scdesigner 0.0.1__tar.gz → 0.0.3__tar.gz

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  1. {scdesigner-0.0.1 → scdesigner-0.0.3}/PKG-INFO +3 -1
  2. {scdesigner-0.0.1 → scdesigner-0.0.3}/pyproject.toml +4 -2
  3. {scdesigner-0.0.1 → scdesigner-0.0.3}/.gitignore +0 -0
  4. {scdesigner-0.0.1 → scdesigner-0.0.3}/README.md +0 -0
  5. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/__init__.py +0 -0
  6. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/data/__init__.py +0 -0
  7. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/data/formula.py +0 -0
  8. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/data/group.py +0 -0
  9. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/data/sparse.py +0 -0
  10. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/diagnose/__init__.py +0 -0
  11. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/diagnose/aic_bic.py +0 -0
  12. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/diagnose/plot.py +0 -0
  13. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/__init__.py +0 -0
  14. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/bernoulli.py +0 -0
  15. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/gaussian.py +0 -0
  16. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/gaussian_copula_factory.py +0 -0
  17. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/glm_factory.py +0 -0
  18. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/negbin.py +0 -0
  19. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/pnmf.py +0 -0
  20. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/poisson.py +0 -0
  21. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/zero_inflated_negbin.py +0 -0
  22. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/estimators/zero_inflated_poisson.py +0 -0
  23. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/format/__init__.py +0 -0
  24. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/format/format.py +0 -0
  25. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/format/print.py +0 -0
  26. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/__init__.py +0 -0
  27. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/bernoulli.py +0 -0
  28. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/composite.py +0 -0
  29. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/copula.py +0 -0
  30. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/formula.py +0 -0
  31. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/gaussian.py +0 -0
  32. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/kwargs.py +0 -0
  33. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/loader.py +0 -0
  34. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/marginal.py +0 -0
  35. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/negbin.py +0 -0
  36. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/positive_nonnegative_matrix_factorization.py +0 -0
  37. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/scd3.py +0 -0
  38. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/scd3_instances.py +0 -0
  39. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/simulator.py +0 -0
  40. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/standard_covariance.py +0 -0
  41. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/transform.py +0 -0
  42. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/minimal/zero_inflated_negbin.py +0 -0
  43. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/__init__.py +0 -0
  44. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/bernoulli.py +0 -0
  45. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/gaussian.py +0 -0
  46. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/negbin.py +0 -0
  47. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/poisson.py +0 -0
  48. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/zero_inflated_negbin.py +0 -0
  49. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/predictors/zero_inflated_poisson.py +0 -0
  50. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/__init__.py +0 -0
  51. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/bernoulli.py +0 -0
  52. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/gaussian.py +0 -0
  53. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/glm_factory.py +0 -0
  54. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/negbin.py +0 -0
  55. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/poisson.py +0 -0
  56. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/zero_inflated_negbin.py +0 -0
  57. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/samplers/zero_inflated_poisson.py +0 -0
  58. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/simulators/__init__.py +0 -0
  59. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/simulators/composite_regressor.py +0 -0
  60. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/simulators/glm_simulator.py +0 -0
  61. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/simulators/pnmf_regression.py +0 -0
  62. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/__init__.py +0 -0
  63. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/amplify.py +0 -0
  64. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/mask.py +0 -0
  65. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/nullify.py +0 -0
  66. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/split.py +0 -0
  67. {scdesigner-0.0.1 → scdesigner-0.0.3}/src/scdesigner/transform/substitute.py +0 -0
  68. {scdesigner-0.0.1 → scdesigner-0.0.3}/tests/__init__.py +0 -0
  69. {scdesigner-0.0.1 → scdesigner-0.0.3}/tests/test_negative_binomial.py +0 -0
  70. {scdesigner-0.0.1 → scdesigner-0.0.3}/tests/test_simulator.py +0 -0
{scdesigner-0.0.1 → scdesigner-0.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: scdesigner
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- Version: 0.0.1
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+ Version: 0.0.3
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  Summary: Interactive simulation for rigorous and transparent multi-omics analysis.
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  Project-URL: Homepage, https://github.com/krisrs1128/scDesigner/
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  Project-URL: Issues, https://github.com/krisrs1128/scDesigner/Issues/
@@ -9,7 +9,9 @@ Classifier: License :: OSI Approved :: MIT License
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  Classifier: Operating System :: OS Independent
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  Classifier: Programming Language :: Python :: 3
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  Requires-Python: >=3.8
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+ Requires-Dist: anndata
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  Requires-Dist: formulaic
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+ Requires-Dist: lightning
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  Requires-Dist: numpy
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  Requires-Dist: pandas
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  Requires-Dist: rich
{scdesigner-0.0.1 → scdesigner-0.0.3}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "scdesigner"
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- version = "0.0.1"
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+ version = "0.0.3"
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  authors = [
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  { name="Kris Sankaran", email="ksankaran@wisc.edu" },
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  ]
@@ -13,7 +13,9 @@ classifiers = [
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  "Operating System :: OS Independent",
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  ]
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  dependencies = [
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+ "anndata",
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  "formulaic",
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+ "lightning",
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  "numpy",
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  "pandas",
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  "rich",
@@ -28,7 +30,7 @@ Homepage = "https://github.com/krisrs1128/scDesigner/"
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  Issues = "https://github.com/krisrs1128/scDesigner/Issues/"
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  [build-system]
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- requires = ["formulaic", "pandas", "numpy", "scipy", "hatchling", "torch", "rich"]
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+ requires = ["anndata", "formulaic", "pandas", "numpy", "lightning", "scipy", "hatchling", "torch", "rich"]
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  build-backend = "hatchling.build"
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  [tool.hatch.metadata]
{scdesigner-0.0.1 → scdesigner-0.0.3}/.gitignore RENAMED
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{scdesigner-0.0.1 → scdesigner-0.0.3}/README.md RENAMED
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{scdesigner-0.0.1 → scdesigner-0.0.3}/tests/__init__.py RENAMED
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