sapiopycommons 2025.8.15a705__tar.gz → 2025.8.18a708__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of sapiopycommons might be problematic. Click here for more details.

Files changed (127) hide show
  1. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/PKG-INFO +2 -2
  2. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/pyproject.toml +2 -2
  3. sapiopycommons-2025.8.18a708/src/sapiopycommons/ai/tool_of_tools.py +917 -0
  4. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/callbacks/callback_util.py +26 -16
  5. sapiopycommons-2025.8.18a708/src/sapiopycommons/files/assay_plate_reader.py +93 -0
  6. sapiopycommons-2025.8.18a708/src/sapiopycommons/files/file_text_converter.py +207 -0
  7. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/flowcyto/flow_cyto.py +2 -24
  8. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/accession_service.py +2 -28
  9. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/multimodal/multimodal.py +2 -24
  10. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/webhook/webservice_handlers.py +1 -1
  11. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/accession_test.py +1 -1
  12. sapiopycommons-2025.8.18a708/tests/assay_plate_reader/BMGLabtech96.txt +28 -0
  13. sapiopycommons-2025.8.18a708/tests/assay_plate_reader/assay_plate_processing_test.py +43 -0
  14. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/mafft_test.py +1 -1
  15. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.py +0 -43
  16. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.pyi +0 -31
  17. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2_grpc.py +0 -24
  18. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.py +0 -123
  19. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.pyi +0 -598
  20. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2_grpc.py +0 -24
  21. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/converter/proto/converter_pb2.py +0 -50
  22. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/converter/proto/converter_pb2.pyi +0 -61
  23. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/converter/proto/converter_pb2_grpc.py +0 -149
  24. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/item/proto/item_container_pb2.py +0 -55
  25. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/item/proto/item_container_pb2.pyi +0 -88
  26. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/item/proto/item_container_pb2_grpc.py +0 -24
  27. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.py +0 -45
  28. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.pyi +0 -42
  29. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_output_pb2_grpc.py +0 -24
  30. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_pb2.py +0 -43
  31. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_pb2.pyi +0 -43
  32. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/proto/step_pb2_grpc.py +0 -24
  33. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.py +0 -59
  34. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.pyi +0 -102
  35. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/script/proto/script_pb2_grpc.py +0 -153
  36. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.py +0 -41
  37. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.pyi +0 -35
  38. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2_grpc.py +0 -24
  39. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.py +0 -75
  40. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.pyi +0 -237
  41. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2_grpc.py +0 -154
  42. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.py +0 -39
  43. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.pyi +0 -32
  44. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2_grpc.py +0 -24
  45. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/converter_service_base.py +0 -116
  46. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/protobuf_utils.py +0 -504
  47. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/test_client.py +0 -338
  48. sapiopycommons-2025.8.15a705/src/sapiopycommons/ai/tool_service_base.py +0 -917
  49. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/.gitignore +0 -0
  50. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/LICENSE +0 -0
  51. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/README.md +0 -0
  52. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/__init__.py +0 -0
  53. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/ai/__init__.py +0 -0
  54. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/callbacks/__init__.py +0 -0
  55. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/callbacks/field_builder.py +0 -0
  56. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
  57. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/chem/Molecules.py +0 -0
  58. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/chem/__init__.py +0 -0
  59. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/customreport/__init__.py +0 -0
  60. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
  61. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/customreport/column_builder.py +0 -0
  62. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
  63. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/customreport/term_builder.py +0 -0
  64. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/datatype/__init__.py +0 -0
  65. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/datatype/attachment_util.py +0 -0
  66. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/datatype/data_fields.py +0 -0
  67. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
  68. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/__init__.py +0 -0
  69. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/experiment_cache.py +0 -0
  70. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/experiment_handler.py +0 -0
  71. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
  72. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
  73. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/experiment_tags.py +0 -0
  74. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/plate_designer.py +0 -0
  75. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/eln/step_creation.py +0 -0
  76. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/__init__.py +0 -0
  77. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/complex_data_loader.py +0 -0
  78. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_bridge.py +0 -0
  79. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
  80. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_data_handler.py +0 -0
  81. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_util.py +0 -0
  82. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_validator.py +0 -0
  83. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/files/file_writer.py +0 -0
  84. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
  85. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/__init__.py +0 -0
  86. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/aliases.py +0 -0
  87. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/audit_log.py +0 -0
  88. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/custom_report_util.py +0 -0
  89. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/data_structure_util.py +0 -0
  90. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/directive_util.py +0 -0
  91. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/exceptions.py +0 -0
  92. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/html_formatter.py +0 -0
  93. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/popup_util.py +0 -0
  94. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/sapio_links.py +0 -0
  95. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/storage_util.py +0 -0
  96. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/general/time_util.py +0 -0
  97. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
  98. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/processtracking/__init__.py +0 -0
  99. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
  100. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/processtracking/endpoints.py +0 -0
  101. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/recordmodel/__init__.py +0 -0
  102. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
  103. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/rules/__init__.py +0 -0
  104. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
  105. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
  106. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/samples/aliquot.py +0 -0
  107. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  108. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
  109. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/webhook/__init__.py +0 -0
  110. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/webhook/webhook_context.py +0 -0
  111. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
  112. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
  113. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/_do_not_add_init_py_here +0 -0
  114. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/aliquot_test.py +0 -0
  115. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/bio_reg_test.py +0 -0
  116. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/chem_test.py +0 -0
  117. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/chem_test_curation_queue.py +0 -0
  118. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/curation_queue_test.sdf +0 -0
  119. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/data_type_models.py +0 -0
  120. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
  121. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
  122. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
  123. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto/8_color_ICS.wsp +0 -0
  124. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
  125. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/flowcyto_test.py +0 -0
  126. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/kappa.chains.fasta +0 -0
  127. {sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/tests/test.gb +0 -0
{sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: sapiopycommons
3
- Version: 2025.8.15a705
3
+ Version: 2025.8.18a708
4
4
  Summary: Official Sapio Python API Utilities Package
5
5
  Project-URL: Homepage, https://github.com/sapiosciences
6
6
  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -17,7 +17,7 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
17
17
  Classifier: Topic :: Software Development :: Libraries :: Python Modules
18
18
  Requires-Python: >=3.10
19
19
  Requires-Dist: databind>=4.5
20
- Requires-Dist: sapiopylib>=2025.4.17.264
20
+ Requires-Dist: sapiopylib>=2025.7.31a279
21
21
  Description-Content-Type: text/markdown
22
22
 
23
23
 
{sapiopycommons-2025.8.15a705 → sapiopycommons-2025.8.18a708}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
6
6
  name = "sapiopycommons"
7
- version='2025.08.15a705'
7
+ version='2025.08.18a708'
8
8
  authors = [
9
9
  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
10
10
  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },
@@ -14,7 +14,7 @@ license = "MPL-2.0"
14
14
  readme = "README.md"
15
15
  requires-python = ">=3.10"
16
16
  dependencies = [
17
- 'sapiopylib>=2025.4.17.264', 'databind>=4.5'
17
+ 'sapiopylib>=2025.7.31a279', 'databind>=4.5'
18
18
  ]
19
19
  classifiers = [
20
20
  "Intended Audience :: Developers",