scatlaspy 0.0.1__tar.gz

scatlaspy-0.0.1/.gitignore

@@ -0,0 +1,7 @@
+__pycache__/
+*.py[cod]
+*.egg-info/
+.pytest_cache/
+build/
+dist/
+.venv/

scatlaspy-0.0.1/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Han Xu
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

scatlaspy-0.0.1/PKG-INFO

@@ -0,0 +1,52 @@
+Metadata-Version: 2.4
+Name: scatlaspy
+Version: 0.0.1
+Summary: A disk-resident single-cell atlas analysis platform.
+Project-URL: Homepage, https://github.com/GaoLabXDU/scatlaspy
+Project-URL: Repository, https://github.com/GaoLabXDU/scatlaspy
+Project-URL: Issues, https://github.com/GaoLabXDU/scatlaspy/issues
+Author-email: Han Xu <hxu10670@gmail.com>
+Maintainer-email: Han Xu <hxu10670@gmail.com>
+License-Expression: MIT
+License-File: LICENSE
+Keywords: atlas-scale analysis,bioinformatics,omics,single-cell,single-cell atlas
+Classifier: Development Status :: 1 - Planning
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+
+# scAtlasPy
+
+**scAtlasPy** is a disk-resident single-cell atlas analysis platform designed for compressed atlas storage, high-throughput random data access, and scalable analysis under limited memory conditions.
+
+This is an initial placeholder release for the `scatlaspy` Python package. Full functionality and documentation will be released with the main scAtlasPy project.
+
+## Installation
+
+```bash
+pip install scatlaspy
+```
+
+## Quick check
+
+```python
+import scatlaspy as sp
+print(sp.__version__)
+```
+
+Command line:
+
+```bash
+scatlaspy --version
+```
+
+## Project status
+
+scAtlasPy is under active development.

scatlaspy-0.0.1/README.md

@@ -0,0 +1,28 @@
+# scAtlasPy
+
+**scAtlasPy** is a disk-resident single-cell atlas analysis platform designed for compressed atlas storage, high-throughput random data access, and scalable analysis under limited memory conditions.
+
+This is an initial placeholder release for the `scatlaspy` Python package. Full functionality and documentation will be released with the main scAtlasPy project.
+
+## Installation
+
+```bash
+pip install scatlaspy
+```
+
+## Quick check
+
+```python
+import scatlaspy as sp
+print(sp.__version__)
+```
+
+Command line:
+
+```bash
+scatlaspy --version
+```
+
+## Project status
+
+scAtlasPy is under active development.

scatlaspy-0.0.1/pyproject.toml

@@ -0,0 +1,47 @@
+[build-system]
+requires = ["hatchling>=1.26"]
+build-backend = "hatchling.build"
+
+[project]
+name = "scatlaspy"
+version = "0.0.1"
+description = "A disk-resident single-cell atlas analysis platform."
+readme = "README.md"
+requires-python = ">=3.9"
+license = "MIT"
+authors = [
+  { name = "Han Xu", email = "hxu10670@gmail.com" }
+]
+maintainers = [
+  { name = "Han Xu", email = "hxu10670@gmail.com" }
+]
+keywords = [
+  "single-cell",
+  "single-cell atlas",
+  "bioinformatics",
+  "omics",
+  "atlas-scale analysis"
+]
+classifiers = [
+  "Development Status :: 1 - Planning",
+  "Intended Audience :: Science/Research",
+  "License :: OSI Approved :: MIT License",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
+]
+dependencies = []
+
+[project.urls]
+Homepage = "https://github.com/GaoLabXDU/scatlaspy"
+Repository = "https://github.com/GaoLabXDU/scatlaspy"
+Issues = "https://github.com/GaoLabXDU/scatlaspy/issues"
+
+[project.scripts]
+scatlaspy = "scatlaspy.cli:main"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/scatlaspy"]

scatlaspy-0.0.1/src/scatlaspy/__init__.py

@@ -0,0 +1,13 @@
+"""scAtlasPy: disk-resident single-cell atlas analysis platform."""
+
+from ._version import __version__
+
+__all__ = ["__version__", "about"]
+
+
+def about() -> str:
+    """Return a short package description."""
+    return (
+        "scAtlasPy is a disk-resident single-cell atlas analysis platform "
+        "for compressed storage, random data access, and atlas-scale analysis."
+    )

scatlaspy-0.0.1/src/scatlaspy/_version.py

@@ -0,0 +1 @@
+__version__ = "0.0.1"

scatlaspy-0.0.1/src/scatlaspy/cli.py

@@ -0,0 +1,31 @@
+"""Minimal command-line interface for scAtlasPy."""
+
+from __future__ import annotations
+
+import argparse
+
+from . import __version__, about
+
+
+def build_parser() -> argparse.ArgumentParser:
+    parser = argparse.ArgumentParser(
+        prog="scatlaspy",
+        description="scAtlasPy: disk-resident single-cell atlas analysis platform.",
+    )
+    parser.add_argument(
+        "--version",
+        action="version",
+        version=f"scatlaspy {__version__}",
+    )
+    return parser
+
+
+def main(argv: list[str] | None = None) -> int:
+    parser = build_parser()
+    parser.parse_args(argv)
+    print(about())
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

scatlaspy-0.0.1/tests/test_import.py

@@ -0,0 +1,5 @@
+def test_import():
+    import scatlaspy
+
+    assert scatlaspy.__version__ == "0.0.1"
+    assert "scAtlasPy" in scatlaspy.about()