scdataloader 1.0.6__tar.gz → 1.1.3__tar.gz

{scdataloader-1.0.6 → scdataloader-1.1.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scdataloader
-Version: 1.0.6
+Version: 1.1.3
 Summary: a dataloader for single cell data in lamindb
 Home-page: https://github.com/jkobject/scDataLoader
 License: GPL3
@@ -13,7 +13,7 @@ Classifier: Programming Language :: Python :: 3.10
 Provides-Extra: dev
 Requires-Dist: anndata
 Requires-Dist: biomart
-Requires-Dist: bionty (==0.48.0)
+Requires-Dist: bionty (==0.49.0)
 Requires-Dist: black (>=23.10.1,<24.0.0) ; extra == "dev"
 Requires-Dist: cellxgene-census
 Requires-Dist: coverage (>=7.3.2,<8.0.0) ; extra == "dev"
@@ -23,7 +23,7 @@ Requires-Dist: flake8 (>=6.1.0,<7.0.0) ; extra == "dev"
 Requires-Dist: gitchangelog (>=3.0.4,<4.0.0) ; extra == "dev"
 Requires-Dist: ipykernel
 Requires-Dist: isort (>=5.12.0,<6.0.0) ; extra == "dev"
-Requires-Dist: lamindb (==0.75.1)
+Requires-Dist: lamindb (==0.76.3)
 Requires-Dist: leidenalg
 Requires-Dist: lightning
 Requires-Dist: matplotlib

{scdataloader-1.0.6 → scdataloader-1.1.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "scdataloader"
-version = "1.0.6"
+version = "1.1.3"
 description = "a dataloader for single cell data in lamindb"
 authors = ["jkobject"]
 license = "GPL3"
@@ -10,8 +10,8 @@ keywords = ["scRNAseq", "dataloader", "pytorch", "lamindb", "scPRINT"]
 
 [tool.poetry.dependencies]
 python = "3.10.*"
-lamindb = "0.75.1"
-bionty = "0.48.0"
+lamindb = "0.76.3"
+bionty = "0.49.0"
 cellxgene-census = "*"
 torch = "*"
 lightning = "*"

scdataloader-1.1.3/scdataloader/VERSION

@@ -0,0 +1 @@
+1.1.3

{scdataloader-1.0.6 → scdataloader-1.1.3}/scdataloader/collator.py

@@ -161,7 +161,10 @@ class Collator:
                 raise ValueError("how must be either most expr or random expr")
             if (
                 (self.add_zero_genes > 0) or (self.max_len > len(nnz_loc))
-            ) and self.how not in ["all", "some"]:
+            ) and self.how not in [
+                "all",
+                "some",
+            ]:
                 zero_loc = np.where(expr == 0)[0]
                 zero_loc = zero_loc[
                     np.random.choice(

scdataloader-1.0.6/scdataloader/VERSION

@@ -1 +0,0 @@
-1.0.5