scikit-network 0.32.0__tar.gz → 0.33.1__tar.gz

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  1. {scikit-network-0.32.0 → scikit-network-0.33.1}/AUTHORS.rst +0 -1
  2. {scikit-network-0.32.0 → scikit-network-0.33.1}/HISTORY.rst +18 -1
  3. scikit-network-0.33.1/PKG-INFO +115 -0
  4. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/visualization.rst +1 -1
  5. scikit-network-0.33.1/pyproject.toml +45 -0
  6. scikit-network-0.33.1/scikit_network.egg-info/PKG-INFO +115 -0
  7. {scikit-network-0.32.0 → scikit-network-0.33.1}/scikit_network.egg-info/SOURCES.txt +1 -0
  8. scikit-network-0.33.1/scikit_network.egg-info/requires.txt +7 -0
  9. {scikit-network-0.32.0 → scikit-network-0.33.1}/setup.cfg +1 -4
  10. {scikit-network-0.32.0 → scikit-network-0.33.1}/setup.py +3 -42
  11. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/__init__.py +1 -1
  12. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/diffusion.py +4 -3
  13. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/knn.py +4 -3
  14. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/metrics.py +3 -3
  15. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/pagerank.py +1 -1
  16. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/propagation.py +7 -6
  17. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/leiden.py +2 -1
  18. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/louvain.py +6 -6
  19. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/metrics.py +1 -1
  20. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_kcenters.py +5 -37
  21. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_louvain.py +6 -0
  22. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/__init__.py +1 -1
  23. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/base.py +7 -2
  24. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/load.py +18 -21
  25. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/models.py +15 -15
  26. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/parse.py +19 -17
  27. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_API.py +3 -3
  28. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_base.py +2 -2
  29. scikit-network-0.33.1/sknetwork/data/tests/test_toy_graphs.py +68 -0
  30. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/toy_graphs.py +35 -43
  31. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/base.py +3 -0
  32. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/louvain_embedding.py +0 -26
  33. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/svd.py +0 -4
  34. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_louvain_embedding.py +9 -4
  35. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_svd.py +6 -0
  36. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/gnn_classifier.py +1 -1
  37. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/louvain_hierarchy.py +10 -6
  38. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/metrics.py +3 -3
  39. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/paris.cpp +703 -701
  40. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/paris.pyx +4 -3
  41. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/tests/test_metrics.py +4 -4
  42. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/push.cpp +69 -69
  43. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/sparse_lowrank.py +1 -1
  44. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/regression/diffusion.py +6 -4
  45. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/topology/cliques.cpp +69 -69
  46. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/topology/core.cpp +69 -69
  47. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/topology/cycles.py +1 -1
  48. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/utils/__init__.py +1 -1
  49. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/utils/values.py +5 -3
  50. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/visualization/graphs.py +1 -1
  51. scikit-network-0.32.0/PKG-INFO +0 -503
  52. scikit-network-0.32.0/scikit_network.egg-info/PKG-INFO +0 -503
  53. scikit-network-0.32.0/scikit_network.egg-info/requires.txt +0 -2
  54. scikit-network-0.32.0/sknetwork/data/tests/test_toy_graphs.py +0 -68
  55. {scikit-network-0.32.0 → scikit-network-0.33.1}/CONTRIBUTING.rst +0 -0
  56. {scikit-network-0.32.0 → scikit-network-0.33.1}/LICENSE +0 -0
  57. {scikit-network-0.32.0 → scikit-network-0.33.1}/MANIFEST.in +0 -0
  58. {scikit-network-0.32.0 → scikit-network-0.33.1}/README.rst +0 -0
  59. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/Makefile +0 -0
  60. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/authors.rst +0 -0
  61. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/conf.py +0 -0
  62. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/contributing.rst +0 -0
  63. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/first_steps.rst +0 -0
  64. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/genindex.rst +0 -0
  65. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/glossary.rst +0 -0
  66. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/history.rst +0 -0
  67. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/index.rst +0 -0
  68. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/make.bat +0 -0
  69. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/readme.rst +0 -0
  70. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/classification.rst +0 -0
  71. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/clustering.rst +0 -0
  72. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/data.rst +0 -0
  73. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/embedding.rst +0 -0
  74. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/gnn.rst +0 -0
  75. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/hierarchy.rst +0 -0
  76. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/linalg.rst +0 -0
  77. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/linkpred.rst +0 -0
  78. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/path.rst +0 -0
  79. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/ranking.rst +0 -0
  80. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/regression.rst +0 -0
  81. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/topology.rst +0 -0
  82. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/utils.rst +0 -0
  83. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/classification/index.rst +0 -0
  84. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/clustering/index.rst +0 -0
  85. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/data/index.rst +0 -0
  86. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/embedding/index.rst +0 -0
  87. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/gnn/index.rst +0 -0
  88. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/hierarchy/index.rst +0 -0
  89. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/linkpred/index.rst +0 -0
  90. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/overview/index.rst +0 -0
  91. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/path/index.rst +0 -0
  92. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/ranking/index.rst +0 -0
  93. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/regression/index.rst +0 -0
  94. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/topology/index.rst +0 -0
  95. {scikit-network-0.32.0 → scikit-network-0.33.1}/docs/tutorials/visualization/index.rst +0 -0
  96. {scikit-network-0.32.0 → scikit-network-0.33.1}/scikit_network.egg-info/dependency_links.txt +0 -0
  97. {scikit-network-0.32.0 → scikit-network-0.33.1}/scikit_network.egg-info/not-zip-safe +0 -0
  98. {scikit-network-0.32.0 → scikit-network-0.33.1}/scikit_network.egg-info/top_level.txt +0 -0
  99. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/base.py +0 -0
  100. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/__init__.py +0 -0
  101. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/base.py +0 -0
  102. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/base_rank.py +0 -0
  103. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/__init__.py +0 -0
  104. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_API.py +0 -0
  105. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_diffusion.py +0 -0
  106. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_knn.py +0 -0
  107. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_metrics.py +0 -0
  108. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_pagerank.py +0 -0
  109. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/tests/test_propagation.py +0 -0
  110. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/vote.cpp +0 -0
  111. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/vote.pyx +0 -0
  112. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/__init__.py +0 -0
  113. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/base.py +0 -0
  114. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/kcenters.py +0 -0
  115. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/leiden_core.cpp +0 -0
  116. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/leiden_core.pyx +0 -0
  117. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/louvain_core.cpp +0 -0
  118. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/louvain_core.pyx +0 -0
  119. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/postprocess.py +0 -0
  120. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/propagation_clustering.py +0 -0
  121. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/__init__.py +0 -0
  122. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_API.py +0 -0
  123. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_leiden.py +0 -0
  124. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_metrics.py +0 -0
  125. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/tests/test_postprocess.py +0 -0
  126. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/test_graphs.py +0 -0
  127. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/__init__.py +0 -0
  128. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_load.py +0 -0
  129. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_models.py +0 -0
  130. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_parse.py +0 -0
  131. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/tests/test_test_graphs.py +0 -0
  132. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/data/timeout.py +0 -0
  133. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/__init__.py +0 -0
  134. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/force_atlas.py +0 -0
  135. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/random_projection.py +0 -0
  136. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/spectral.py +0 -0
  137. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/spring.py +0 -0
  138. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/__init__.py +0 -0
  139. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_API.py +0 -0
  140. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_force_atlas.py +0 -0
  141. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_random_projection.py +0 -0
  142. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_spectral.py +0 -0
  143. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/embedding/tests/test_spring.py +0 -0
  144. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/__init__.py +0 -0
  145. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/activation.py +0 -0
  146. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/base.py +0 -0
  147. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/base_activation.py +0 -0
  148. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/base_layer.py +0 -0
  149. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/layer.py +0 -0
  150. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/loss.py +0 -0
  151. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/neighbor_sampler.py +0 -0
  152. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/optimizer.py +0 -0
  153. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/__init__.py +0 -0
  154. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_activation.py +0 -0
  155. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_base.py +0 -0
  156. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_base_layer.py +0 -0
  157. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_gnn_classifier.py +0 -0
  158. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_layers.py +0 -0
  159. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_loss.py +0 -0
  160. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_neigh_sampler.py +0 -0
  161. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_optimizer.py +0 -0
  162. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/tests/test_utils.py +0 -0
  163. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/gnn/utils.py +0 -0
  164. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/__init__.py +0 -0
  165. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/base.py +0 -0
  166. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/postprocess.py +0 -0
  167. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/tests/__init__.py +0 -0
  168. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/tests/test_API.py +0 -0
  169. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/tests/test_algos.py +0 -0
  170. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/hierarchy/tests/test_postprocess.py +0 -0
  171. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/__init__.py +0 -0
  172. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/basics.py +0 -0
  173. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/diteration.cpp +0 -0
  174. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/diteration.pyx +0 -0
  175. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/eig_solver.py +0 -0
  176. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/laplacian.py +0 -0
  177. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/normalizer.py +0 -0
  178. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/operators.py +0 -0
  179. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/polynome.py +0 -0
  180. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/ppr_solver.py +0 -0
  181. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/push.pyx +0 -0
  182. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/svd_solver.py +0 -0
  183. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/tests/__init__.py +0 -0
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  186. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/tests/test_normalization.py +0 -0
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  189. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/linalg/tests/test_ppr.py +0 -0
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  220. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/ranking/tests/test_closeness.py +0 -0
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  229. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/sknetwork.py +0 -0
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  264. {scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/visualization/colors.py +0 -0
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{scikit-network-0.32.0 → scikit-network-0.33.1}/AUTHORS.rst RENAMED
@@ -13,7 +13,6 @@ Development Lead
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  * Simon Delarue <simon.delarue@telecom-paris.fr>
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  * Marc Jeanmougin <marc.jeanmougin@telecom-paris.fr>
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15
 
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-
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  Former lead
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17
  -----------
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18
 
{scikit-network-0.32.0 → scikit-network-0.33.1}/HISTORY.rst RENAMED
@@ -2,7 +2,24 @@
2
2
  History
3
3
  =======
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4
 
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- 0.32.0 (2024-03-28)
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+ 0.33.1 (2024-09-18)
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+ -------------------
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+
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+ * Upgrade Numpy
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+
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+ 0.33.0 (2024-07-16)
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+ -------------------
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+
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+ * Add Python 3.12
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+ * Drop Python 3.8
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+
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+ 0.32.1 (2024-04-02)
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+ -------------------
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+
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+ * Fix documentation
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+ * Fix wheel upload
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+
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+ 0.32.0 (2024-03-29)
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  -------------------
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  * Add Leiden clustering algorithm
scikit-network-0.33.1/PKG-INFO ADDED
@@ -0,0 +1,115 @@
1
+ Metadata-Version: 2.1
2
+ Name: scikit-network
3
+ Version: 0.33.1
4
+ Summary: Graph algorithms
5
+ Author: Scikit-network team
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+ Maintainer-email: Thomas Bonald <bonald@enst.fr>
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+ License: BSD License
8
+ Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
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+ Project-URL: Documentation, https://scikit-network.readthedocs.io/
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+ Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
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+ Keywords: sknetwork
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+ Classifier: Development Status :: 3 - Alpha
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Intended Audience :: Information Technology
15
+ Classifier: Intended Audience :: Education
16
+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: BSD License
18
+ Classifier: Natural Language :: English
19
+ Classifier: Programming Language :: Cython
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Requires-Python: >=3.9
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+ Description-Content-Type: text/x-rst
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+ Provides-Extra: test
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+ License-File: LICENSE
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+ License-File: AUTHORS.rst
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+
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+ .. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
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+ :align: right
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+ :width: 150px
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+ :alt: logo sknetwork
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+
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+
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+
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+ .. image:: https://img.shields.io/pypi/v/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
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+ .. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
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+ :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
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+
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+ .. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
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+ :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
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+ :alt: Documentation Status
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+
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+ .. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
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+ :target: https://codecov.io/gh/sknetwork-team/scikit-network
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+
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+ .. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
53
+ Free software library in Python for machine learning on graphs:
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+
55
+ * Memory-efficient representation of graphs as sparse matrices in scipy_ format
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+ * Fast algorithms
57
+ * Simple API inspired by scikit-learn_
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+
59
+ .. _scipy: https://www.scipy.org
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+ .. _scikit-learn: https://scikit-learn.org/
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+
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+ Resources
63
+ ---------
64
+
65
+ * Free software: BSD license
66
+ * GitHub: https://github.com/sknetwork-team/scikit-network
67
+ * Documentation: https://scikit-network.readthedocs.io
68
+
69
+ Quick start
70
+ -----------
71
+
72
+ Install scikit-network:
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+
74
+ .. code-block:: console
75
+
76
+ $ pip install scikit-network
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+
78
+ Import scikit-network::
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+
80
+ import sknetwork
81
+
82
+ Overview
83
+ --------
84
+
85
+ An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
86
+
87
+ Documentation
88
+ -------------
89
+
90
+ The documentation is structured as follows:
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+
92
+ * `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
93
+ * `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
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+ * `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
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+ * `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
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+ * `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
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+
98
+ Citing
99
+ ------
100
+
101
+ If you want to cite scikit-network, please refer to the publication in
102
+ the `Journal of Machine Learning Research <https://jmlr.org>`_:
103
+
104
+ .. code::
105
+
106
+ @article{JMLR:v21:20-412,
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+ author = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
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+ title = {Scikit-network: Graph Analysis in Python},
109
+ journal = {Journal of Machine Learning Research},
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+ year = {2020},
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+ volume = {21},
112
+ number = {185},
113
+ pages = {1-6},
114
+ url = {http://jmlr.org/papers/v21/20-412.html}
115
+ }
{scikit-network-0.32.0 → scikit-network-0.33.1}/docs/reference/visualization.rst RENAMED
@@ -8,7 +8,7 @@ Visualization tools.
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8
  Graphs
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9
  ------
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10
 
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- .. autofunction:: sknetwork.visualization.graphs.svg_graph
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+ .. autofunction:: sknetwork.visualization.graphs.visualize_graph
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  .. autofunction:: sknetwork.visualization.graphs.visualize_bigraph
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scikit-network-0.33.1/pyproject.toml ADDED
@@ -0,0 +1,45 @@
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+ [build-system]
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+ requires = [
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+ "numpy",
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+ "setuptools",
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+ "scipy",
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+ "pytest-runner",
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+ "cython"
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+ ]
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+ build-backend = "setuptools.build_meta"
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+
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+
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+ [project]
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+ name = "scikit-network"
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+ version = "0.33.1"
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+ dependencies = ['numpy>=1.22.4', 'scipy>=1.7.3']
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+ authors = [{name = "Scikit-network team"}]
17
+ maintainers = [{name = "Thomas Bonald", email = "bonald@enst.fr"}]
18
+ description = "Graph algorithms"
19
+ readme = "README.rst"
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+ license = {text = "BSD License"}
21
+ keywords = ["sknetwork"]
22
+ classifiers=[
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+ 'Development Status :: 3 - Alpha',
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+ 'Intended Audience :: Developers',
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+ 'Intended Audience :: Information Technology',
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+ 'Intended Audience :: Education',
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+ 'Intended Audience :: Science/Research',
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+ 'License :: OSI Approved :: BSD License',
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+ 'Natural Language :: English',
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+ 'Programming Language :: Cython',
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+ 'Programming Language :: Python :: 3.9',
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+ 'Programming Language :: Python :: 3.10',
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+ 'Programming Language :: Python :: 3.11',
34
+ 'Programming Language :: Python :: 3.12'
35
+ ]
36
+ requires-python = ">= 3.9"
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+
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+ [project.optional-dependencies]
39
+ test = ["pytest", "note", "pluggy>=0.7.1"]
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+
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+ [project.urls]
42
+ Repository = "https://github.com/sknetwork-team/scikit-network"
43
+ Documentation = "https://scikit-network.readthedocs.io/"
44
+ Changelog = "https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst"
45
+
scikit-network-0.33.1/scikit_network.egg-info/PKG-INFO ADDED
@@ -0,0 +1,115 @@
1
+ Metadata-Version: 2.1
2
+ Name: scikit-network
3
+ Version: 0.33.1
4
+ Summary: Graph algorithms
5
+ Author: Scikit-network team
6
+ Maintainer-email: Thomas Bonald <bonald@enst.fr>
7
+ License: BSD License
8
+ Project-URL: Repository, https://github.com/sknetwork-team/scikit-network
9
+ Project-URL: Documentation, https://scikit-network.readthedocs.io/
10
+ Project-URL: Changelog, https://github.com/sknetwork-team/scikit-network/blob/master/HISTORY.rst
11
+ Keywords: sknetwork
12
+ Classifier: Development Status :: 3 - Alpha
13
+ Classifier: Intended Audience :: Developers
14
+ Classifier: Intended Audience :: Information Technology
15
+ Classifier: Intended Audience :: Education
16
+ Classifier: Intended Audience :: Science/Research
17
+ Classifier: License :: OSI Approved :: BSD License
18
+ Classifier: Natural Language :: English
19
+ Classifier: Programming Language :: Cython
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
23
+ Classifier: Programming Language :: Python :: 3.12
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+ Requires-Python: >=3.9
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+ Description-Content-Type: text/x-rst
26
+ Provides-Extra: test
27
+ License-File: LICENSE
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+ License-File: AUTHORS.rst
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+
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+ .. image:: https://perso.telecom-paristech.fr/bonald/logo_sknetwork.png
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+ :align: right
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+ :width: 150px
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+ :alt: logo sknetwork
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+
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+
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+
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+ .. image:: https://img.shields.io/pypi/v/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
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+ .. image:: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml/badge.svg
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+ :target: https://github.com/sknetwork-team/scikit-network/actions/workflows/ci_checks.yml
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+
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+ .. image:: https://readthedocs.org/projects/scikit-network/badge/?version=latest
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+ :target: https://scikit-network.readthedocs.io/en/latest/?badge=latest
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+ :alt: Documentation Status
46
+
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+ .. image:: https://codecov.io/gh/sknetwork-team/scikit-network/branch/master/graph/badge.svg
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+ :target: https://codecov.io/gh/sknetwork-team/scikit-network
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+
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+ .. image:: https://img.shields.io/pypi/pyversions/scikit-network.svg
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+ :target: https://pypi.python.org/pypi/scikit-network
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+
53
+ Free software library in Python for machine learning on graphs:
54
+
55
+ * Memory-efficient representation of graphs as sparse matrices in scipy_ format
56
+ * Fast algorithms
57
+ * Simple API inspired by scikit-learn_
58
+
59
+ .. _scipy: https://www.scipy.org
60
+ .. _scikit-learn: https://scikit-learn.org/
61
+
62
+ Resources
63
+ ---------
64
+
65
+ * Free software: BSD license
66
+ * GitHub: https://github.com/sknetwork-team/scikit-network
67
+ * Documentation: https://scikit-network.readthedocs.io
68
+
69
+ Quick start
70
+ -----------
71
+
72
+ Install scikit-network:
73
+
74
+ .. code-block:: console
75
+
76
+ $ pip install scikit-network
77
+
78
+ Import scikit-network::
79
+
80
+ import sknetwork
81
+
82
+ Overview
83
+ --------
84
+
85
+ An overview of the package is presented in this `notebook <https://scikit-network.readthedocs.io/en/latest/tutorials/overview/index.html>`_.
86
+
87
+ Documentation
88
+ -------------
89
+
90
+ The documentation is structured as follows:
91
+
92
+ * `Getting started <https://scikit-network.readthedocs.io/en/latest/first_steps.html>`_: First steps to install, import and use scikit-network.
93
+ * `User manual <https://scikit-network.readthedocs.io/en/latest/reference/data.html>`_: Description of each function and object of scikit-network.
94
+ * `Tutorials <https://scikit-network.readthedocs.io/en/latest/tutorials/data/index.html>`_: Application of the main tools to toy examples.
95
+ * `Examples <https://scikit-network.readthedocs.io/en/latest/use_cases/text.html>`_: Examples combining several tools on specific use cases.
96
+ * `About <https://scikit-network.readthedocs.io/en/latest/authors.html>`_: Authors, history of the library, how to contribute, index of functions and objects.
97
+
98
+ Citing
99
+ ------
100
+
101
+ If you want to cite scikit-network, please refer to the publication in
102
+ the `Journal of Machine Learning Research <https://jmlr.org>`_:
103
+
104
+ .. code::
105
+
106
+ @article{JMLR:v21:20-412,
107
+ author = {Thomas Bonald and Nathan de Lara and Quentin Lutz and Bertrand Charpentier},
108
+ title = {Scikit-network: Graph Analysis in Python},
109
+ journal = {Journal of Machine Learning Research},
110
+ year = {2020},
111
+ volume = {21},
112
+ number = {185},
113
+ pages = {1-6},
114
+ url = {http://jmlr.org/papers/v21/20-412.html}
115
+ }
{scikit-network-0.32.0 → scikit-network-0.33.1}/scikit_network.egg-info/SOURCES.txt RENAMED
@@ -4,6 +4,7 @@ HISTORY.rst
4
4
  LICENSE
5
5
  MANIFEST.in
6
6
  README.rst
7
+ pyproject.toml
7
8
  setup.cfg
8
9
  setup.py
9
10
  ./sknetwork/classification/vote.cpp
scikit-network-0.33.1/scikit_network.egg-info/requires.txt ADDED
@@ -0,0 +1,7 @@
1
+ numpy>=1.22.4
2
+ scipy>=1.7.3
3
+
4
+ [test]
5
+ pytest
6
+ note
7
+ pluggy>=0.7.1
{scikit-network-0.32.0 → scikit-network-0.33.1}/setup.cfg RENAMED
@@ -1,5 +1,5 @@
1
1
  [bumpversion]
2
- current_version = 0.32.0
2
+ current_version = 0.33.1python setup.py sdist
3
3
  commit = True
4
4
  tag = True
5
5
 
@@ -20,9 +20,6 @@ test = pytest
20
20
  [tool:pytest]
21
21
  collect_ignore = ['setup.py']
22
22
 
23
- [options]
24
- python_requires = >=3.8
25
-
26
23
  [egg_info]
27
24
  tag_build =
28
25
  tag_date = 0
{scikit-network-0.32.0 → scikit-network-0.33.1}/setup.py RENAMED
@@ -2,25 +2,15 @@
2
2
  # -*- coding: utf-8 -*-
3
3
  """Setup script."""
4
4
 
5
+ import numpy
5
6
 
6
7
  from setuptools import find_packages, setup, Extension
7
8
  from sysconfig import get_platform
8
9
  from distutils.command.build_ext import build_ext
9
10
  import os
11
+ import builtins
10
12
  from glob import glob
11
13
 
12
- import numpy
13
-
14
- with open('README.rst') as readme_file:
15
- readme = readme_file.read()
16
-
17
- with open('HISTORY.rst') as history_file:
18
- history = history_file.read()
19
-
20
- requirements = ['numpy>=1.22.4', 'scipy>=1.7.3']
21
-
22
- setup_requirements = ['pytest-runner']
23
-
24
14
  test_requirements = ['pytest', 'nose', 'pluggy>=0.7.1']
25
15
 
26
16
  # if any problems occur with macOS' clang not knowing the -fopenmp flag, see:
@@ -55,7 +45,6 @@ if platform.startswith("win"):
55
45
  EXTRA_COMPILE_ARGS = ['/d2FH4-']
56
46
  EXTRA_LINK_ARGS = []
57
47
 
58
-
59
48
  class BuildExtSubclass(build_ext):
60
49
  def build_options(self):
61
50
  for e in self.extensions:
@@ -74,8 +63,7 @@ class BuildExtSubclass(build_ext):
74
63
  def finalize_options(self):
75
64
  build_ext.finalize_options(self)
76
65
  # Prevent numpy from thinking it is still in its setup process:
77
- __builtins__.__NUMPY_SETUP__ = False
78
- import numpy
66
+ builtins.__NUMPY_SETUP__ = False
79
67
  self.include_dirs.append(numpy.get_include())
80
68
 
81
69
 
@@ -124,36 +112,9 @@ else:
124
112
 
125
113
 
126
114
  setup(
127
- author="Scikit-network team",
128
- author_email='bonald@enst.fr',
129
- classifiers=[
130
- 'Development Status :: 3 - Alpha',
131
- 'Intended Audience :: Developers',
132
- 'Intended Audience :: Information Technology',
133
- 'Intended Audience :: Education',
134
- 'Intended Audience :: Science/Research',
135
- 'License :: OSI Approved :: BSD License',
136
- 'Natural Language :: English',
137
- 'Programming Language :: Cython',
138
- 'Programming Language :: Python :: 3.8',
139
- 'Programming Language :: Python :: 3.9',
140
- 'Programming Language :: Python :: 3.10',
141
- 'Programming Language :: Python :: 3.11'
142
- ],
143
- description="Graph algorithms",
144
- install_requires=requirements,
145
- license="BSD license",
146
- long_description=readme + '\n\n' + history,
147
- long_description_content_type='text/x-rst',
148
- include_package_data=True,
149
- keywords='sknetwork',
150
- name='scikit-network',
151
115
  packages=find_packages(),
152
- setup_requires=setup_requirements,
153
116
  test_suite='tests',
154
117
  tests_require=test_requirements,
155
- url='https://github.com/sknetwork-team/scikit-network',
156
- version='0.32.0',
157
118
  zip_safe=False,
158
119
  ext_modules=ext_modules,
159
120
  include_dirs=[numpy.get_include()],
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/__init__.py RENAMED
@@ -4,7 +4,7 @@
4
4
 
5
5
  __author__ = """scikit-network team"""
6
6
  __email__ = "thomas.bonald@telecom-paris.fr"
7
- __version__ = '0.32.0'
7
+ __version__ = '0.33.0'
8
8
 
9
9
  import sknetwork.topology
10
10
  import sknetwork.path
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/diffusion.py RENAMED
@@ -55,7 +55,7 @@ class DiffusionClassifier(BaseClassifier):
55
55
  >>> labels_true = graph.labels
56
56
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
57
57
  >>> labels_pred = diffusion.fit_predict(adjacency, labels)
58
- >>> np.round(np.mean(labels_pred == labels_true), 2)
58
+ >>> float(round(np.mean(labels_pred == labels_true), 2))
59
59
  0.97
60
60
 
61
61
  References
@@ -74,8 +74,9 @@ class DiffusionClassifier(BaseClassifier):
74
74
  self.scale = scale
75
75
 
76
76
  def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray],
77
- labels: Optional[Union[dict, np.ndarray]] = None, labels_row: Optional[Union[dict, np.ndarray]] = None,
78
- labels_col: Optional[Union[dict, np.ndarray]] = None, force_bipartite: bool = False) \
77
+ labels: Optional[Union[dict, list, np.ndarray]] = None,
78
+ labels_row: Optional[Union[dict, list, np.ndarray]] = None,
79
+ labels_col: Optional[Union[dict, list, np.ndarray]] = None, force_bipartite: bool = False) \
79
80
  -> 'DiffusionClassifier':
80
81
  """Compute the solution to the Dirichlet problem (temperatures at equilibrium).
81
82
 
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/knn.py RENAMED
@@ -55,7 +55,7 @@ class NNClassifier(BaseClassifier):
55
55
  >>> labels_true = graph.labels
56
56
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
57
57
  >>> labels_pred = classifier.fit_predict(adjacency, labels)
58
- >>> np.round(np.mean(labels_pred == labels_true), 2)
58
+ >>> float(round(np.mean(labels_pred == labels_true), 2))
59
59
  0.82
60
60
  """
61
61
  def __init__(self, n_neighbors: int = 3, embedding_method: Optional[BaseEmbedding] = None, normalize: bool = True):
@@ -97,8 +97,9 @@ class NNClassifier(BaseClassifier):
97
97
 
98
98
  return probs, labels
99
99
 
100
- def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], labels: Union[np.ndarray, dict] = None,
101
- labels_row: Union[np.ndarray, dict] = None, labels_col: Union[np.ndarray, dict] = None) -> 'NNClassifier':
100
+ def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], labels: Union[np.ndarray, list, dict] = None,
101
+ labels_row: Union[np.ndarray, list, dict] = None,
102
+ labels_col: Union[np.ndarray, list, dict] = None) -> 'NNClassifier':
102
103
  """Node classification by k-nearest neighbors in the embedding space.
103
104
 
104
105
  Parameters
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/metrics.py RENAMED
@@ -34,7 +34,7 @@ def get_accuracy_score(labels_true: np.ndarray, labels_pred: np.ndarray) -> floa
34
34
  >>> import numpy as np
35
35
  >>> labels_true = np.array([0, 0, 1, 1])
36
36
  >>> labels_pred = np.array([0, 0, 0, 1])
37
- >>> get_accuracy_score(labels_true, labels_pred)
37
+ >>> float(round(get_accuracy_score(labels_true, labels_pred), 2))
38
38
  0.75
39
39
  """
40
40
  check_vector_format(labels_true, labels_pred)
@@ -105,7 +105,7 @@ def get_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, return_precis
105
105
  >>> import numpy as np
106
106
  >>> labels_true = np.array([0, 0, 1, 1])
107
107
  >>> labels_pred = np.array([0, 0, 0, 1])
108
- >>> np.round(get_f1_score(labels_true, labels_pred), 2)
108
+ >>> float(round(get_f1_score(labels_true, labels_pred), 2))
109
109
  0.67
110
110
  """
111
111
  values = set(labels_true[labels_true >= 0]) | set(labels_pred[labels_pred >= 0])
@@ -188,7 +188,7 @@ def get_average_f1_score(labels_true: np.ndarray, labels_pred: np.ndarray, avera
188
188
  >>> import numpy as np
189
189
  >>> labels_true = np.array([0, 0, 1, 1])
190
190
  >>> labels_pred = np.array([0, 0, 0, 1])
191
- >>> np.round(get_average_f1_score(labels_true, labels_pred), 2)
191
+ >>> float(round(get_average_f1_score(labels_true, labels_pred), 2))
192
192
  0.73
193
193
  """
194
194
  if average == 'micro':
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/pagerank.py RENAMED
@@ -51,7 +51,7 @@ class PageRankClassifier(RankClassifier):
51
51
  >>> labels_true = graph.labels
52
52
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
53
53
  >>> labels_pred = pagerank.fit_predict(adjacency, labels)
54
- >>> np.round(np.mean(labels_pred == labels_true), 2)
54
+ >>> float(np.round(np.mean(labels_pred == labels_true), 2))
55
55
  0.97
56
56
 
57
57
  References
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/classification/propagation.py RENAMED
@@ -58,7 +58,7 @@ class Propagation(BaseClassifier):
58
58
  >>> labels_true = graph.labels
59
59
  >>> labels = {0: labels_true[0], 33: labels_true[33]}
60
60
  >>> labels_pred = propagation.fit_predict(adjacency, labels)
61
- >>> np.round(np.mean(labels_pred == labels_true), 2)
61
+ >>> float(np.round(np.mean(labels_pred == labels_true), 2))
62
62
  0.94
63
63
 
64
64
  References
@@ -91,19 +91,20 @@ class Propagation(BaseClassifier):
91
91
  labels = labels[index_seed]
92
92
  return index_seed.astype(np.int32), index_remain.astype(np.int32), labels.astype(np.int32)
93
93
 
94
- def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], labels: Union[np.ndarray, dict] = None,
95
- labels_row: Union[np.ndarray, dict] = None, labels_col: Union[np.ndarray, dict] = None) -> 'Propagation':
94
+ def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], labels: Union[np.ndarray, list, dict] = None,
95
+ labels_row: Union[np.ndarray, list, dict] = None,
96
+ labels_col: Union[np.ndarray, list, dict] = None) -> 'Propagation':
96
97
  """Node classification by label propagation.
97
98
 
98
99
  Parameters
99
100
  ----------
100
101
  input_matrix : sparse.csr_matrix, np.ndarray
101
102
  Adjacency matrix or biadjacency matrix of the graph.
102
- labels : np.ndarray, dict
103
+ labels : array, list or dict
103
104
  Known labels. Negative values ignored.
104
- labels_row : np.ndarray, dict
105
+ labels_row : array, list or dict
105
106
  Known labels of rows, for bipartite graphs.
106
- labels_col : np.ndarray, dict
107
+ labels_col : array, list or dict
107
108
  Known labels of columns, for bipartite graphs.
108
109
 
109
110
  Returns
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/leiden.py RENAMED
@@ -76,7 +76,8 @@ class Leiden(Louvain):
76
76
  References
77
77
  ----------
78
78
  * Traag, V. A., Waltman, L., & Van Eck, N. J. (2019).
79
- `From Louvain to Leiden: guaranteeing well-connected communities`, Scientific reports.
79
+ `From Louvain to Leiden: guaranteeing well-connected communities`, Scientific reports.
80
+
80
81
  """
81
82
 
82
83
  def __init__(self, resolution: float = 1, modularity: str = 'dugue', tol_optimization: float = 1e-3,
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/louvain.py RENAMED
@@ -14,8 +14,8 @@ from scipy import sparse
14
14
  from sknetwork.clustering.base import BaseClustering
15
15
  from sknetwork.clustering.louvain_core import optimize_core
16
16
  from sknetwork.clustering.postprocess import reindex_labels
17
- from sknetwork.utils.check import check_random_state, get_probs
18
- from sknetwork.utils.format import check_format, get_adjacency, directed2undirected
17
+ from sknetwork.utils.check import check_format, check_random_state, get_probs
18
+ from sknetwork.utils.format import get_adjacency, directed2undirected
19
19
  from sknetwork.utils.membership import get_membership
20
20
  from sknetwork.log import Log
21
21
 
@@ -131,9 +131,9 @@ class Louvain(BaseClustering, Log):
131
131
  increase :
132
132
  Gain in modularity after optimization.
133
133
  """
134
- labels = labels.astype(np.int32)
135
- indices = adjacency.indices
136
- indptr = adjacency.indptr
134
+ labels = labels.astype(np.int64)
135
+ indices = adjacency.indices.astype(np.int64)
136
+ indptr = adjacency.indptr.astype(np.int64)
137
137
  data = adjacency.data.astype(np.float32)
138
138
  out_weights = out_weights.astype(np.float32)
139
139
  in_weights = in_weights.astype(np.float32)
@@ -193,7 +193,6 @@ class Louvain(BaseClustering, Log):
193
193
  self._init_vars()
194
194
 
195
195
  # adjacency matrix
196
- input_matrix = check_format(input_matrix)
197
196
  force_directed = self.modularity == 'dugue'
198
197
  adjacency, self.bipartite = get_adjacency(input_matrix, force_directed=force_directed,
199
198
  force_bipartite=force_bipartite)
@@ -266,6 +265,7 @@ class Louvain(BaseClustering, Log):
266
265
  -------
267
266
  self : :class:`Louvain`
268
267
  """
268
+ input_matrix = check_format(input_matrix)
269
269
  adjacency, out_weights, in_weights, membership, index = self._pre_processing(input_matrix, force_bipartite)
270
270
  n = adjacency.shape[0]
271
271
  count = 0
{scikit-network-0.32.0 → scikit-network-0.33.1}/sknetwork/clustering/metrics.py RENAMED
@@ -64,7 +64,7 @@ def get_modularity(input_matrix: Union[sparse.csr_matrix, np.ndarray], labels: n
64
64
  >>> from sknetwork.data import house
65
65
  >>> adjacency = house()
66
66
  >>> labels = np.array([0, 0, 1, 1, 0])
67
- >>> np.round(get_modularity(adjacency, labels), 2)
67
+ >>> float(np.round(get_modularity(adjacency, labels), 2))
68
68
  0.11
69
69
  """
70
70
  adjacency, bipartite = get_adjacency(input_matrix.astype(float))