scikit-lexicographical-trees 0.0.1__tar.gz

scikit_lexicographical_trees-0.0.1/CODE_OF_CONDUCT.md

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+# Code of Conduct
+
+We are a community based on openness, as well as friendly and didactic discussions.
+
+We aspire to treat everybody equally, and value their contributions.
+
+Decisions are made based on technical merit and consensus.
+
+Code is not the only way to help the project. Reviewing pull requests,
+answering questions to help others on mailing lists or issues, organizing and
+teaching tutorials, working on the website, improving the documentation, are
+all priceless contributions.
+
+We abide by the principles of openness, respect, and consideration of others of
+the Python Software Foundation: https://www.python.org/psf/codeofconduct/
+

scikit_lexicographical_trees-0.0.1/CONTRIBUTING.md

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+
+Contributing to scikit-learn
+============================
+
+The latest contributing guide is available in the repository at
+`doc/developers/contributing.rst`, or online at:
+
+https://scikit-learn.org/dev/developers/contributing.html
+
+There are many ways to contribute to scikit-learn, with the most common ones
+being contribution of code or documentation to the project. Improving the
+documentation is no less important than improving the library itself. If you
+find a typo in the documentation, or have made improvements, do not hesitate to
+send an email to the mailing list or preferably submit a GitHub pull request.
+Documentation can be found under the
+[doc/](https://github.com/scikit-learn/scikit-learn/tree/main/doc) directory.
+
+But there are many other ways to help. In particular answering queries on the
+[issue tracker](https://github.com/scikit-learn/scikit-learn/issues),
+investigating bugs, and [reviewing other developers' pull
+requests](https://scikit-learn.org/dev/developers/contributing.html#code-review-guidelines)
+are very valuable contributions that decrease the burden on the project
+maintainers.
+
+Another way to contribute is to report issues you're facing, and give a "thumbs
+up" on issues that others reported and that are relevant to you. It also helps
+us if you spread the word: reference the project from your blog and articles,
+link to it from your website, or simply star it in GitHub to say "I use it".
+
+Quick links
+-----------
+
+* [Submitting a bug report or feature request](https://scikit-learn.org/dev/developers/contributing.html#submitting-a-bug-report-or-a-feature-request)
+* [Contributing code](https://scikit-learn.org/dev/developers/contributing.html#contributing-code)
+* [Coding guidelines](https://scikit-learn.org/dev/developers/develop.html#coding-guidelines)
+* [Tips to read current code](https://scikit-learn.org/dev/developers/contributing.html#reading-the-existing-code-base)
+
+Code of Conduct
+---------------
+
+We abide by the principles of openness, respect, and consideration of others
+of the Python Software Foundation: https://www.python.org/psf/codeofconduct/.

scikit_lexicographical_trees-0.0.1/COPYING

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+BSD 3-Clause License
+
+Copyright (c) 2007-2024 The scikit-learn developers.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

scikit_lexicographical_trees-0.0.1/MANIFEST.in

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+include *.rst
+include *.build
+recursive-include sklearn *.build
+recursive-include doc *
+recursive-include examples *
+recursive-include sklearn *.c *.cpp *.h *.pyx *.pxd *.pxi *.tp
+recursive-include sklearn/datasets *.csv *.csv.gz *.rst *.jpg *.txt *.arff.gz *.json.gz
+include COPYING
+include README.rst
+include pyproject.toml
+include sklearn/externals/README
+include sklearn/svm/src/liblinear/COPYRIGHT
+include sklearn/svm/src/libsvm/LIBSVM_CHANGES
+include conftest.py
+include Makefile
+include MANIFEST.in
+include .coveragerc
+
+# exclude from sdist
+recursive-exclude asv_benchmarks *
+recursive-exclude benchmarks *
+recursive-exclude build_tools *
+recursive-exclude maint_tools *
+recursive-exclude benchmarks *
+recursive-exclude .binder *
+recursive-exclude .circleci *
+exclude .cirrus.star
+exclude .codecov.yml
+exclude .git-blame-ignore-revs
+exclude .mailmap
+exclude .pre-commit-config.yaml
+exclude azure-pipelines.yml
+exclude CODE_OF_CONDUCT.md
+exclude CONTRIBUTING.md
+exclude SECURITY.md
+exclude PULL_REQUEST_TEMPLATE.md

scikit_lexicographical_trees-0.0.1/Makefile

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+# simple makefile to simplify repetitive build env management tasks under posix
+
+# caution: testing won't work on windows, see README
+
+PYTHON ?= python
+CYTHON ?= cython
+PYTEST ?= pytest
+
+# skip doctests on 32bit python
+BITS := $(shell python -c 'import struct; print(8 * struct.calcsize("P"))')
+
+all: clean inplace test
+
+clean:
+	$(PYTHON) setup.py clean
+	rm -rf dist
+
+in: inplace # just a shortcut
+inplace:
+	$(PYTHON) setup.py build_ext -i
+
+dev-meson:
+	pip install --verbose --no-build-isolation --editable . --check-build-dependencies --config-settings editable-verbose=true
+
+clean-meson:
+	pip uninstall -y scikit-learn
+
+test-code: in
+	$(PYTEST) --showlocals -v sklearn --durations=20
+test-sphinxext:
+	$(PYTEST) --showlocals -v doc/sphinxext/
+test-doc:
+ifeq ($(BITS),64)
+	$(PYTEST) $(shell find doc -name '*.rst' | sort)
+endif
+test-code-parallel: in
+	$(PYTEST) -n auto --showlocals -v sklearn --durations=20
+
+test-coverage:
+	rm -rf coverage .coverage
+	$(PYTEST) sklearn --showlocals -v --cov=sklearn --cov-report=html:coverage
+test-coverage-parallel:
+	rm -rf coverage .coverage .coverage.*
+	$(PYTEST) sklearn -n auto --showlocals -v --cov=sklearn --cov-report=html:coverage
+
+test: test-code test-sphinxext test-doc
+
+cython:
+	python setup.py build_src
+
+doc: inplace
+	$(MAKE) -C doc html
+
+doc-noplot: inplace
+	$(MAKE) -C doc html-noplot

scikit_lexicographical_trees-0.0.1/PKG-INFO

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+Metadata-Version: 2.1
+Name: scikit-lexicographical-trees
+Version: 0.0.1
+Summary: A set of python modules for machine learning and data mining
+Home-page: https://scikit-learn.org
+Maintainer-Email: scikit-longitudinal-developpers <simon.gilbert.provost@gmail.com>
+License: new BSD
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Programming Language :: C
+Classifier: Programming Language :: Python
+Classifier: Topic :: Software Development
+Classifier: Topic :: Scientific/Engineering
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: Unix
+Classifier: Operating System :: MacOS
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Project-URL: Homepage, https://scikit-learn.org
+Project-URL: Source, https://github.com/scikit-learn/scikit-learn
+Project-URL: Download, https://pypi.org/project/scikit-learn/#files
+Project-URL: Tracker, https://github.com/scikit-learn/scikit-learn/issues
+Project-URL: Release notes, https://scikit-learn.org/stable/whats_new
+Requires-Python: >=3.9
+Requires-Dist: numpy>=1.19.5
+Requires-Dist: scipy>=1.6.0
+Requires-Dist: joblib>=1.2.0
+Requires-Dist: threadpoolctl>=3.1.0
+Requires-Dist: numpy>=1.19.5; extra == "build"
+Requires-Dist: scipy>=1.6.0; extra == "build"
+Requires-Dist: cython>=3.0.10; extra == "build"
+Requires-Dist: meson-python>=0.16.0; extra == "build"
+Requires-Dist: numpy>=1.19.5; extra == "install"
+Requires-Dist: scipy>=1.6.0; extra == "install"
+Requires-Dist: joblib>=1.2.0; extra == "install"
+Requires-Dist: threadpoolctl>=3.1.0; extra == "install"
+Requires-Dist: matplotlib>=3.3.4; extra == "benchmark"
+Requires-Dist: pandas>=1.1.5; extra == "benchmark"
+Requires-Dist: memory_profiler>=0.57.0; extra == "benchmark"
+Requires-Dist: matplotlib>=3.3.4; extra == "docs"
+Requires-Dist: scikit-image>=0.17.2; extra == "docs"
+Requires-Dist: pandas>=1.1.5; extra == "docs"
+Requires-Dist: seaborn>=0.9.0; extra == "docs"
+Requires-Dist: memory_profiler>=0.57.0; extra == "docs"
+Requires-Dist: sphinx>=7.3.7; extra == "docs"
+Requires-Dist: sphinx-copybutton>=0.5.2; extra == "docs"
+Requires-Dist: sphinx-gallery>=0.16.0; extra == "docs"
+Requires-Dist: numpydoc>=1.2.0; extra == "docs"
+Requires-Dist: Pillow>=7.1.2; extra == "docs"
+Requires-Dist: pooch>=1.6.0; extra == "docs"
+Requires-Dist: sphinx-prompt>=1.4.0; extra == "docs"
+Requires-Dist: sphinxext-opengraph>=0.9.1; extra == "docs"
+Requires-Dist: plotly>=5.14.0; extra == "docs"
+Requires-Dist: polars>=0.20.23; extra == "docs"
+Requires-Dist: sphinx-design>=0.5.0; extra == "docs"
+Requires-Dist: sphinxcontrib-sass>=0.3.4; extra == "docs"
+Requires-Dist: pydata-sphinx-theme>=0.15.3; extra == "docs"
+Requires-Dist: sphinx-remove-toctrees>=1.0.0.post1; extra == "docs"
+Requires-Dist: matplotlib>=3.3.4; extra == "examples"
+Requires-Dist: scikit-image>=0.17.2; extra == "examples"
+Requires-Dist: pandas>=1.1.5; extra == "examples"
+Requires-Dist: seaborn>=0.9.0; extra == "examples"
+Requires-Dist: pooch>=1.6.0; extra == "examples"
+Requires-Dist: plotly>=5.14.0; extra == "examples"
+Requires-Dist: matplotlib>=3.3.4; extra == "tests"
+Requires-Dist: scikit-image>=0.17.2; extra == "tests"
+Requires-Dist: pandas>=1.1.5; extra == "tests"
+Requires-Dist: pytest>=7.1.2; extra == "tests"
+Requires-Dist: pytest-cov>=2.9.0; extra == "tests"
+Requires-Dist: ruff>=0.2.1; extra == "tests"
+Requires-Dist: black>=24.3.0; extra == "tests"
+Requires-Dist: mypy>=1.9; extra == "tests"
+Requires-Dist: pyamg>=4.0.0; extra == "tests"
+Requires-Dist: polars>=0.20.23; extra == "tests"
+Requires-Dist: pyarrow>=12.0.0; extra == "tests"
+Requires-Dist: numpydoc>=1.2.0; extra == "tests"
+Requires-Dist: pooch>=1.6.0; extra == "tests"
+Requires-Dist: conda-lock==2.5.6; extra == "maintenance"
+Provides-Extra: build
+Provides-Extra: install
+Provides-Extra: benchmark
+Provides-Extra: docs
+Provides-Extra: examples
+Provides-Extra: tests
+Provides-Extra: maintenance
+Description-Content-Type: text/x-rst
+
+.. -*- mode: rst -*-
+
+|Azure| |CirrusCI| |Codecov| |CircleCI| |Nightly wheels| |Black| |PythonVersion| |PyPi| |DOI| |Benchmark|
+
+.. |Azure| image:: https://dev.azure.com/scikit-learn/scikit-learn/_apis/build/status/scikit-learn.scikit-learn?branchName=main
+   :target: https://dev.azure.com/scikit-learn/scikit-learn/_build/latest?definitionId=1&branchName=main
+
+.. |CircleCI| image:: https://circleci.com/gh/scikit-learn/scikit-learn/tree/main.svg?style=shield
+   :target: https://circleci.com/gh/scikit-learn/scikit-learn
+
+.. |CirrusCI| image:: https://img.shields.io/cirrus/github/scikit-learn/scikit-learn/main?label=Cirrus%20CI
+   :target: https://cirrus-ci.com/github/scikit-learn/scikit-learn/main
+
+.. |Codecov| image:: https://codecov.io/gh/scikit-learn/scikit-learn/branch/main/graph/badge.svg?token=Pk8G9gg3y9
+   :target: https://codecov.io/gh/scikit-learn/scikit-learn
+
+.. |Nightly wheels| image:: https://github.com/scikit-learn/scikit-learn/workflows/Wheel%20builder/badge.svg?event=schedule
+   :target: https://github.com/scikit-learn/scikit-learn/actions?query=workflow%3A%22Wheel+builder%22+event%3Aschedule
+
+.. |PythonVersion| image:: https://img.shields.io/pypi/pyversions/scikit-learn.svg
+   :target: https://pypi.org/project/scikit-learn/
+
+.. |PyPi| image:: https://img.shields.io/pypi/v/scikit-learn
+   :target: https://pypi.org/project/scikit-learn
+
+.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
+   :target: https://github.com/psf/black
+
+.. |DOI| image:: https://zenodo.org/badge/21369/scikit-learn/scikit-learn.svg
+   :target: https://zenodo.org/badge/latestdoi/21369/scikit-learn/scikit-learn
+
+.. |Benchmark| image:: https://img.shields.io/badge/Benchmarked%20by-asv-blue
+   :target: https://scikit-learn.org/scikit-learn-benchmarks
+
+.. |PythonMinVersion| replace:: 3.9
+.. |NumPyMinVersion| replace:: 1.19.5
+.. |SciPyMinVersion| replace:: 1.6.0
+.. |JoblibMinVersion| replace:: 1.2.0
+.. |ThreadpoolctlMinVersion| replace:: 3.1.0
+.. |MatplotlibMinVersion| replace:: 3.3.4
+.. |Scikit-ImageMinVersion| replace:: 0.17.2
+.. |PandasMinVersion| replace:: 1.1.5
+.. |SeabornMinVersion| replace:: 0.9.0
+.. |PytestMinVersion| replace:: 7.1.2
+.. |PlotlyMinVersion| replace:: 5.14.0
+
+.. image:: https://raw.githubusercontent.com/scikit-learn/scikit-learn/main/doc/logos/scikit-learn-logo.png
+  :target: https://scikit-learn.org/
+
+**scikit-learn** is a Python module for machine learning built on top of
+SciPy and is distributed under the 3-Clause BSD license.
+
+The project was started in 2007 by David Cournapeau as a Google Summer
+of Code project, and since then many volunteers have contributed. See
+the `About us <https://scikit-learn.org/dev/about.html#authors>`__ page
+for a list of core contributors.
+
+It is currently maintained by a team of volunteers.
+
+⚠️️⚠️️⚠️️⚠️️
+
+**Scikit-lexicographical-trees** is an adaptation of the Scikit-Learn trees module to support Lexicographical approaches
+for Longitudinal data. Refer to the following document for furhter information: https://simonprovost.github.io/scikit-longitudinal/API/estimators/trees/lexico_decision_tree_classifier/
+
+The rest of the library stays the same as the original Scikit-Learn library. Furthermore, the readme file is the same as the original Scikit-Learn library.
+
+Nonetheless, this current fork is from NeuroData. An initiative that opened the way to enhance trees / forest in Scikit-Learn.
+
+Our thanks go to the original Scikit-Learn team for their amazing work as well as to the NeuroData team for their contributions.
+
+Refer to the Scikit-Longitudinal that is incorporating this fork: https://simonprovost.github.io/scikit-longitudinal
+
+Lastly, to access the latest wheel of Scikit-lexicographical-trees: https://nightly.link/simonprovost/scikit-lexicographical-trees/actions/runs/9760317868
+
+⚠️️⚠️️⚠️️⚠️️⚠️️️
+
+Website: https://scikit-learn.org
+
+Installation
+------------
+
+Dependencies
+~~~~~~~~~~~~
+
+scikit-learn requires:
+
+- Python (>= |PythonMinVersion|)
+- NumPy (>= |NumPyMinVersion|)
+- SciPy (>= |SciPyMinVersion|)
+- joblib (>= |JoblibMinVersion|)
+- threadpoolctl (>= |ThreadpoolctlMinVersion|)
+
+=======
+
+**Scikit-learn 0.20 was the last version to support Python 2.7 and Python 3.4.**
+scikit-learn 1.0 and later require Python 3.7 or newer.
+scikit-learn 1.1 and later require Python 3.8 or newer.
+
+Scikit-learn plotting capabilities (i.e., functions start with ``plot_`` and
+classes end with ``Display``) require Matplotlib (>= |MatplotlibMinVersion|).
+For running the examples Matplotlib >= |MatplotlibMinVersion| is required.
+A few examples require scikit-image >= |Scikit-ImageMinVersion|, a few examples
+require pandas >= |PandasMinVersion|, some examples require seaborn >=
+|SeabornMinVersion| and plotly >= |PlotlyMinVersion|.
+
+User installation
+~~~~~~~~~~~~~~~~~
+
+If you already have a working installation of NumPy and SciPy,
+the easiest way to install scikit-learn is using ``pip``::
+
+    pip install -U scikit-learn
+
+or ``conda``::
+
+    conda install -c conda-forge scikit-learn
+
+The documentation includes more detailed `installation instructions <https://scikit-learn.org/stable/install.html>`_.
+
+
+Changelog
+---------
+
+See the `changelog <https://scikit-learn.org/dev/whats_new.html>`__
+for a history of notable changes to scikit-learn.
+
+Development
+-----------
+
+We welcome new contributors of all experience levels. The scikit-learn
+community goals are to be helpful, welcoming, and effective. The
+`Development Guide <https://scikit-learn.org/stable/developers/index.html>`_
+has detailed information about contributing code, documentation, tests, and
+more. We've included some basic information in this README.
+
+Important links
+~~~~~~~~~~~~~~~
+
+- Official source code repo: https://github.com/scikit-learn/scikit-learn
+- Download releases: https://pypi.org/project/scikit-learn/
+- Issue tracker: https://github.com/scikit-learn/scikit-learn/issues
+
+Source code
+~~~~~~~~~~~
+
+You can check the latest sources with the command::
+
+    git clone https://github.com/scikit-learn/scikit-learn.git
+
+Contributing
+~~~~~~~~~~~~
+
+To learn more about making a contribution to scikit-learn, please see our
+`Contributing guide
+<https://scikit-learn.org/dev/developers/contributing.html>`_.
+
+Testing
+~~~~~~~
+
+After installation, you can launch the test suite from outside the source
+directory (you will need to have ``pytest`` >= |PyTestMinVersion| installed)::
+
+    pytest sklearn
+
+See the web page https://scikit-learn.org/dev/developers/contributing.html#testing-and-improving-test-coverage
+for more information.
+
+    Random number generation can be controlled during testing by setting
+    the ``SKLEARN_SEED`` environment variable.
+
+Submitting a Pull Request
+~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Before opening a Pull Request, have a look at the
+full Contributing page to make sure your code complies
+with our guidelines: https://scikit-learn.org/stable/developers/index.html
+
+Project History
+---------------
+
+The project was started in 2007 by David Cournapeau as a Google Summer
+of Code project, and since then many volunteers have contributed. See
+the `About us <https://scikit-learn.org/dev/about.html#authors>`__ page
+for a list of core contributors.
+
+The project is currently maintained by a team of volunteers.
+
+**Note**: `scikit-learn` was previously referred to as `scikits.learn`.
+
+Help and Support
+----------------
+
+Documentation
+~~~~~~~~~~~~~
+
+- HTML documentation (stable release): https://scikit-learn.org
+- HTML documentation (development version): https://scikit-learn.org/dev/
+- FAQ: https://scikit-learn.org/stable/faq.html
+
+Communication
+~~~~~~~~~~~~~
+
+- Mailing list: https://mail.python.org/mailman/listinfo/scikit-learn
+- Logos & Branding: https://github.com/scikit-learn/scikit-learn/tree/main/doc/logos
+- Blog: https://blog.scikit-learn.org
+- Calendar: https://blog.scikit-learn.org/calendar/
+- Twitter: https://twitter.com/scikit_learn
+- Stack Overflow: https://stackoverflow.com/questions/tagged/scikit-learn
+- GitHub Discussions: https://github.com/scikit-learn/scikit-learn/discussions
+- Website: https://scikit-learn.org
+- LinkedIn: https://www.linkedin.com/company/scikit-learn
+- YouTube: https://www.youtube.com/channel/UCJosFjYm0ZYVUARxuOZqnnw/playlists
+- Facebook: https://www.facebook.com/scikitlearnofficial/
+- Instagram: https://www.instagram.com/scikitlearnofficial/
+- TikTok: https://www.tiktok.com/@scikit.learn
+- Mastodon: https://mastodon.social/@sklearn@fosstodon.org
+- Discord: https://discord.gg/h9qyrK8Jc8
+
+
+Citation
+~~~~~~~~
+
+If you use scikit-learn in a scientific publication, we would appreciate citations: https://scikit-learn.org/stable/about.html#citing-scikit-learn