 -0
  128. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/base.py +0 -0
  129. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/force_atlas.py +0 -0
  130. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/louvain_embedding.py +0 -0
  131. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/random_projection.py +0 -0
  132. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/spectral.py +0 -0
  133. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/spring.py +0 -0
  134. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/svd.py +0 -0
  135. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/__init__.py +0 -0
  136. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_API.py +0 -0
  137. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_force_atlas.py +0 -0
  138. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_louvain_embedding.py +0 -0
  139. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_random_projection.py +0 -0
  140. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_spectral.py +0 -0
  141. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_spring.py +0 -0
  142. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/embedding/tests/test_svd.py +0 -0
  143. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/__init__.py +0 -0
  144. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/activation.py +0 -0
  145. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/base.py +0 -0
  146. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/base_layer.py +0 -0
  147. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/layer.py +0 -0
  148. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/loss.py +0 -0
  149. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/neighbor_sampler.py +0 -0
  150. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/optimizer.py +0 -0
  151. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/__init__.py +0 -0
  152. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_activation.py +0 -0
  153. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_base.py +0 -0
  154. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_base_layer.py +0 -0
  155. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_gnn_classifier.py +0 -0
  156. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_layers.py +0 -0
  157. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_loss.py +0 -0
  158. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_neigh_sampler.py +0 -0
  159. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_optimizer.py +0 -0
  160. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/tests/test_utils.py +0 -0
  161. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/gnn/utils.py +0 -0
  162. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/__init__.py +0 -0
  163. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/base.py +0 -0
  164. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/louvain_hierarchy.py +0 -0
  165. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/paris.pyx +0 -0
  166. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/postprocess.py +0 -0
  167. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/tests/__init__.py +0 -0
  168. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/tests/test_API.py +0 -0
  169. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/tests/test_algos.py +0 -0
  170. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/tests/test_metrics.py +0 -0
  171. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/hierarchy/tests/test_postprocess.py +0 -0
  172. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/__init__.py +0 -0
  173. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/basics.py +0 -0
  174. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/diteration.pyx +0 -0
  175. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/eig_solver.py +0 -0
  176. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/laplacian.py +0 -0
  177. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/normalizer.py +0 -0
  178. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/operators.py +0 -0
  179. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/polynome.py +0 -0
  180. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/ppr_solver.py +0 -0
  181. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/push.pyx +0 -0
  182. {scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/linalg/svd_solver.py +0 -0
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{scikit-network-0.33.0 → scikit_network-0.33.3}/HISTORY.rst RENAMED
@@ -2,6 +2,23 @@
2
2
  History
3
3
  =======
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4
 
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+ 0.33.3 (2025-05-15)
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+ -------------------
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+
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+ * Fix wheel generation for Python 3.13
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+
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+ 0.33.2 (2025-05-12)
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+ -------------------
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+
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+ * Add Python 3.13
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+ * Add wheel for aarch64
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+ * Fix bug on color display
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+
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+ 0.33.1 (2024-09-18)
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+ -------------------
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+
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+ * Upgrade Numpy
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+
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  0.33.0 (2024-07-16)
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  -------------------
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scikit_network-0.33.3/PKG-INFO ADDED
@@ -0,0 +1,122 @@
1
+ Metadata-Version: 2.4
2
+ Name: scikit-network
3
+ Version: 0.33.3
4
+ Summary: Graph algorithms
5
+ Author: Scikit-network team
6
+ Maintainer-email: Thomas Bonald <bonald@enst.fr>
7
+ License: BSD License
8
+ Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
9
+ Project-URL: Documentation, https://scikit-network.readthedocs.io/
10
+ Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
11
+ Keywords: sknetwork
12
+ Classifier: Development Status :: 3 - Alpha
13
+ Classifier: Intended Audience :: Developers
14
+ Classifier: Intended Audience :: Information Technology
15
+ Classifier: Intended Audience :: Education
16
+ Classifier: Intended Audience :: Science/Research
17
+ Classifier: License :: OSI Approved :: BSD License
18
+ Classifier: Natural Language :: English
19
+ Classifier: Programming Language :: Cython
20
+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
23
+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
25
+ Requires-Python: >=3.9
26
+ Description-Content-Type: text/x-rst
27
+ License-File: LICENSE
28
+ License-File: AUTHORS.rst
29
+ Requires-Dist: numpy>=1.22.4
30
+ Requires-Dist: scipy>=1.7.3
31
+ Provides-Extra: test
32
+ Requires-Dist: pytest; extra == "test"
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+ Requires-Dist: note; extra == "test"
34
+ Requires-Dist: pluggy>=0.7.1; extra == "test"
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+ Dynamic: license-file
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+
37
+ .. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
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+ :align: right
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+ :width: 150px
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+ :alt: logo sknetwork
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+
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+
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+
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+ .. image:: https://img.shields.io/pypi/v/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
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+ .. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
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+ :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
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+
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+ .. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
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+ :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
52
+ :alt: Documentation Status
53
+
54
+ .. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
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+ :target: https://codecov.io/gh/sknetwork-team/scikit-network
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+
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+ .. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
58
+ :target: https://pypi.python.org/pypi/scikit-network
59
+
60
+ Free software library in Python for machine learning on graphs:
61
+
62
+ * Memory-efficient representation of graphs as sparse matrices in scipy_ format
63
+ * Fast algorithms
64
+ * Simple API inspired by scikit-learn_
65
+
66
+ .. _scipy: https://www.scipy.org
67
+ .. _scikit-learn: https://scikit-learn.org/
68
+
69
+ Resources
70
+ ---------
71
+
72
+ * Free software: BSD license
73
+ * GitHub: https://github.com/sknetwork-team/scikit-network
74
+ * Documentation: https://scikit-network.readthedocs.io
75
+
76
+ Quick start
77
+ -----------
78
+
79
+ Install scikit-network:
80
+
81
+ .. code-block:: console
82
+
83
+ $ pip install scikit-network
84
+
85
+ Import scikit-network::
86
+
87
+ import sknetwork
88
+
89
+ Overview
90
+ --------
91
+
92
+ An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
93
+
94
+ Documentation
95
+ -------------
96
+
97
+ The documentation is structured as follows:
98
+
99
+ * `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
100
+ * `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
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+ * `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
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+ * `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
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+ * `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
104
+
105
+ Citing
106
+ ------
107
+
108
+ If you want to cite scikit-network, please refer to the publication in
109
+ the `Journal of Machine Learning Research <https://jmlr.org>`_:
110
+
111
+ .. code::
112
+
113
+ @article{JMLR:v21:20-412,
114
+ author = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
115
+ title = {Scikit-network: Graph Analysis in Python},
116
+ journal = {Journal of Machine Learning Research},
117
+ year = {2020},
118
+ volume = {21},
119
+ number = {185},
120
+ pages = {1-6},
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+ url = {http://jmlr.org/papers/v21/20-412.html}
122
+ }
scikit_network-0.33.3/pyproject.toml ADDED
@@ -0,0 +1,46 @@
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+ [build-system]
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+ requires = [
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+ "numpy",
4
+ "setuptools",
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+ "scipy",
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+ "pytest-runner",
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+ "cython <= 3.0.12",
8
+ ]
9
+ build-backend = "setuptools.build_meta"
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+
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+
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+ [project]
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+ name = "scikit-network"
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+ version = "0.33.3"
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+ dependencies = ['numpy>=1.22.4', 'scipy>=1.7.3']
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+ authors = [{name = "Scikit-network team"}]
17
+ maintainers = [{name = "Thomas Bonald", email = "bonald@enst.fr"}]
18
+ description = "Graph algorithms"
19
+ readme = "README.rst"
20
+ license = {text = "BSD License"}
21
+ keywords = ["sknetwork"]
22
+ classifiers=[
23
+ 'Development Status :: 3 - Alpha',
24
+ 'Intended Audience :: Developers',
25
+ 'Intended Audience :: Information Technology',
26
+ 'Intended Audience :: Education',
27
+ 'Intended Audience :: Science/Research',
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+ 'License :: OSI Approved :: BSD License',
29
+ 'Natural Language :: English',
30
+ 'Programming Language :: Cython',
31
+ 'Programming Language :: Python :: 3.9',
32
+ 'Programming Language :: Python :: 3.10',
33
+ 'Programming Language :: Python :: 3.11',
34
+ 'Programming Language :: Python :: 3.12',
35
+ 'Programming Language :: Python :: 3.13'
36
+ ]
37
+ requires-python = ">= 3.9"
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+
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+ [project.optional-dependencies]
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+ test = ["pytest", "note", "pluggy>=0.7.1"]
41
+
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+ [project.urls]
43
+ Repository = "https://github.com/sknetwork-team/scikit-network"
44
+ Documentation = "https://scikit-network.readthedocs.io/"
45
+ Changelog = "https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst"
46
+
scikit_network-0.33.3/scikit_network.egg-info/PKG-INFO ADDED
@@ -0,0 +1,122 @@
1
+ Metadata-Version: 2.4
2
+ Name: scikit-network
3
+ Version: 0.33.3
4
+ Summary: Graph algorithms
5
+ Author: Scikit-network team
6
+ Maintainer-email: Thomas Bonald <bonald@enst.fr>
7
+ License: BSD License
8
+ Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
9
+ Project-URL: Documentation, https://scikit-network.readthedocs.io/
10
+ Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
11
+ Keywords: sknetwork
12
+ Classifier: Development Status :: 3 - Alpha
13
+ Classifier: Intended Audience :: Developers
14
+ Classifier: Intended Audience :: Information Technology
15
+ Classifier: Intended Audience :: Education
16
+ Classifier: Intended Audience :: Science/Research
17
+ Classifier: License :: OSI Approved :: BSD License
18
+ Classifier: Natural Language :: English
19
+ Classifier: Programming Language :: Cython
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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+ Requires-Python: >=3.9
26
+ Description-Content-Type: text/x-rst
27
+ License-File: LICENSE
28
+ License-File: AUTHORS.rst
29
+ Requires-Dist: numpy>=1.22.4
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+ Requires-Dist: scipy>=1.7.3
31
+ Provides-Extra: test
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+ Requires-Dist: pytest; extra == "test"
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+ Requires-Dist: note; extra == "test"
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+ Requires-Dist: pluggy>=0.7.1; extra == "test"
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+ Dynamic: license-file
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+
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+ .. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
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+ :align: right
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+ :width: 150px
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+ :alt: logo sknetwork
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+
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+
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+
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+ .. image:: https://img.shields.io/pypi/v/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
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+ .. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
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+ :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
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+
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+ .. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
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+ :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
52
+ :alt: Documentation Status
53
+
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+ .. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
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+ :target: https://codecov.io/gh/sknetwork-team/scikit-network
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+
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+ .. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
58
+ :target: https://pypi.python.org/pypi/scikit-network
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+
60
+ Free software library in Python for machine learning on graphs:
61
+
62
+ * Memory-efficient representation of graphs as sparse matrices in scipy_ format
63
+ * Fast algorithms
64
+ * Simple API inspired by scikit-learn_
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+
66
+ .. _scipy: https://www.scipy.org
67
+ .. _scikit-learn: https://scikit-learn.org/
68
+
69
+ Resources
70
+ ---------
71
+
72
+ * Free software: BSD license
73
+ * GitHub: https://github.com/sknetwork-team/scikit-network
74
+ * Documentation: https://scikit-network.readthedocs.io
75
+
76
+ Quick start
77
+ -----------
78
+
79
+ Install scikit-network:
80
+
81
+ .. code-block:: console
82
+
83
+ $ pip install scikit-network
84
+
85
+ Import scikit-network::
86
+
87
+ import sknetwork
88
+
89
+ Overview
90
+ --------
91
+
92
+ An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
93
+
94
+ Documentation
95
+ -------------
96
+
97
+ The documentation is structured as follows:
98
+
99
+ * `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
100
+ * `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
101
+ * `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
102
+ * `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
103
+ * `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
104
+
105
+ Citing
106
+ ------
107
+
108
+ If you want to cite scikit-network, please refer to the publication in
109
+ the `Journal of Machine Learning Research <https://jmlr.org>`_:
110
+
111
+ .. code::
112
+
113
+ @article{JMLR:v21:20-412,
114
+ author = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
115
+ title = {Scikit-network: Graph Analysis in Python},
116
+ journal = {Journal of Machine Learning Research},
117
+ year = {2020},
118
+ volume = {21},
119
+ number = {185},
120
+ pages = {1-6},
121
+ url = {http://jmlr.org/papers/v21/20-412.html}
122
+ }
{scikit-network-0.33.0 → scikit_network-0.33.3}/scikit_network.egg-info/SOURCES.txt RENAMED
@@ -4,6 +4,7 @@ HISTORY.rst
4
4
  LICENSE
5
5
  MANIFEST.in
6
6
  README.rst
7
+ pyproject.toml
7
8
  setup.cfg
8
9
  setup.py
9
10
  ./sknetwork/classification/vote.cpp
@@ -76,6 +77,7 @@ sknetwork/classification/knn.py
76
77
  sknetwork/classification/metrics.py
77
78
  sknetwork/classification/pagerank.py
78
79
  sknetwork/classification/propagation.py
80
+ sknetwork/classification/vote.cpp
79
81
  sknetwork/classification/vote.pyx
80
82
  sknetwork/classification/tests/__init__.py
81
83
  sknetwork/classification/tests/test_API.py
@@ -88,8 +90,10 @@ sknetwork/clustering/__init__.py
88
90
  sknetwork/clustering/base.py
89
91
  sknetwork/clustering/kcenters.py
90
92
  sknetwork/clustering/leiden.py
93
+ sknetwork/clustering/leiden_core.cpp
91
94
  sknetwork/clustering/leiden_core.pyx
92
95
  sknetwork/clustering/louvain.py
96
+ sknetwork/clustering/louvain_core.cpp
93
97
  sknetwork/clustering/louvain_core.pyx
94
98
  sknetwork/clustering/metrics.py
95
99
  sknetwork/clustering/postprocess.py
@@ -158,6 +162,7 @@ sknetwork/hierarchy/__init__.py
158
162
  sknetwork/hierarchy/base.py
159
163
  sknetwork/hierarchy/louvain_hierarchy.py
160
164
  sknetwork/hierarchy/metrics.py
165
+ sknetwork/hierarchy/paris.cpp
161
166
  sknetwork/hierarchy/paris.pyx
162
167
  sknetwork/hierarchy/postprocess.py
163
168
  sknetwork/hierarchy/tests/__init__.py
@@ -167,6 +172,7 @@ sknetwork/hierarchy/tests/test_metrics.py
167
172
  sknetwork/hierarchy/tests/test_postprocess.py
168
173
  sknetwork/linalg/__init__.py
169
174
  sknetwork/linalg/basics.py
175
+ sknetwork/linalg/diteration.cpp
170
176
  sknetwork/linalg/diteration.pyx
171
177
  sknetwork/linalg/eig_solver.py
172
178
  sknetwork/linalg/laplacian.py
@@ -174,6 +180,7 @@ sknetwork/linalg/normalizer.py
174
180
  sknetwork/linalg/operators.py
175
181
  sknetwork/linalg/polynome.py
176
182
  sknetwork/linalg/ppr_solver.py
183
+ sknetwork/linalg/push.cpp
177
184
  sknetwork/linalg/push.pyx
178
185
  sknetwork/linalg/sparse_lowrank.py
179
186
  sknetwork/linalg/svd_solver.py
@@ -203,6 +210,7 @@ sknetwork/path/tests/test_search.py
203
210
  sknetwork/path/tests/test_shortest_path.py
204
211
  sknetwork/ranking/__init__.py
205
212
  sknetwork/ranking/base.py
213
+ sknetwork/ranking/betweenness.cpp
206
214
  sknetwork/ranking/betweenness.pyx
207
215
  sknetwork/ranking/closeness.py
208
216
  sknetwork/ranking/hits.py
@@ -223,14 +231,19 @@ sknetwork/regression/tests/__init__.py
223
231
  sknetwork/regression/tests/test_API.py
224
232
  sknetwork/regression/tests/test_diffusion.py
225
233
  sknetwork/topology/__init__.py
234
+ sknetwork/topology/cliques.cpp
226
235
  sknetwork/topology/cliques.pyx
236
+ sknetwork/topology/core.cpp
227
237
  sknetwork/topology/core.pyx
228
238
  sknetwork/topology/cycles.py
239
+ sknetwork/topology/minheap.cpp
229
240
  sknetwork/topology/minheap.pxd
230
241
  sknetwork/topology/minheap.pyx
231
242
  sknetwork/topology/structure.py
243
+ sknetwork/topology/triangles.cpp
232
244
  sknetwork/topology/triangles.pyx
233
245
  sknetwork/topology/weisfeiler_lehman.py
246
+ sknetwork/topology/weisfeiler_lehman_core.cpp
234
247
  sknetwork/topology/weisfeiler_lehman_core.pyx
235
248
  sknetwork/topology/tests/__init__.py
236
249
  sknetwork/topology/tests/test_cliques.py
scikit_network-0.33.3/scikit_network.egg-info/requires.txt ADDED
@@ -0,0 +1,7 @@
1
+ numpy>=1.22.4
2
+ scipy>=1.7.3
3
+
4
+ [test]
5
+ pytest
6
+ note
7
+ pluggy>=0.7.1
{scikit-network-0.33.0 → scikit_network-0.33.3}/setup.cfg RENAMED
@@ -1,5 +1,5 @@
1
1
  [bumpversion]
2
- current_version = 0.33.0
2
+ current_version = 0.33.2
3
3
  commit = True
4
4
  tag = True
5
5
 
@@ -20,9 +20,6 @@ test = pytest
20
20
  [tool:pytest]
21
21
  collect_ignore = ['setup.py']
22
22
 
23
- [options]
24
- python_requires = >=3.9
25
-
26
23
  [egg_info]
27
24
  tag_build =
28
25
  tag_date = 0
{scikit-network-0.33.0 → scikit_network-0.33.3}/setup.py RENAMED
@@ -2,25 +2,15 @@
2
2
  # -*- coding: utf-8 -*-
3
3
  """Setup script."""
4
4
 
5
+ import numpy
5
6
 
6
7
  from setuptools import find_packages, setup, Extension
7
8
  from sysconfig import get_platform
8
9
  from distutils.command.build_ext import build_ext
9
10
  import os
11
+ import builtins
10
12
  from glob import glob
11
13
 
12
- import numpy
13
-
14
- with open('README.rst') as readme_file:
15
- readme = readme_file.read()
16
-
17
- with open('HISTORY.rst') as history_file:
18
- history = history_file.read()
19
-
20
- requirements = ['numpy>=1.22.4', 'scipy>=1.7.3']
21
-
22
- setup_requirements = ['pytest-runner']
23
-
24
14
  test_requirements = ['pytest', 'nose', 'pluggy>=0.7.1']
25
15
 
26
16
  # if any problems occur with macOS' clang not knowing the -fopenmp flag, see:
@@ -55,7 +45,6 @@ if platform.startswith("win"):
55
45
  EXTRA_COMPILE_ARGS = ['/d2FH4-']
56
46
  EXTRA_LINK_ARGS = []
57
47
 
58
-
59
48
  class BuildExtSubclass(build_ext):
60
49
  def build_options(self):
61
50
  for e in self.extensions:
@@ -74,8 +63,7 @@ class BuildExtSubclass(build_ext):
74
63
  def finalize_options(self):
75
64
  build_ext.finalize_options(self)
76
65
  # Prevent numpy from thinking it is still in its setup process:
77
- __builtins__.__NUMPY_SETUP__ = False
78
- import numpy
66
+ builtins.__NUMPY_SETUP__ = False
79
67
  self.include_dirs.append(numpy.get_include())
80
68
 
81
69
 
@@ -124,36 +112,9 @@ else:
124
112
 
125
113
 
126
114
  setup(
127
- author="Scikit-network team",
128
- author_email='bonald@enst.fr',
129
- classifiers=[
130
- 'Development Status :: 3 - Alpha',
131
- 'Intended Audience :: Developers',
132
- 'Intended Audience :: Information Technology',
133
- 'Intended Audience :: Education',
134
- 'Intended Audience :: Science/Research',
135
- 'License :: OSI Approved :: BSD License',
136
- 'Natural Language :: English',
137
- 'Programming Language :: Cython',
138
- 'Programming Language :: Python :: 3.9',
139
- 'Programming Language :: Python :: 3.10',
140
- 'Programming Language :: Python :: 3.11',
141
- 'Programming Language :: Python :: 3.12'
142
- ],
143
- description="Graph algorithms",
144
- install_requires=requirements,
145
- license="BSD license",
146
- long_description=readme + '\n\n' + history,
147
- long_description_content_type='text/x-rst',
148
- include_package_data=True,
149
- keywords='sknetwork',
150
- name='scikit-network',
151
115
  packages=find_packages(),
152
- setup_requires=setup_requirements,
153
116
  test_suite='tests',
154
117
  tests_require=test_requirements,
155
- url='https://github.com/sknetwork-team/scikit-network',
156
- version='0.33.0',
157
118
  zip_safe=False,
158
119
  ext_modules=ext_modules,
159
120
  include_dirs=[numpy.get_include()],
{scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/diffusion.py RENAMED
@@ -55,7 +55,7 @@ class DiffusionClassifier(BaseClassifier):
55
55
  >>> labels_true = graph.labels
56
56
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
57
57
  >>> labels_pred = diffusion.fit_predict(adjacency, labels)
58
- >>> round(np.mean(labels_pred == labels_true), 2)
58
+ >>> float(round(np.mean(labels_pred == labels_true), 2))
59
59
  0.97
60
60
 
61
61
  References
{scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/knn.py RENAMED
@@ -55,7 +55,7 @@ class NNClassifier(BaseClassifier):
55
55
  >>> labels_true = graph.labels
56
56
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
57
57
  >>> labels_pred = classifier.fit_predict(adjacency, labels)
58
- >>> round(np.mean(labels_pred == labels_true), 2)
58
+ >>> float(round(np.mean(labels_pred == labels_true), 2))
59
59
  0.82
60
60
  """
61
61
  def __init__(self, n_neighbors: int = 3, embedding_method: Optional[BaseEmbedding] = None, normalize: bool = True):
{scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/metrics.py RENAMED
@@ -34,7 +34,7 @@ def get_accuracy_score(labels_true: np.ndarray, labels_pred: np.ndarray) -> floa
34
34
  >>> import numpy as np
35
35
  >>> labels_true = np.array([0, 0, 1, 1])
36
36
  >>> labels_pred = np.array([0, 0, 0, 1])
37
- >>> round(get_accuracy_score(labels_true, labels_pred), 2)
37
+ >>> float(round(get_accuracy_score(labels_true, labels_pred), 2))
38
38
  0.75
39
39
  """
40
40
  check_vector_format(labels_true, labels_pred)
@@ -105,7 +105,7 @@ def get_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, return_precis
105
105
  >>> import numpy as np
106
106
  >>> labels_true = np.array([0, 0, 1, 1])
107
107
  >>> labels_pred = np.array([0, 0, 0, 1])
108
- >>> round(get_f1_score(labels_true, labels_pred), 2)
108
+ >>> float(round(get_f1_score(labels_true, labels_pred), 2))
109
109
  0.67
110
110
  """
111
111
  values = set(labels_true[labels_true >= 0]) | set(labels_pred[labels_pred >= 0])
@@ -188,7 +188,7 @@ def get_average_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, avera
188
188
  >>> import numpy as np
189
189
  >>> labels_true = np.array([0, 0, 1, 1])
190
190
  >>> labels_pred = np.array([0, 0, 0, 1])
191
- >>> round(get_average_f1_score(labels_true, labels_pred), 2)
191
+ >>> float(round(get_average_f1_score(labels_true, labels_pred), 2))
192
192
  0.73
193
193
  """
194
194
  if average == 'micro':
{scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/pagerank.py RENAMED
@@ -51,7 +51,7 @@ class PageRankClassifier(RankClassifier):
51
51
  >>> labels_true = graph.labels
52
52
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
53
53
  >>> labels_pred = pagerank.fit_predict(adjacency, labels)
54
- >>> np.round(np.mean(labels_pred == labels_true), 2)
54
+ >>> float(np.round(np.mean(labels_pred == labels_true), 2))
55
55
  0.97
56
56
 
57
57
  References
{scikit-network-0.33.0 → scikit_network-0.33.3}/sknetwork/classification/propagation.py RENAMED
@@ -58,7 +58,7 @@ class Propagation(BaseClassifier):
58
58
  >>> labels_true = graph.labels
59
59
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
60
60
  >>> labels_pred = propagation.fit_predict(adjacency, labels)
61
- >>> np.round(np.mean(labels_pred == labels_true), 2)
61
+ >>> float(np.round(np.mean(labels_pred == labels_true), 2))
62
62
  0.94
63
63
 
64
64
  References