scikit-dimension 0.3.4__tar.gz → 0.3.7__tar.gz

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/PKG-INFO

@@ -1,12 +1,11 @@
 Metadata-Version: 2.1
 Name: scikit-dimension
-Version: 0.3.4
+Version: 0.3.7
 Summary: scikit-dimension is a Python module for intrinsic dimension estimation built according to the scikit-learn API and distributed under the 3-Clause BSD license..
 Home-page: https://github.com/j-bac/scikit-dimension
+Download-URL: https://github.com/j-bac/scikit-dimension
 Maintainer: Jonathan Bac
 License: BSD-3-clause
-Download-URL: https://github.com/j-bac/scikit-dimension
-Platform: UNKNOWN
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved
 Classifier: Programming Language :: Python
@@ -17,9 +16,18 @@ Classifier: Operating System :: MacOS
 Classifier: Programming Language :: Python :: 3.6
 Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: numba
+Requires-Dist: scipy
+Requires-Dist: scikit-learn
+Requires-Dist: matplotlib
 Provides-Extra: tests
+Requires-Dist: pytest; extra == "tests"
+Requires-Dist: pytest-cov; extra == "tests"
 Provides-Extra: docs
-License-File: LICENSE
-
-UNKNOWN
-
+Requires-Dist: sphinx; extra == "docs"
+Requires-Dist: sphinx-gallery; extra == "docs"
+Requires-Dist: sphinx_rtd_theme; extra == "docs"
+Requires-Dist: numpydoc; extra == "docs"
+Requires-Dist: matplotlib; extra == "docs"

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/README.md

@@ -1,49 +1,49 @@
-[![Build status](https://ci.appveyor.com/api/projects/status/tvumlfad69g6ap3u/branch/master?svg=true)](https://ci.appveyor.com/project/j-bac/scikit-dimension/branch/master)
-[![CircleCI](https://circleci.com/gh/scikit-learn-contrib/scikit-dimension/tree/master.svg?style=shield)](https://app.circleci.com/pipelines/github/scikit-learn-contrib/scikit-dimension)
-[![Documentation Status](https://readthedocs.org/projects/scikit-dimension/badge/?version=latest)](https://scikit-dimension.readthedocs.io/en/latest/?badge=latest)
-[![codecov](https://codecov.io/gh/j-bac/scikit-dimension/branch/master/graph/badge.svg)](https://codecov.io/gh/j-bac/scikit-dimension)
-[![GitHub license](https://img.shields.io/github/license/j-bac/scikit-dimension)](https://github.com/j-bac/scikit-dimension/blob/master/LICENSE)
-[![Downloads](https://pepy.tech/badge/scikit-dimension)](https://pepy.tech/project/scikit-dimension)
- 
-# scikit-dimension
-
-scikit-dimension is a Python module for intrinsic dimension estimation built according to the [scikit-learn](https://github.com/scikit-learn/scikit-learn) API and distributed under the 3-Clause BSD license.
-
-Please refer to the [documentation](https://scikit-dimension.readthedocs.io) and the [paper](https://www.mdpi.com/1099-4300/23/10/1368) for detailed API, examples and references
-
-### Installation
-
-Using pip:
-```bash
-pip install scikit-dimension
-```
-
-From source:
-```bash
-git clone https://github.com/j-bac/scikit-dimension
-cd scikit-dimension
-pip install .
-```
- 
-### Quick start
-
-Local and global estimators can be used in this way:
-
-```python
-import skdim
-import numpy as np
-
-#generate data : np.array (n_points x n_dim). Here a uniformly sampled 5-ball embedded in 10 dimensions
-data = np.zeros((1000,10))
-data[:,:5] = skdim.datasets.hyperBall(n = 1000, d = 5, radius = 1, random_state = 0)
-
-#estimate global intrinsic dimension
-danco = skdim.id.DANCo().fit(data)
-#estimate local intrinsic dimension (dimension in k-nearest-neighborhoods around each point):
-lpca = skdim.id.lPCA().fit_pw(data,
-                              n_neighbors = 100,
-                              n_jobs = 1)
-                            
-#get estimated intrinsic dimension
-print(danco.dimension_, np.mean(lpca.dimension_pw_)) 
-```
+[![Build status](https://ci.appveyor.com/api/projects/status/tvumlfad69g6ap3u/branch/master?svg=true)](https://ci.appveyor.com/project/j-bac/scikit-dimension/branch/master)
+[![CircleCI](https://circleci.com/gh/scikit-learn-contrib/scikit-dimension/tree/master.svg?style=shield)](https://app.circleci.com/pipelines/github/scikit-learn-contrib/scikit-dimension)
+[![Documentation Status](https://readthedocs.org/projects/scikit-dimension/badge/?version=latest)](https://scikit-dimension.readthedocs.io/en/latest/?badge=latest)
+[![codecov](https://codecov.io/gh/j-bac/scikit-dimension/branch/master/graph/badge.svg)](https://codecov.io/gh/j-bac/scikit-dimension)
+[![GitHub license](https://img.shields.io/github/license/j-bac/scikit-dimension)](https://github.com/j-bac/scikit-dimension/blob/master/LICENSE)
+[![Downloads](https://pepy.tech/badge/scikit-dimension)](https://pepy.tech/project/scikit-dimension)
+
+# scikit-dimension
+
+scikit-dimension is a Python module for intrinsic dimension estimation built according to the [scikit-learn](https://github.com/scikit-learn/scikit-learn) API and distributed under the 3-Clause BSD license.
+
+Please refer to the [documentation](https://scikit-dimension.readthedocs.io) and the [paper](https://www.mdpi.com/1099-4300/23/10/1368) for detailed API, examples and references
+
+### Installation
+
+Using pip:
+```bash
+pip install scikit-dimension
+```
+
+From source:
+```bash
+git clone https://github.com/j-bac/scikit-dimension
+cd scikit-dimension
+pip install .
+```
+  
+### Quick start
+
+Local and global estimators can be used in this way:
+
+```python
+import skdim
+import numpy as np
+
+#generate data : np.array (n_points x n_dim). Here a uniformly sampled 5-ball embedded in 10 dimensions
+data = np.zeros((1000,10))
+data[:,:5] = skdim.datasets.hyperBall(n = 1000, d = 5, radius = 1, random_state = 0)
+
+#estimate global intrinsic dimension
+danco = skdim.id.DANCo().fit(data)
+#estimate local intrinsic dimension (dimension in k-nearest-neighborhoods around each point):
+lpca = skdim.id.lPCA().fit_pw(data,
+                              n_neighbors = 100,
+                              n_jobs = 1)
+                            
+#get estimated intrinsic dimension
+print(danco.dimension_, np.mean(lpca.dimension_pw_)) 
+```

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/requirements.txt

@@ -1,4 +1,4 @@
-numpy<=1.20
+numpy
 scipy
 scikit-learn
 numba

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/scikit_dimension.egg-info/PKG-INFO

@@ -1,12 +1,11 @@
 Metadata-Version: 2.1
 Name: scikit-dimension
-Version: 0.3.4
+Version: 0.3.7
 Summary: scikit-dimension is a Python module for intrinsic dimension estimation built according to the scikit-learn API and distributed under the 3-Clause BSD license..
 Home-page: https://github.com/j-bac/scikit-dimension
+Download-URL: https://github.com/j-bac/scikit-dimension
 Maintainer: Jonathan Bac
 License: BSD-3-clause
-Download-URL: https://github.com/j-bac/scikit-dimension
-Platform: UNKNOWN
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved
 Classifier: Programming Language :: Python
@@ -17,9 +16,18 @@ Classifier: Operating System :: MacOS
 Classifier: Programming Language :: Python :: 3.6
 Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: numba
+Requires-Dist: scipy
+Requires-Dist: scikit-learn
+Requires-Dist: matplotlib
 Provides-Extra: tests
+Requires-Dist: pytest; extra == "tests"
+Requires-Dist: pytest-cov; extra == "tests"
 Provides-Extra: docs
-License-File: LICENSE
-
-UNKNOWN
-
+Requires-Dist: sphinx; extra == "docs"
+Requires-Dist: sphinx-gallery; extra == "docs"
+Requires-Dist: sphinx_rtd_theme; extra == "docs"
+Requires-Dist: numpydoc; extra == "docs"
+Requires-Dist: matplotlib; extra == "docs"

scikit_dimension-0.3.7/scikit_dimension.egg-info/SOURCES.txt

@@ -0,0 +1,33 @@
+LICENSE
+MANIFEST.in
+README.md
+requirements.txt
+setup.cfg
+setup.py
+scikit_dimension.egg-info/PKG-INFO
+scikit_dimension.egg-info/SOURCES.txt
+scikit_dimension.egg-info/dependency_links.txt
+scikit_dimension.egg-info/not-zip-safe
+scikit_dimension.egg-info/requires.txt
+scikit_dimension.egg-info/top_level.txt
+skdim/__init__.py
+skdim/_commonfuncs.py
+skdim/_version.py
+skdim/datasets.py
+skdim/id/_CorrInt.py
+skdim/id/_DANCo.py
+skdim/id/_DANCoUtils.py
+skdim/id/_ESS.py
+skdim/id/_FisherS.py
+skdim/id/_KNN.py
+skdim/id/_MADA.py
+skdim/id/_MLE.py
+skdim/id/_MOM.py
+skdim/id/_MiND_ML.py
+skdim/id/_PCA.py
+skdim/id/_TLE.py
+skdim/id/_TwoNN.py
+skdim/id/__init__.py
+skdim/tests/__init__.py
+skdim/tests/test_all_params.py
+skdim/tests/test_results.py

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/scikit_dimension.egg-info/requires.txt

@@ -2,6 +2,7 @@ numpy
 numba
 scipy
 scikit-learn
+matplotlib
 
 [docs]
 sphinx

{scikit-dimension-0.3.4 → scikit_dimension-0.3.7}/setup.py

@@ -49,7 +49,7 @@ URL = "https://github.com/j-bac/scikit-dimension"
 LICENSE = "BSD-3-clause"
 DOWNLOAD_URL = "https://github.com/j-bac/scikit-dimension"
 VERSION = __version__
-INSTALL_REQUIRES = ["numpy", "numba", "scipy", "scikit-learn"]
+INSTALL_REQUIRES = ["numpy", "numba", "scipy", "scikit-learn", "matplotlib"]
 CLASSIFIERS = [
     "Intended Audience :: Science/Research",
     "License :: OSI Approved",