sapiopycommons 2025.9.16a754__tar.gz → 2025.10.30a800__tar.gz

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  1. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/PKG-INFO +1 -1
  2. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/pyproject.toml +1 -1
  3. sapiopycommons-2025.9.16a754/src/sapiopycommons/ai/tool_service_base.py → sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/agent_service_base.py +366 -159
  4. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/converter_service_base.py +36 -5
  5. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/external_credentials.py +128 -0
  6. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2.py +41 -0
  7. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2.pyi +35 -0
  8. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2_grpc.py +24 -0
  9. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.py +61 -0
  10. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi +10 -4
  11. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py +79 -0
  12. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi +14 -6
  13. sapiopycommons-2025.10.30a800/src/sapiopycommons/ai/request_validation.py +478 -0
  14. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/server.py +21 -11
  15. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/test_client.py +142 -31
  16. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_util.py +128 -1
  17. sapiopycommons-2025.10.30a800/src/sapiopycommons/files/temp_files.py +82 -0
  18. sapiopycommons-2025.10.30a800/tests/file_compression_tests.py +39 -0
  19. sapiopycommons-2025.9.16a754/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.py +0 -59
  20. sapiopycommons-2025.9.16a754/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py +0 -77
  21. sapiopycommons-2025.9.16a754/src/sapiopycommons/ai/tool_of_tools.py +0 -917
  22. sapiopycommons-2025.9.16a754/src/sapiopycommons/files/temp_files.py +0 -51
  23. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/.gitignore +0 -0
  24. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/LICENSE +0 -0
  25. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/README.md +0 -0
  26. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/__init__.py +0 -0
  27. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/__init__.py +0 -0
  28. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py +0 -0
  29. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi +0 -0
  30. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py +0 -0
  31. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py +0 -0
  32. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi +0 -0
  33. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py +0 -0
  34. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py +0 -0
  35. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi +0 -0
  36. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py +0 -0
  37. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py +0 -0
  38. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi +0 -0
  39. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py +0 -0
  40. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py +0 -0
  41. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.py +0 -0
  42. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi +0 -0
  43. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py +0 -0
  44. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_pb2.py +0 -0
  45. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_pb2.pyi +0 -0
  46. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py +0 -0
  47. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py +0 -0
  48. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi +0 -0
  49. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py +0 -0
  50. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py +0 -0
  51. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py +0 -0
  52. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi +0 -0
  53. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py +0 -0
  54. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/ai/protobuf_utils.py +0 -0
  55. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/callbacks/__init__.py +0 -0
  56. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/callbacks/callback_util.py +0 -0
  57. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/callbacks/field_builder.py +0 -0
  58. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
  59. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/chem/Molecules.py +0 -0
  60. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/chem/__init__.py +0 -0
  61. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/customreport/__init__.py +0 -0
  62. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
  63. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/customreport/column_builder.py +0 -0
  64. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
  65. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/customreport/term_builder.py +0 -0
  66. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/datatype/__init__.py +0 -0
  67. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/datatype/attachment_util.py +0 -0
  68. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/datatype/data_fields.py +0 -0
  69. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
  70. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/__init__.py +0 -0
  71. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/experiment_cache.py +0 -0
  72. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/experiment_handler.py +0 -0
  73. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
  74. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
  75. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/experiment_tags.py +0 -0
  76. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/plate_designer.py +0 -0
  77. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/eln/step_creation.py +0 -0
  78. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/__init__.py +0 -0
  79. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/assay_plate_reader.py +0 -0
  80. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/complex_data_loader.py +0 -0
  81. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_bridge.py +0 -0
  82. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
  83. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_data_handler.py +0 -0
  84. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_text_converter.py +0 -0
  85. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_validator.py +0 -0
  86. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/files/file_writer.py +0 -0
  87. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
  88. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
  89. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/__init__.py +0 -0
  90. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/accession_service.py +0 -0
  91. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/aliases.py +0 -0
  92. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/audit_log.py +0 -0
  93. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/custom_report_util.py +0 -0
  94. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/data_structure_util.py +0 -0
  95. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/directive_util.py +0 -0
  96. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/exceptions.py +0 -0
  97. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/html_formatter.py +0 -0
  98. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/popup_util.py +0 -0
  99. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/sapio_links.py +0 -0
  100. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/storage_util.py +0 -0
  101. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/general/time_util.py +0 -0
  102. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/multimodal/multimodal.py +0 -0
  103. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
  104. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/processtracking/__init__.py +0 -0
  105. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
  106. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/processtracking/endpoints.py +0 -0
  107. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/recordmodel/__init__.py +0 -0
  108. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
  109. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/rules/__init__.py +0 -0
  110. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
  111. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
  112. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/samples/aliquot.py +0 -0
  113. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  114. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
  115. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/webhook/__init__.py +0 -0
  116. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/webhook/webhook_context.py +0 -0
  117. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
  118. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
  119. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
  120. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/_do_not_add_init_py_here +0 -0
  121. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/accession_test.py +0 -0
  122. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/aliquot_test.py +0 -0
  123. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/assay_plate_reader/BMGLabtech96.txt +0 -0
  124. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/assay_plate_reader/assay_plate_processing_test.py +0 -0
  125. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/bio_reg_test.py +0 -0
  126. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/chem_test.py +0 -0
  127. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/chem_test_curation_queue.py +0 -0
  128. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/curation_queue_test.sdf +0 -0
  129. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/data_type_models.py +0 -0
  130. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/flowcyto/8_color_ICS.wsp +0 -0
  131. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/flowcyto_test.py +0 -0
  132. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/kappa.chains.fasta +0 -0
  133. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/mafft_test.py +0 -0
  134. {sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/tests/test.gb +0 -0
{sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/PKG-INFO RENAMED
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  Metadata-Version: 2.3
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  Name: sapiopycommons
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- Version: 2025.9.16a754
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  Summary: Official Sapio Python API Utilities Package
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  Project-URL: Homepage, https://github.com/sapiosciences
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  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
{sapiopycommons-2025.9.16a754 → sapiopycommons-2025.10.30a800}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "sapiopycommons"
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- version='2025.09.16a754'
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+ version='2025.10.30a800'
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  authors = [
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  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },