scdataloader 2.0.5__tar.gz → 2.0.7__tar.gz

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Files changed (16) hide show
  1. {scdataloader-2.0.5 → scdataloader-2.0.7}/PKG-INFO +1 -1
  2. {scdataloader-2.0.5 → scdataloader-2.0.7}/pyproject.toml +1 -1
  3. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/utils.py +11 -2
  4. {scdataloader-2.0.5 → scdataloader-2.0.7}/.gitignore +0 -0
  5. {scdataloader-2.0.5 → scdataloader-2.0.7}/LICENSE +0 -0
  6. {scdataloader-2.0.5 → scdataloader-2.0.7}/README.md +0 -0
  7. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/__init__.py +0 -0
  8. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/__main__.py +0 -0
  9. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/base.py +0 -0
  10. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/collator.py +0 -0
  11. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/config.py +0 -0
  12. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/data.json +0 -0
  13. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/data.py +0 -0
  14. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/datamodule.py +0 -0
  15. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/mapped.py +0 -0
  16. {scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/preprocess.py +0 -0
{scdataloader-2.0.5 → scdataloader-2.0.7}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: scdataloader
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- Version: 2.0.5
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+ Version: 2.0.7
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  Summary: a dataloader for single cell data in lamindb
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  Project-URL: repository, https://github.com/jkobject/scDataLoader
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  Author-email: jkobject <jkobject@gmail.com>
{scdataloader-2.0.5 → scdataloader-2.0.7}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "scdataloader"
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- version = "2.0.5"
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+ version = "2.0.7"
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  description = "a dataloader for single cell data in lamindb"
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  authors = [
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  {name = "jkobject", email = "jkobject@gmail.com"}
{scdataloader-2.0.5 → scdataloader-2.0.7}/scdataloader/utils.py RENAMED
@@ -454,9 +454,18 @@ def _adding_scbasecamp_genes(
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  if len(species) == 0:
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  species = set(
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  bt.Organism.using("laminlabs/arc-virtual-cell-atlas").df().ontology_id
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- )
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- -set(["NCBITaxon:10090", "NCBITaxon:9606"])
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+ ) - set(["NCBITaxon:10090", "NCBITaxon:9606"])
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  species = list(species)
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+ for i in set(
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+ bt.Organism.using("laminlabs/arc-virtual-cell-atlas").df().ontology_id
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+ ) - set(bt.Organism.filter().df().ontology_id):
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+ print(i)
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+ rec = (
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+ bt.Organism.using("laminlabs/arc-virtual-cell-atlas")
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+ .filter(ontology_id=i)
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+ .first()
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+ )
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+ rec.save()
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  if len(bt.Organism.filter(ontology_id="NCBITaxon:9593")) == 0:
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  bt.Organism(
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  name="gorilla gorilla",
{scdataloader-2.0.5 → scdataloader-2.0.7}/.gitignore RENAMED
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{scdataloader-2.0.5 → scdataloader-2.0.7}/LICENSE RENAMED
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{scdataloader-2.0.5 → scdataloader-2.0.7}/README.md RENAMED
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