sapiopycommons 2025.8.20a713__tar.gz → 2025.8.22a715__tar.gz
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- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/PKG-INFO +1 -1
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/pyproject.toml +1 -1
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/test_client.py +47 -30
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/.gitignore +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/LICENSE +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/README.md +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/converter_service_base.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/protobuf_utils.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/server.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/ai/tool_service_base.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/callbacks/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/callbacks/callback_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/callbacks/field_builder.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/chem/Molecules.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/chem/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/customreport/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/customreport/column_builder.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/customreport/term_builder.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/datatype/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/datatype/attachment_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/datatype/data_fields.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/experiment_cache.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/experiment_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/experiment_tags.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/plate_designer.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/eln/step_creation.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/complex_data_loader.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_bridge.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_data_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_validator.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/files/file_writer.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/accession_service.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/aliases.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/audit_log.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/custom_report_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/data_structure_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/directive_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/exceptions.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/html_formatter.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/popup_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/sapio_links.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/storage_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/general/time_util.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/multimodal/multimodal.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/processtracking/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/processtracking/endpoints.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/recordmodel/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/rules/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/samples/aliquot.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/webhook/__init__.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/webhook/webhook_context.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/_do_not_add_init_py_here +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/accession_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/aliquot_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/bio_reg_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/chem_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/chem_test_curation_queue.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/curation_queue_test.sdf +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/data_type_models.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto/8_color_ICS.wsp +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/flowcyto_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/kappa.chains.fasta +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/mafft_test.py +0 -0
- {sapiopycommons-2025.8.20a713 → sapiopycommons-2025.8.22a715}/tests/test.gb +0 -0
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Metadata-Version: 2.3
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Name: sapiopycommons
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Version: 2025.8.
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Version: 2025.8.22a715
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Summary: Official Sapio Python API Utilities Package
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Project-URL: Homepage, https://github.com/sapiosciences
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Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
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ret_val += f"JSON Output: {sum(len(x) for x in self.json_output)} item(s) across {len(self.json_output)} outputs\n"
|
|
86
|
+
for i, output in enumerate(self.json_output, start=1):
|
|
87
|
+
output: list[Any]
|
|
88
|
+
ret_val += f"\tJSON Output {i}:\n"
|
|
89
|
+
for json_obj in output:
|
|
90
|
+
ret_val += f"\t\t"
|
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91
|
+
ret_val += json.dumps(json_obj, indent=2).replace("\n", "\n\t\t") + "\n"
|
|
92
|
+
|
|
93
|
+
ret_val += f"Text Output: {sum(len(x) for x in self.text_output)} item(s) across {len(self.text_output)} outputs\n"
|
|
94
|
+
for i, output in enumerate(self.text_output, start=1):
|
|
95
|
+
output: list[str]
|
|
96
|
+
ret_val += f"\tText Output {i}:\n"
|
|
97
|
+
for text in output:
|
|
98
|
+
ret_val += f"\t\t{text}\n"
|
|
88
99
|
|
|
89
100
|
ret_val += f"New Records: {len(self.new_records)} item(s)\n"
|
|
90
101
|
for record in self.new_records:
|
|
@@ -277,14 +288,20 @@ class TestClient:
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277
288
|
for item in response.output:
|
|
278
289
|
container = item.item_container
|
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279
290
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280
|
-
|
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281
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-
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|
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|
-
|
|
291
|
+
if container.HasField("binary_container"):
|
|
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|
+
results.binary_output.append(list(container.binary_container.items))
|
|
293
|
+
elif container.HasField("csv_container"):
|
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|
+
csv_output: list[dict[str, Any]] = []
|
|
295
|
+
for header in container.csv_container.header.cells:
|
|
296
|
+
output_row: dict[str, Any] = {}
|
|
297
|
+
for i, row in enumerate(container.csv_container.items):
|
|
298
|
+
output_row[header] = row.cells[i]
|
|
299
|
+
csv_output.append(output_row)
|
|
300
|
+
results.csv_output.append(csv_output)
|
|
301
|
+
elif container.HasField("json_container"):
|
|
302
|
+
results.json_output.append([json.loads(x) for x in container.json_container.items])
|
|
303
|
+
elif container.HasField("text_container"):
|
|
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|
+
results.text_output.append(list(container.text_container.items))
|
|
288
305
|
|
|
289
306
|
for record in response.new_records:
|
|
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307
|
field_map: dict[str, Any] = {x: ProtobufUtils.field_pbo_to_value(y) for x, y in record.fields.items()}
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