scientiflow-cli 0.4.11__tar.gz → 0.4.13__tar.gz

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Files changed (30) hide show
  1. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/PKG-INFO +1 -1
  2. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/pyproject.toml +1 -1
  3. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/executor.py +4 -1
  4. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/file_manager.py +2 -5
  5. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/LICENSE.md +0 -0
  6. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/README.md +0 -0
  7. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/__init__.py +0 -0
  8. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/__main__.py +0 -0
  9. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/cli/__init__.py +0 -0
  10. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/cli/auth_utils.py +0 -0
  11. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/cli/login.py +0 -0
  12. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/cli/logout.py +0 -0
  13. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/main.py +0 -0
  14. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/pipeline/__init__.py +0 -0
  15. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/pipeline/container_manager.py +0 -0
  16. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/pipeline/decode_and_execute.py +0 -0
  17. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/pipeline/get_jobs.py +0 -0
  18. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/__init__.py +0 -0
  19. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/auth_service.py +0 -0
  20. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/base_directory.py +0 -0
  21. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/modes.py +0 -0
  22. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/request_handler.py +0 -0
  23. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/rich_printer.py +0 -0
  24. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/services/status_updater.py +0 -0
  25. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/__init__.py +0 -0
  26. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/config.py +0 -0
  27. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/encryption.py +0 -0
  28. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/logger.py +0 -0
  29. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/mock.py +0 -0
  30. {scientiflow_cli-0.4.11 → scientiflow_cli-0.4.13}/scientiflow_cli/utils/singularity.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: scientiflow-cli
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- Version: 0.4.11
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+ Version: 0.4.13
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  Summary: CLI tool for scientiflow. This application runs on the client side, decodes pipelines, and executes them in the configured order!
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  License: Proprietary
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  Author: ScientiFlow
@@ -3,7 +3,7 @@ mode = "prod"
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  [tool.poetry]
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  name = "scientiflow-cli"
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- version = "0.4.11"
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+ version = "0.4.13"
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  description = "CLI tool for scientiflow. This application runs on the client side, decodes pipelines, and executes them in the configured order!"
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  authors = ["ScientiFlow <scientiflow@gmail.com>"]
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  license = "Proprietary"
@@ -37,6 +37,9 @@ def execute_jobs(job_ids: list[int] = None, parallel: bool = False, is_cloud: bo
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  if matching_jobs:
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  if is_cloud:
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  for job in matching_jobs:
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+ job['project_title'] = job['project']['id'] + '_' + job['project']['project_title']
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+ if 'server' not in job or job['server'] is None:
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+ job['server'] = {'base_directory':None}
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  job['server']['base_directory'] = get_base_directory()
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  jobs_to_execute.extend(matching_jobs)
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  else:
@@ -156,7 +159,7 @@ def execute_single_job(job: dict, is_cloud: bool = False) -> None:
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  if job_status != "running":
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  if job["new_job"] == 1:
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  # Initialize folders for the project / project_job
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- create_job_dirs(job, is_cloud)
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+ create_job_dirs(job)
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  # Fetch the files and folder from the backend
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  get_job_files(job)
@@ -37,12 +37,9 @@ def get_job_files(job: dict) -> None:
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  printer.print_success(f"[+] Files extracted to {str(project_dir_name).strip()}")
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- def create_job_dirs(job: dict, is_cloud: bool = False) -> None:
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+ def create_job_dirs(job: dict) -> None:
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  base_dir = Path(job['server']['base_directory'])
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- if is_cloud:
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- project_dir = base_dir / (str(job['project']['id'])+"_"+job['project']['project_title'])
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- else:
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- project_dir = base_dir / job['project']['project_title']
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+ project_dir = base_dir / job['project']['project_title']
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  job_dir = project_dir / job['project_job']['job_directory']
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  job_dir.mkdir(parents=True, exist_ok=True)
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