scikit-base 0.12.0__tar.gz → 0.12.3__tar.gz

{scikit_base-0.12.0/scikit_base.egg-info → scikit_base-0.12.3}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: scikit-base
-Version: 0.12.0
+Version: 0.12.3
 Summary: Base classes for sklearn-like parametric objects
 Author-email: sktime developers <sktime.toolbox@gmail.com>
 Maintainer: Franz Király
@@ -90,7 +90,7 @@ Requires-Dist: nbsphinx>=0.8.6; extra == "docs"
 Requires-Dist: numpydoc; extra == "docs"
 Requires-Dist: pydata-sphinx-theme; extra == "docs"
 Requires-Dist: sphinx-issues<6.0.0; extra == "docs"
-Requires-Dist: sphinx-gallery<0.19.0; extra == "docs"
+Requires-Dist: sphinx-gallery<0.20.0; extra == "docs"
 Requires-Dist: sphinx-panels; extra == "docs"
 Requires-Dist: sphinx-design<0.7.0; extra == "docs"
 Requires-Dist: Sphinx!=7.2.0,<9.0.0; extra == "docs"
@@ -104,6 +104,7 @@ Requires-Dist: numpy; extra == "test"
 Requires-Dist: scipy; extra == "test"
 Requires-Dist: pandas; extra == "test"
 Requires-Dist: scikit-learn>=0.24.0; extra == "test"
+Dynamic: license-file
 
 <a href="https://skbase.readthedocs.io/en/latest/"><img src="https://github.com/sktime/skbase/blob/main/docs/source/images/skbase-logo-with-name.png" width="175" align="right" /></a>
 
@@ -114,7 +115,7 @@ Requires-Dist: scikit-learn>=0.24.0; extra == "test"
 `skbase` provides base classes for creating scikit-learn-like parametric objects,
 along with tools to make it easier to build your own packages that follow these design patterns.
 
-:rocket: Version 0.12.0 is now available. Check out our
+:rocket: Version 0.12.3 is now available. Check out our
 [release notes](https://skbase.readthedocs.io/en/latest/changelog.html).
 
 | Overview | |
@@ -160,3 +161,13 @@ or, if you want to install with the maximum set of dependencies, use:
 ```bash
 pip install scikit-base[all_extras]
 ```
+
+## Contributors ✨
+
+This project follows the
+[all-contributors](https://github.com/all-contributors/all-contributors) specification.
+Contributions of any kind welcome!
+
+Thanks go to these wonderful people:
+
+[skbase contributors](https://github.com/sktime/skbase/graphs/contributors)

{scikit_base-0.12.0 → scikit_base-0.12.3}/README.md

@@ -7,7 +7,7 @@
 `skbase` provides base classes for creating scikit-learn-like parametric objects,
 along with tools to make it easier to build your own packages that follow these design patterns.
 
-:rocket: Version 0.12.0 is now available. Check out our
+:rocket: Version 0.12.3 is now available. Check out our
 [release notes](https://skbase.readthedocs.io/en/latest/changelog.html).
 
 | Overview | |
@@ -53,3 +53,13 @@ or, if you want to install with the maximum set of dependencies, use:
 ```bash
 pip install scikit-base[all_extras]
 ```
+
+## Contributors ✨
+
+This project follows the
+[all-contributors](https://github.com/all-contributors/all-contributors) specification.
+Contributions of any kind welcome!
+
+Thanks go to these wonderful people:
+
+[skbase contributors](https://github.com/sktime/skbase/graphs/contributors)

{scikit_base-0.12.0 → scikit_base-0.12.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "scikit-base"
-version = "0.12.0"
+version = "0.12.3"
 description = "Base classes for sklearn-like parametric objects"
 authors = [
     {name = "sktime developers", email = "sktime.toolbox@gmail.com"},
@@ -71,7 +71,7 @@ docs = [
     "numpydoc",
     "pydata-sphinx-theme",
     "sphinx-issues<6.0.0",
-    "sphinx-gallery<0.19.0",
+    "sphinx-gallery<0.20.0",
     "sphinx-panels",
     "sphinx-design<0.7.0",
     "Sphinx!=7.2.0,<9.0.0",

{scikit_base-0.12.0 → scikit_base-0.12.3/scikit_base.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: scikit-base
-Version: 0.12.0
+Version: 0.12.3
 Summary: Base classes for sklearn-like parametric objects
 Author-email: sktime developers <sktime.toolbox@gmail.com>
 Maintainer: Franz Király
@@ -90,7 +90,7 @@ Requires-Dist: nbsphinx>=0.8.6; extra == "docs"
 Requires-Dist: numpydoc; extra == "docs"
 Requires-Dist: pydata-sphinx-theme; extra == "docs"
 Requires-Dist: sphinx-issues<6.0.0; extra == "docs"
-Requires-Dist: sphinx-gallery<0.19.0; extra == "docs"
+Requires-Dist: sphinx-gallery<0.20.0; extra == "docs"
 Requires-Dist: sphinx-panels; extra == "docs"
 Requires-Dist: sphinx-design<0.7.0; extra == "docs"
 Requires-Dist: Sphinx!=7.2.0,<9.0.0; extra == "docs"
@@ -104,6 +104,7 @@ Requires-Dist: numpy; extra == "test"
 Requires-Dist: scipy; extra == "test"
 Requires-Dist: pandas; extra == "test"
 Requires-Dist: scikit-learn>=0.24.0; extra == "test"
+Dynamic: license-file
 
 <a href="https://skbase.readthedocs.io/en/latest/"><img src="https://github.com/sktime/skbase/blob/main/docs/source/images/skbase-logo-with-name.png" width="175" align="right" /></a>
 
@@ -114,7 +115,7 @@ Requires-Dist: scikit-learn>=0.24.0; extra == "test"
 `skbase` provides base classes for creating scikit-learn-like parametric objects,
 along with tools to make it easier to build your own packages that follow these design patterns.
 
-:rocket: Version 0.12.0 is now available. Check out our
+:rocket: Version 0.12.3 is now available. Check out our
 [release notes](https://skbase.readthedocs.io/en/latest/changelog.html).
 
 | Overview | |
@@ -160,3 +161,13 @@ or, if you want to install with the maximum set of dependencies, use:
 ```bash
 pip install scikit-base[all_extras]
 ```
+
+## Contributors ✨
+
+This project follows the
+[all-contributors](https://github.com/all-contributors/all-contributors) specification.
+Contributions of any kind welcome!
+
+Thanks go to these wonderful people:
+
+[skbase contributors](https://github.com/sktime/skbase/graphs/contributors)

{scikit_base-0.12.0 → scikit_base-0.12.3}/scikit_base.egg-info/SOURCES.txt

@@ -45,6 +45,7 @@ skbase/utils/_check.py
 skbase/utils/_iter.py
 skbase/utils/_nested_iter.py
 skbase/utils/_utils.py
+skbase/utils/doctest_run.py
 skbase/utils/random_state.py
 skbase/utils/stderr_mute.py
 skbase/utils/stdout_mute.py

{scikit_base-0.12.0 → scikit_base-0.12.3}/scikit_base.egg-info/requires.txt

@@ -19,7 +19,7 @@ nbsphinx>=0.8.6
 numpydoc
 pydata-sphinx-theme
 sphinx-issues<6.0.0
-sphinx-gallery<0.19.0
+sphinx-gallery<0.20.0
 sphinx-panels
 sphinx-design<0.7.0
 Sphinx!=7.2.0,<9.0.0

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/__init__.py

@@ -6,4 +6,4 @@
 The included functionality makes it easy to reuse scikit-learn and
 sktime design principles in your project.
 """
-__version__: str = "0.12.0"
+__version__: str = "0.12.3"

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/_nopytest_tests.py

@@ -7,7 +7,7 @@ from skbase.lookup import all_objects
 
 MODULES_TO_IGNORE = ("tests", "testing", "dependencies", "all")
 
-# all_objectscrawls all modules excepting pytest test files
+# all_objects crawls all modules excepting pytest test files
 # if it encounters an unisolated import, it will throw an exception
 results = all_objects(modules_to_ignore=MODULES_TO_IGNORE)
 

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/base/_base.py

@@ -1169,13 +1169,19 @@ class BaseObject(_FlagManager):
 class TagAliaserMixin:
     """Mixin class for tag aliasing and deprecation of old tags.
 
-    To deprecate tags, add the TagAliaserMixin to BaseObject or BaseEstimator.
-    alias_dict contains the deprecated tags, and supports removal and renaming.
-        For removal, add an entry "old_tag_name": ""
-        For renaming, add an entry "old_tag_name": "new_tag_name"
-    deprecate_dict contains the version number of renaming or removal.
-        the keys in deprecate_dict should be the same as in alias_dict.
-        values in deprecate_dict should be strings, the version of removal/renaming.
+    To deprecate tags, add the ``TagAliaserMixin`` to ``BaseObject``
+    or ``BaseEstimator``.
+
+    ``alias_dict`` contains the deprecated tags, and supports removal and renaming.
+
+    * For removal, add an entry ``"old_tag_name": ""``
+    * For renaming, add an entry ``"old_tag_name": "new_tag_name"``
+
+    ``deprecate_dict`` contains the version number of renaming or removal.
+
+    * The keys in ``deprecate_dict`` should be the same as in alias_dict.
+    * Values in ``deprecate_dict`` should be strings, the version of
+    removal/renaming, in PEP 440 format, e.g., ``"1.0.0"``.
 
     The class will ensure that new tags alias old tags and vice versa, during
     the deprecation period. Informative warnings will be raised whenever the
@@ -1195,6 +1201,9 @@ class TagAliaserMixin:
     # key = old tag; value = version in which tag will be removed, as string
     deprecate_dict = {"old_tag": "0.12.0", "tag_to_remove": "99.99.99"}
 
+    # package name used for deprecation warnings
+    _package_name = ""
+
     def __init__(self):
         """Construct TagAliaserMixin."""
         super(TagAliaserMixin, self).__init__()
@@ -1242,6 +1251,7 @@ class TagAliaserMixin:
             tags set by ``set_tags`` or ``clone_tags``.
         """
         collected_tags = super(TagAliaserMixin, cls).get_class_tags()
+        cls._deprecate_tag_warn(collected_tags)
         collected_tags = cls._complete_dict(collected_tags)
         return collected_tags
 
@@ -1322,6 +1332,7 @@ class TagAliaserMixin:
             and new tags from ``_tags_dynamic`` object attribute.
         """
         collected_tags = super(TagAliaserMixin, self).get_tags()
+        self._deprecate_tag_warn(collected_tags)
         collected_tags = self._complete_dict(collected_tags)
         return collected_tags
 
@@ -1452,14 +1463,19 @@ class TagAliaserMixin:
             if tag_name in cls.alias_dict.keys():
                 version = cls.deprecate_dict[tag_name]
                 new_tag = cls.alias_dict[tag_name]
-                msg = f"tag {tag_name!r} will be removed in sktime version {version}"
+                pkg_name = cls._package_name
+                if pkg_name != "":
+                    pkg_name = f"{pkg_name} "
+                msg = (
+                    f"tag {tag_name!r} will be removed in {pkg_name} version {version}"
+                )
                 if new_tag != "":
                     msg += (
                         f" and replaced by {new_tag!r}, please use {new_tag!r} instead"
                     )
                 else:
                     msg += ", please remove code that access or sets {tag_name!r}"
-                warnings.warn(msg, category=DeprecationWarning, stacklevel=2)
+                warnings.warn(msg, category=FutureWarning, stacklevel=2)
 
 
 class BaseEstimator(BaseObject):

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/base/_meta.py

@@ -360,6 +360,7 @@ class _MetaObjectMixin:
         cls_type=None,
         allow_dict=False,
         allow_mix=True,
+        allow_empty=False,
         clone=True,
     ):
         """Check that objects is a list of objects or sequence of named objects.
@@ -373,10 +374,14 @@ class _MetaObjectMixin:
             Name of checked attribute in error messages.
         cls_type : class or tuple of classes, default=BaseEstimator.
             class(es) that all objects are checked to be an instance of.
+        allow_dict : bool, default=False
+            Whether ``objs`` can be a dictionary mapping str names to objects.
         allow_mix : bool, default=True
-            Whether mix of objects and (str, objects) is allowed in `objs.`
+            Whether mix of objects and (str, objects) is allowed in ``objs``.
+        allow_empty : bool, default=False
+            Whether ``objs`` can be empty.
         clone : bool, default=True
-            Whether objects or named objects in `objs` are returned as clones
+            Whether objects or named objects in ``objs`` are returned as clones
             (True) or references (False).
 
         Returns
@@ -421,7 +426,7 @@ class _MetaObjectMixin:
 
         if (
             objs is None
-            or len(objs) == 0
+            or (not allow_empty and len(objs) == 0)
             or not (isinstance(objs, list) or (allow_dict and isinstance(objs, dict)))
         ):
             raise TypeError(msg)

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/lookup/_lookup.py

@@ -430,7 +430,7 @@ def _get_module_info(
         authors = ", ".join(authors)
     # Compile information on classes in the module
     module_classes: MutableMapping = {}  # of ClassInfo type
-    for name, klass in inspect.getmembers(module, inspect.isclass):
+    for name, klass in _get_members_uw(module, inspect.isclass):
         # Skip a class if non-public items should be excluded and it starts with "_"
         if (
             (exclude_non_public_items and klass.__name__.startswith("_"))
@@ -440,7 +440,9 @@ def _get_module_info(
         ):
             continue
         # Otherwise, store info about the class
-        if klass.__module__ == module.__name__ or name in designed_imports:
+        uw_klass = inspect.unwrap(klass)  # unwrap any decorators
+        klassname = uw_klass.__name__
+        if uw_klass.__module__ == module.__name__ or name in designed_imports:
             klass_authors = getattr(klass, "__author__", authors)
             if isinstance(klass_authors, (list, tuple)):
                 klass_authors = ", ".join(klass_authors)
@@ -453,9 +455,9 @@ def _get_module_info(
                 )
             module_classes[name] = {
                 "klass": klass,
-                "name": klass.__name__,
+                "name": klassname,
                 "description": (
-                    "" if klass.__doc__ is None else klass.__doc__.split("\n")[0]
+                    "" if uw_klass.__doc__ is None else uw_klass.__doc__.split("\n")[0]
                 ),
                 "tags": (
                     klass.get_class_tags() if hasattr(klass, "get_class_tags") else None
@@ -464,23 +466,25 @@ def _get_module_info(
                 "is_base_class": klass in package_base_classes,
                 "is_base_object": issubclass(klass, BaseObject),
                 "authors": klass_authors,
-                "module_name": module.__name__,
+                "module_name": uw_klass.__module__,
             }
 
     module_functions: MutableMapping = {}  # of FunctionInfo type
-    for name, func in inspect.getmembers(module, inspect.isfunction):
-        if func.__module__ == module.__name__ or name in designed_imports:
+    for name, func in _get_members_uw(module, inspect.isfunction):
+        uw_func = inspect.unwrap(func)  # unwrap any decorators
+        funcname = uw_func.__name__
+        if uw_func.__module__ == module.__name__ or name in designed_imports:
             # Skip a class if non-public items should be excluded and it starts with "_"
-            if exclude_non_public_items and func.__name__.startswith("_"):
+            if exclude_non_public_items and funcname.startswith("_"):
                 continue
             # Otherwise, store info about the class
             module_functions[name] = {
                 "func": func,
-                "name": func.__name__,
+                "name": funcname,
                 "description": (
-                    "" if func.__doc__ is None else func.__doc__.split("\n")[0]
+                    "" if uw_func.__doc__ is None else uw_func.__doc__.split("\n")[0]
                 ),
-                "module_name": module.__name__,
+                "module_name": uw_func.__module__,
             }
 
     # Combine all the information on the module together
@@ -505,6 +509,22 @@ def _get_module_info(
     return module_info
 
 
+def _get_members_uw(module, predicate=None):
+    """Get members of a module. Same as inspect.getmembers, but robust to decorators."""
+    for name, obj in vars(module).items():
+        if not callable(obj):
+            continue
+
+        try:
+            unwrapped = inspect.unwrap(obj)
+        except ValueError:
+            continue  # skip circular wrappers or broken decorators
+
+        if predicate is not None and not predicate(unwrapped):
+            continue
+        yield name, obj
+
+
 def get_package_metadata(
     package_name: str,
     path: Optional[str] = None,
@@ -876,7 +896,7 @@ def all_objects(
 
     # remove names if return_names=False
     if not return_names:
-        all_estimators = [estimator for (name, estimator) in all_estimators]
+        all_estimators = [estimator for (_, estimator) in all_estimators]
         columns = ["object"]
     else:
         columns = ["name", "object"]

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/testing/test_all_objects.py

@@ -226,7 +226,7 @@ class BaseFixtureGenerator:
     @pytest.fixture(scope="function")
     def object_instance(self, request):
         """object_instance fixture definition for indirect use."""
-        # esetimator_instance is cloned at the start of every test
+        # estimator_instance is cloned at the start of every test
         return request.param.clone()
 
 

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/tests/conftest.py

@@ -56,6 +56,7 @@ SKBASE_MODULES = (
     "skbase.utils.dependencies",
     "skbase.utils.dependencies._dependencies",
     "skbase.utils.dependencies._import",
+    "skbase.utils.doctest_run",
     "skbase.utils.random_state",
     "skbase.utils.stderr_mute",
     "skbase.utils.stdout_mute",
@@ -83,6 +84,7 @@ SKBASE_PUBLIC_MODULES = (
     "skbase.utils",
     "skbase.utils.deep_equals",
     "skbase.utils.dependencies",
+    "skbase.utils.doctest_run",
     "skbase.utils.random_state",
     "skbase.utils.stderr_mute",
     "skbase.utils.stdout_mute",
@@ -188,6 +190,7 @@ SKBASE_PUBLIC_FUNCTIONS_BY_MODULE = {
     "skbase.utils._utils": ("subset_dict_keys",),
     "skbase.utils.deep_equals": ("deep_equals",),
     "skbase.utils.deep_equals._deep_equals": ("deep_equals", "deep_equals_custom"),
+    "skbase.utils.doctest_run": ("run_doctest",),
     "skbase.utils.random_state": (
         "check_random_state",
         "sample_dependent_seed",
@@ -199,7 +202,11 @@ SKBASE_FUNCTIONS_BY_MODULE = SKBASE_PUBLIC_FUNCTIONS_BY_MODULE.copy()
 SKBASE_FUNCTIONS_BY_MODULE.update(
     {
         "skbase.base._clone_base": {"_check_clone", "_clone"},
-        "skbase.base._clone_plugins": ("_default_clone",),
+        "skbase.base._clone_plugins": (
+            "_default_clone",
+            "_get_sklearn_clone",
+            "_is_sklearn_present",
+        ),
         "skbase.base._pretty_printing._object_html_repr": (
             "_get_visual_block",
             "_object_html_repr",
@@ -208,20 +215,22 @@ SKBASE_FUNCTIONS_BY_MODULE.update(
         ),
         "skbase.base._pretty_printing._pprint": ("_changed_params", "_safe_repr"),
         "skbase.lookup._lookup": (
+            "all_objects",
+            "get_package_metadata",
+            "_check_object_types",
+            "_coerce_to_tuple",
             "_determine_module_path",
+            "_filter_by_tags",
+            "_filter_by_class",
+            "_get_members_uw",
+            "_get_module_info",
             "_get_return_tags",
+            "_import_module",
             "_is_ignored_module",
-            "all_objects",
             "_is_non_public_module",
-            "get_package_metadata",
             "_make_dataframe",
             "_walk",
-            "_filter_by_tags",
-            "_filter_by_class",
-            "_import_module",
-            "_check_object_types",
-            "_get_module_info",
-            "_coerce_to_tuple",
+            "_walk_and_retrieve_all_objs",
         ),
         "skbase.testing.utils.inspect": ("_get_args",),
         "skbase.utils._check": ("_is_scalar_nan",),
@@ -265,13 +274,15 @@ SKBASE_FUNCTIONS_BY_MODULE.update(
             "deep_equals_custom",
         ),
         "skbase.utils.dependencies._dependencies": (
-            "_check_soft_dependencies",
-            "_check_python_version",
             "_check_env_marker",
             "_check_estimator_deps",
+            "_check_python_version",
+            "_check_soft_dependencies",
             "_get_pkg_version",
             "_get_installed_packages",
+            "_get_installed_packages_private",
             "_normalize_requirement",
+            "_normalize_version",
             "_raise_at_severity",
         ),
         "skbase.utils.random_state": (

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/tests/test_base.py

@@ -51,10 +51,7 @@ __all__ = [
     "test_clone",
     "test_clone_2",
     "test_clone_raises_error_for_nonconforming_objects",
-    "test_clone_param_is_none",
-    "test_clone_empty_array",
-    "test_clone_sparse_matrix",
-    "test_clone_nan",
+    "test_clone_none_and_empty_array_nan_sparse_matrix",
     "test_clone_estimator_types",
     "test_clone_class_rather_than_instance_raises_error",
     "test_clone_sklearn_composite",
@@ -1025,75 +1022,30 @@ def test_nested_config_after_clone_tags(clone_config):
     not _check_soft_dependencies("scikit-learn", severity="none"),
     reason="skip test if sklearn is not available",
 )  # sklearn is part of the dev dependency set, test should be executed with that
-def test_clone_param_is_none(fixture_class_parent: Type[Parent]):
-    """Test clone with keyword parameter set to None."""
-    from sklearn.base import clone
-
-    base_obj = fixture_class_parent(c=None)
-    new_base_obj = clone(base_obj)
-    new_base_obj2 = base_obj.clone()
-    assert base_obj.c is new_base_obj.c
-    assert base_obj.c is new_base_obj2.c
-
-
-@pytest.mark.skipif(
-    not _check_soft_dependencies("scikit-learn", severity="none"),
-    reason="skip test if sklearn is not available",
-)  # sklearn is part of the dev dependency set, test should be executed with that
-def test_clone_empty_array(fixture_class_parent: Type[Parent]):
-    """Test clone with keyword parameter is scipy sparse matrix.
-
-    This test is based on scikit-learn regression test to make sure clone
-    works with default parameter set to scipy sparse matrix.
-    """
-    from sklearn.base import clone
-
-    # Regression test for cloning estimators with empty arrays
-    base_obj = fixture_class_parent(c=np.array([]))
-    new_base_obj = clone(base_obj)
-    new_base_obj2 = base_obj.clone()
-    np.testing.assert_array_equal(base_obj.c, new_base_obj.c)
-    np.testing.assert_array_equal(base_obj.c, new_base_obj2.c)
-
-
-@pytest.mark.skipif(
-    not _check_soft_dependencies("scikit-learn", severity="none"),
-    reason="skip test if sklearn is not available",
-)  # sklearn is part of the dev dependency set, test should be executed with that
-def test_clone_sparse_matrix(fixture_class_parent: Type[Parent]):
-    """Test clone with keyword parameter is scipy sparse matrix.
-
-    This test is based on scikit-learn regression test to make sure clone
-    works with default parameter set to scipy sparse matrix.
-    """
-    from sklearn.base import clone
-
-    base_obj = fixture_class_parent(c=sp.csr_matrix(np.array([[0]])))
-    new_base_obj = clone(base_obj)
-    new_base_obj2 = base_obj.clone()
-    np.testing.assert_array_equal(base_obj.c, new_base_obj.c)
-    np.testing.assert_array_equal(base_obj.c, new_base_obj2.c)
-
-
-@pytest.mark.skipif(
-    not _check_soft_dependencies("scikit-learn", severity="none"),
-    reason="skip test if sklearn is not available",
-)  # sklearn is part of the dev dependency set, test should be executed with that
-def test_clone_nan(fixture_class_parent: Type[Parent]):
-    """Test clone with keyword parameter is np.nan.
-
-    This test is based on scikit-learn regression test to make sure clone
-    works with default parameter set to np.nan.
-    """
+@pytest.mark.parametrize(
+    "c_value",
+    [
+        None,
+        np.array([]),
+        sp.csr_matrix(np.array([[0]])),
+        np.nan,
+    ],
+)
+def test_clone_none_and_empty_array_nan_sparse_matrix(
+    fixture_class_parent: Type[Parent], c_value
+):
     from sklearn.base import clone
 
-    # Regression test for cloning estimators with default parameter as np.nan
-    base_obj = fixture_class_parent(c=np.nan)
+    base_obj = fixture_class_parent(c=c_value)
     new_base_obj = clone(base_obj)
     new_base_obj2 = base_obj.clone()
 
-    assert base_obj.c is new_base_obj.c
-    assert base_obj.c is new_base_obj2.c
+    if isinstance(base_obj.c, (np.ndarray, type(sp.csr_matrix(np.array([[0]]))))):
+        np.testing.assert_array_equal(base_obj.c, new_base_obj.c)
+        np.testing.assert_array_equal(base_obj.c, new_base_obj2.c)
+    else:
+        assert base_obj.c is new_base_obj.c
+        assert base_obj.c is new_base_obj2.c
 
 
 def test_clone_estimator_types(fixture_class_parent: Type[Parent]):

{scikit_base-0.12.0 → scikit_base-0.12.3}/skbase/utils/deep_equals/_deep_equals.py

@@ -267,6 +267,7 @@ def _pandas_equals(x, y, return_msg=False, deep_equals=None):
                 return ret(
                     False, f".dtypes, x.dtypes = {x.dtypes} != y.dtypes = {y.dtypes}"
                 )
+        return ret(x.equals(y), "index.equals, x = {} != y = {}", [x, y])
     else:
         raise RuntimeError(
             f"Unexpected type of pandas object in _pandas_equals: type(x)={type(x)},"