scikit-dimension 0.3.3__tar.gz → 0.3.4__tar.gz

scikit-dimension-0.3.4/.circleci/config.yml

@@ -0,0 +1,45 @@
+version: 2
+#wget https://github.com/jgm/pandoc/releases/download/2.11.2/pandoc-2.11.2-linux-amd64.tar.gz
+#tar xvzf pandoc-2.11.2-linux-amd64.tar.gz
+#export PATH=$HOME/pandoc-2.11.2/bin:$PATH
+jobs:
+  python3:
+    docker:
+      - image: circleci/python:3.6.4
+    steps:
+      - checkout
+      - run:
+          command: |
+            wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+            chmod +x miniconda.sh && ./miniconda.sh -b -p ~/miniconda
+            export PATH="~/miniconda/bin:$PATH"
+            conda update --yes --quiet conda
+            conda create -n testenv --yes --quiet python=3.6.4
+            source activate testenv
+            conda install --yes pip
+            conda install -c conda-forge pandoc  --yes
+            pip install -r doc/requirements.txt --ignore-installed certifi
+            pip install -r requirements.txt --ignore-installed certifi
+            pip install . --ignore-installed certifi
+            cd doc
+            make html
+      - store_artifacts:
+          path: doc/_build/html
+          destination: doc
+      - store_artifacts:
+          path: ~/log.txt
+      - persist_to_workspace:
+          root: doc/_build/html
+          paths: .
+      - attach_workspace:
+          at: doc/_build/html
+      - run: ls -ltrh doc/_build/html
+    filters:
+      branches:
+        ignore: gh-pages
+
+workflows:
+  version: 2
+  build-doc-and-deploy:
+    jobs:
+      - python3

scikit-dimension-0.3.4/.coveragerc

@@ -0,0 +1,21 @@
+# Configuration for coverage.py
+
+[run]
+branch = True
+source = skdim
+include = */skdim/*
+omit =
+    */setup.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    def __repr__
+    if self.debug:
+    if settings.DEBUG
+    raise AssertionError
+    raise NotImplementedError
+    if 0:
+    if __name__ == .__main__.:
+    if self.verbose:
+show_missing = True

scikit-dimension-0.3.4/.github/workflows/python-publish.yml

@@ -0,0 +1,34 @@
+# This workflows will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [created]
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+        ref: main
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel twine
+    - name: Build and publish
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: |
+        python setup.py sdist bdist_wheel
+        twine upload --skip-existing dist/*

scikit-dimension-0.3.4/.gitignore

@@ -0,0 +1,71 @@
+*.vscode
+*.idea
+*.ini
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# scikit-learn specific
+doc/_build/
+doc/auto_examples/
+doc/modules/generated/
+doc/datasets/generated/
+
+# Distribution / packaging
+
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+*.ipynb_checkpoints/
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+doc/_build/
+doc/generated/
+
+# PyBuilder
+target/

scikit-dimension-0.3.4/.readthedocs.yml

@@ -0,0 +1,20 @@
+version: 2
+
+# Set the version of Python and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.7"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: doc/conf.py
+
+python:
+  install:
+    - requirements: doc/requirements.txt
+    - requirements: requirements.txt
+    - method: pip
+      path: .
+      extra_requirements:
+        - doc

scikit-dimension-0.3.4/.travis.yml

@@ -0,0 +1,59 @@
+dist: trusty
+sudo: false
+
+jobs:
+  include:
+    - name: Python 3.7 on Ubuntu Linux 18.04
+      os: linux
+      dist: bionic
+      language: python
+      python: '3.7'
+    - name: Python 3.8 on Ubuntu Linux 18.04
+      os: linux
+      dist: bionic
+      language: python
+      python: '3.8'
+    # See https://blog.travis-ci.com/2019-08-07-extensive-python-testing-on-travis-ci
+    # for macos config peculiarities.
+    - name: Python 3.7 on MacOS X (xcode 10.3)
+      os: osx
+      language: shell
+      osx_image: xcode10.3  # Python 3.7
+    - name: Python 3.7 on MacOS X (xcode 11.3)
+      os: osx
+      language: shell
+      osx_image: xcode11.3  # Python 3.7.5
+      
+
+cache:
+  directories:
+  - $HOME/.cache/pip
+
+install:
+  # install miniconda
+  #- deactivate
+  - |
+      if [[ "$TRAVIS_OS_NAME" == 'linux' ]] && [[ "$TRAVIS_PYTHON_VERSION" == 2* ]]; then
+          echo "WARNING: using Python2"
+          wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
+      elif [[ "$TRAVIS_OS_NAME" == 'linux' ]]; then
+          wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+      elif [[ "$TRAVIS_OS_NAME" == 'osx' ]]; then
+          wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh;
+      fi
+  - MINICONDA_PATH=$HOME/miniconda
+  - chmod +x miniconda.sh && ./miniconda.sh -b -p $MINICONDA_PATH
+  - export PATH=$MINICONDA_PATH/bin:$PATH
+  - conda update -y conda
+  # create the testing environment
+  - conda create -n testenv python=$TRAVIS_PYTHON_VERSION pip --yes
+  - conda activate testenv
+  - conda install -y numpy scipy scikit-learn nose numba matplotlib pytest pytest-cov
+  - pip install codecov
+  - pip install .
+
+script:
+  - pytest -v --cov=skdim --ignore=skdim/tests/test_results.py --pyargs skdim
+
+after_success:
+  - codecov

{scikit-dimension-0.3.3/scikit_dimension.egg-info → scikit-dimension-0.3.4}/PKG-INFO

@@ -1,11 +1,12 @@
 Metadata-Version: 2.1
 Name: scikit-dimension
-Version: 0.3.3
+Version: 0.3.4
 Summary: scikit-dimension is a Python module for intrinsic dimension estimation built according to the scikit-learn API and distributed under the 3-Clause BSD license..
 Home-page: https://github.com/j-bac/scikit-dimension
-Download-URL: https://github.com/j-bac/scikit-dimension
 Maintainer: Jonathan Bac
 License: BSD-3-clause
+Download-URL: https://github.com/j-bac/scikit-dimension
+Platform: UNKNOWN
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved
 Classifier: Programming Language :: Python
@@ -19,3 +20,6 @@ Classifier: Programming Language :: Python :: 3.8
 Provides-Extra: tests
 Provides-Extra: docs
 License-File: LICENSE
+
+UNKNOWN
+

{scikit-dimension-0.3.3 → scikit-dimension-0.3.4}/README.md

@@ -1,50 +1,49 @@
-[![Build status](https://ci.appveyor.com/api/projects/status/tvumlfad69g6ap3u/branch/master?svg=true)](https://ci.appveyor.com/project/j-bac/scikit-dimension/branch/master)
-[![CircleCI](https://circleci.com/gh/scikit-learn-contrib/scikit-dimension/tree/master.svg?style=shield)](https://app.circleci.com/pipelines/github/scikit-learn-contrib/scikit-dimension)
-[![Documentation Status](https://readthedocs.org/projects/scikit-dimension/badge/?version=latest)](https://scikit-dimension.readthedocs.io/en/latest/?badge=latest)
-[![codecov](https://codecov.io/gh/j-bac/scikit-dimension/branch/master/graph/badge.svg)](https://codecov.io/gh/j-bac/scikit-dimension)
-[![Language grade: Python](https://img.shields.io/lgtm/grade/python/g/j-bac/scikit-dimension.svg?logo=lgtm&logoWidth=18&label=%20code%20quality)](https://lgtm.com/projects/g/j-bac/scikit-dimension/context:python)
-[![GitHub license](https://img.shields.io/github/license/j-bac/scikit-dimension)](https://github.com/j-bac/scikit-dimension/blob/master/LICENSE)
-[![Downloads](https://pepy.tech/badge/scikit-dimension)](https://pepy.tech/project/scikit-dimension)
-
-# scikit-dimension
-
-scikit-dimension is a Python module for intrinsic dimension estimation built according to the [scikit-learn](https://github.com/scikit-learn/scikit-learn) API and distributed under the 3-Clause BSD license.
-
-Please refer to the [documentation](https://scikit-dimension.readthedocs.io) and the [paper](https://www.mdpi.com/1099-4300/23/10/1368) for detailed API, examples and references
-
-### Installation
-
-Using pip:
-```bash
-pip install scikit-dimension
-```
-
-From source:
-```bash
-git clone https://github.com/j-bac/scikit-dimension
-cd scikit-dimension
-pip install .
-```
- 
-### Quick start
-
-Local and global estimators can be used in this way:
-
-```python
-import skdim
-import numpy as np
-
-#generate data : np.array (n_points x n_dim). Here a uniformly sampled 5-ball embedded in 10 dimensions
-data = np.zeros((1000,10))
-data[:,:5] = skdim.datasets.hyperBall(n = 1000, d = 5, radius = 1, random_state = 0)
-
-#estimate global intrinsic dimension
-danco = skdim.id.DANCo().fit(data)
-#estimate local intrinsic dimension (dimension in k-nearest-neighborhoods around each point):
-lpca = skdim.id.lPCA().fit_pw(data,
-                              n_neighbors = 100,
-                              n_jobs = 1)
-                            
-#get estimated intrinsic dimension
-print(danco.dimension_, np.mean(lpca.dimension_pw_)) 
-```
+[![Build status](https://ci.appveyor.com/api/projects/status/tvumlfad69g6ap3u/branch/master?svg=true)](https://ci.appveyor.com/project/j-bac/scikit-dimension/branch/master)
+[![CircleCI](https://circleci.com/gh/scikit-learn-contrib/scikit-dimension/tree/master.svg?style=shield)](https://app.circleci.com/pipelines/github/scikit-learn-contrib/scikit-dimension)
+[![Documentation Status](https://readthedocs.org/projects/scikit-dimension/badge/?version=latest)](https://scikit-dimension.readthedocs.io/en/latest/?badge=latest)
+[![codecov](https://codecov.io/gh/j-bac/scikit-dimension/branch/master/graph/badge.svg)](https://codecov.io/gh/j-bac/scikit-dimension)
+[![GitHub license](https://img.shields.io/github/license/j-bac/scikit-dimension)](https://github.com/j-bac/scikit-dimension/blob/master/LICENSE)
+[![Downloads](https://pepy.tech/badge/scikit-dimension)](https://pepy.tech/project/scikit-dimension)
+ 
+# scikit-dimension
+
+scikit-dimension is a Python module for intrinsic dimension estimation built according to the [scikit-learn](https://github.com/scikit-learn/scikit-learn) API and distributed under the 3-Clause BSD license.
+
+Please refer to the [documentation](https://scikit-dimension.readthedocs.io) and the [paper](https://www.mdpi.com/1099-4300/23/10/1368) for detailed API, examples and references
+
+### Installation
+
+Using pip:
+```bash
+pip install scikit-dimension
+```
+
+From source:
+```bash
+git clone https://github.com/j-bac/scikit-dimension
+cd scikit-dimension
+pip install .
+```
+ 
+### Quick start
+
+Local and global estimators can be used in this way:
+
+```python
+import skdim
+import numpy as np
+
+#generate data : np.array (n_points x n_dim). Here a uniformly sampled 5-ball embedded in 10 dimensions
+data = np.zeros((1000,10))
+data[:,:5] = skdim.datasets.hyperBall(n = 1000, d = 5, radius = 1, random_state = 0)
+
+#estimate global intrinsic dimension
+danco = skdim.id.DANCo().fit(data)
+#estimate local intrinsic dimension (dimension in k-nearest-neighborhoods around each point):
+lpca = skdim.id.lPCA().fit_pw(data,
+                              n_neighbors = 100,
+                              n_jobs = 1)
+                            
+#get estimated intrinsic dimension
+print(danco.dimension_, np.mean(lpca.dimension_pw_)) 
+```

scikit-dimension-0.3.4/appveyor.yml

@@ -0,0 +1,44 @@
+build: false
+
+environment:
+  matrix:
+    - PYTHON: "C:\\Miniconda3-x64"
+      PYTHON_VERSION: "3.6.x"
+      PYTHON_ARCH: "64"
+      NUMPY_VERSION: "*"
+      SCIPY_VERSION: "*"
+      SKLEARN_VERSION: "*"
+      
+    - PYTHON: "C:\\Miniconda3-x64"
+      PYTHON_VERSION: "3.7.x"
+      PYTHON_ARCH: "64"
+      NUMPY_VERSION: "*"
+      SCIPY_VERSION: "*"
+      SKLEARN_VERSION: "*"
+
+    - PYTHON: "C:\\Miniconda3-x64"
+      PYTHON_VERSION: "3.8.x"
+      PYTHON_ARCH: "64"
+      NUMPY_VERSION: "*"
+      SCIPY_VERSION: "*"
+      SKLEARN_VERSION: "*"
+      
+install:
+  # Prepend miniconda installed Python to the PATH of this build
+  # Add Library/bin directory to fix issue
+  # https://github.com/conda/conda/issues/1753
+  - "SET PATH=%PYTHON%;%PYTHON%\\Scripts;%PYTHON%\\Library\\bin;%PATH%"
+  # install the dependencies
+  - "conda install --yes pip numpy==%NUMPY_VERSION% scipy==%SCIPY_VERSION% scikit-learn==%SKLEARN_VERSION% numba matplotlib pandas nose pytest pytest-cov"
+  - pip install codecov
+  - pip install .
+
+test_script:
+  - mkdir for_test
+  - cd for_test
+  - pytest -v --cov=skdim --ignore=skdim/tests/test_results.py --pyargs skdim
+
+after_test:
+  - cp .coverage %APPVEYOR_BUILD_FOLDER%
+  - cd %APPVEYOR_BUILD_FOLDER%
+  - codecov

scikit-dimension-0.3.4/doc/Makefile

@@ -0,0 +1,184 @@
+# Makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = sphinx-build
+PAPER         =
+BUILDDIR      = _build
+
+# User-friendly check for sphinx-build
+ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
+$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
+endif
+
+# Internal variables.
+PAPEROPT_a4     = -D latex_paper_size=a4
+PAPEROPT_letter = -D latex_paper_size=letter
+ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+# the i18n builder cannot share the environment and doctrees with the others
+I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+
+.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
+
+help:
+	@echo "Please use \`make <target>' where <target> is one of"
+	@echo "  html       to make standalone HTML files"
+	@echo "  dirhtml    to make HTML files named index.html in directories"
+	@echo "  singlehtml to make a single large HTML file"
+	@echo "  pickle     to make pickle files"
+	@echo "  json       to make JSON files"
+	@echo "  htmlhelp   to make HTML files and a HTML help project"
+	@echo "  qthelp     to make HTML files and a qthelp project"
+	@echo "  devhelp    to make HTML files and a Devhelp project"
+	@echo "  epub       to make an epub"
+	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
+	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"
+	@echo "  latexpdfja to make LaTeX files and run them through platex/dvipdfmx"
+	@echo "  text       to make text files"
+	@echo "  man        to make manual pages"
+	@echo "  texinfo    to make Texinfo files"
+	@echo "  info       to make Texinfo files and run them through makeinfo"
+	@echo "  gettext    to make PO message catalogs"
+	@echo "  changes    to make an overview of all changed/added/deprecated items"
+	@echo "  xml        to make Docutils-native XML files"
+	@echo "  pseudoxml  to make pseudoxml-XML files for display purposes"
+	@echo "  linkcheck  to check all external links for integrity"
+	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
+
+clean:
+	-rm -rf $(BUILDDIR)/*
+	-rm -rf auto_examples/
+	-rm -rf generated/*
+	-rm -rf modules/generated/*
+
+html:
+	# These two lines make the build a bit more lengthy, and the
+	# the embedding of images more robust
+	rm -rf $(BUILDDIR)/html/_images
+	#rm -rf _build/doctrees/
+	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
+	@echo
+	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
+
+dirhtml:
+	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
+	@echo
+	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
+
+singlehtml:
+	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
+	@echo
+	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
+
+pickle:
+	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
+	@echo
+	@echo "Build finished; now you can process the pickle files."
+
+json:
+	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
+	@echo
+	@echo "Build finished; now you can process the JSON files."
+
+htmlhelp:
+	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
+	@echo
+	@echo "Build finished; now you can run HTML Help Workshop with the" \
+	      ".hhp project file in $(BUILDDIR)/htmlhelp."
+
+qthelp:
+	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
+	@echo
+	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
+	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
+	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/project-template.qhcp"
+	@echo "To view the help file:"
+	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/project-template.qhc"
+
+devhelp:
+	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
+	@echo
+	@echo "Build finished."
+	@echo "To view the help file:"
+	@echo "# mkdir -p $$HOME/.local/share/devhelp/project-template"
+	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/project-template"
+	@echo "# devhelp"
+
+epub:
+	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
+	@echo
+	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
+
+latex:
+	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+	@echo
+	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
+	@echo "Run \`make' in that directory to run these through (pdf)latex" \
+	      "(use \`make latexpdf' here to do that automatically)."
+
+latexpdf:
+	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+	@echo "Running LaTeX files through pdflatex..."
+	$(MAKE) -C $(BUILDDIR)/latex all-pdf
+	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
+
+latexpdfja:
+	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+	@echo "Running LaTeX files through platex and dvipdfmx..."
+	$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja
+	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
+
+text:
+	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
+	@echo
+	@echo "Build finished. The text files are in $(BUILDDIR)/text."
+
+man:
+	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
+	@echo
+	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
+
+texinfo:
+	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+	@echo
+	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
+	@echo "Run \`make' in that directory to run these through makeinfo" \
+	      "(use \`make info' here to do that automatically)."
+
+info:
+	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+	@echo "Running Texinfo files through makeinfo..."
+	make -C $(BUILDDIR)/texinfo info
+	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
+
+gettext:
+	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
+	@echo
+	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
+
+changes:
+	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
+	@echo
+	@echo "The overview file is in $(BUILDDIR)/changes."
+
+linkcheck:
+	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
+	@echo
+	@echo "Link check complete; look for any errors in the above output " \
+	      "or in $(BUILDDIR)/linkcheck/output.txt."
+
+doctest:
+	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
+	@echo "Testing of doctests in the sources finished, look at the " \
+	      "results in $(BUILDDIR)/doctest/output.txt."
+
+xml:
+	$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml
+	@echo
+	@echo "Build finished. The XML files are in $(BUILDDIR)/xml."
+
+pseudoxml:
+	$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml
+	@echo
+	@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."