scatrans 0.9.5.dev0__tar.gz → 0.9.6.dev0__tar.gz

{scatrans-0.9.5.dev0 → scatrans-0.9.6.dev0}/.github/workflows/publish.yml

@@ -1,9 +1,8 @@
 name: Publish to PyPI
 
 on:
-  push:
-    tags:
-      - "v*"
+  # Publish only when a GitHub Release is published (avoids duplicate runs when
+  # "Create release" also creates a tag — push:tags would fire a second job).
   release:
     types: [published]
   workflow_dispatch:
@@ -13,6 +12,10 @@ on:
         required: false
         default: ""
 
+concurrency:
+  group: publish-pypi-${{ github.event.release.tag_name || github.run_id }}
+  cancel-in-progress: false
+
 jobs:
   build:
     name: Build distribution 📦
@@ -50,14 +53,13 @@ jobs:
     needs: build
     runs-on: ubuntu-latest
 
-    # Required for Trusted Publishing (OIDC) - no API token secret needed
+    # Trusted Publishing (OIDC). Configure the "pypi" environment in repo
+    # Settings → Environments with required reviewers before first release.
     permissions:
       id-token: write
 
-    # Recommended: tie to a protected GitHub Environment (create "pypi" environment in repo settings)
-    # You can add required reviewers or branch restrictions in the environment settings.
-    # environment:
-    #   name: pypi
+    environment:
+      name: pypi
 
     steps:
       - name: Download all dists
@@ -71,4 +73,4 @@ jobs:
         # For publishing to TestPyPI instead (for testing the workflow):
         # with:
         #   repository-url: https://test.pypi.org/legacy/
-        #   verbose: true
+        #   verbose: true

{scatrans-0.9.5.dev0 → scatrans-0.9.6.dev0}/.gitignore

@@ -167,6 +167,9 @@ Thumbs.db
 gene_features.parquet
 *_gene_features.parquet
 *_features.parquet
+# Bundled package data (must be tracked for CI / wheels)
+!src/scatrans/data/
+!src/scatrans/data/*.parquet
 # Temporary analysis outputs
 *.pdf
 *.png

{scatrans-0.9.5.dev0 → scatrans-0.9.6.dev0}/LICENSE

@@ -199,3 +199,13 @@
    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and
    limitations under the License.
+
+   =====================================================================
+   ADDITIONAL NOTICE — BUNDLED DATA FILES (NOT COVERED BY APACHE-2.0)
+   =====================================================================
+
+   Files under src/scatrans/data/ shipped with the package may include
+   third-party-derived gene sets (GO, KEGG). Those files are NOT licensed
+   under Apache-2.0. See src/scatrans/data/DATA_LICENSES.md for terms,
+   provenance, and redistribution restrictions (especially KEGG:
+   https://www.kegg.jp/kegg/legal.html).