sapiopycommons 2025.7.22a651__tar.gz → 2025.7.23a659__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of sapiopycommons might be problematic. Click here for more details.
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/PKG-INFO +1 -1
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/pyproject.toml +1 -1
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/protobuf_utils.py +12 -13
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/test_client.py +20 -8
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/tool_service_base.py +1 -1
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/.gitignore +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/LICENSE +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/README.md +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_output_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/proto/step_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/script/proto/script_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.pyi +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2_grpc.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/callbacks/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/callbacks/callback_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/callbacks/field_builder.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/chem/Molecules.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/chem/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/customreport/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/customreport/column_builder.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/customreport/term_builder.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/datatype/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/datatype/attachment_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/datatype/data_fields.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/experiment_cache.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/experiment_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/experiment_tags.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/plate_designer.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/step_creation.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/complex_data_loader.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_bridge.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_data_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_validator.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_writer.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/accession_service.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/aliases.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/audit_log.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/custom_report_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/data_structure_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/directive_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/exceptions.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/html_formatter.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/popup_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/sapio_links.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/storage_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/time_util.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/multimodal/multimodal.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/processtracking/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/processtracking/endpoints.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/recordmodel/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/rules/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/samples/aliquot.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/webhook/__init__.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/webhook/webhook_context.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/_do_not_add_init_py_here +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/accession_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/aliquot_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/bio_reg_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/chem_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/chem_test_curation_queue.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/curation_queue_test.sdf +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/data_type_models.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/8_color_ICS.wsp +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/kappa.chains.fasta +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/mafft_test.py +0 -0
- {sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/test.gb +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.3
|
|
2
2
|
Name: sapiopycommons
|
|
3
|
-
Version: 2025.7.
|
|
3
|
+
Version: 2025.7.23a659
|
|
4
4
|
Summary: Official Sapio Python API Utilities Package
|
|
5
5
|
Project-URL: Homepage, https://github.com/sapiosciences
|
|
6
6
|
Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
|
|
@@ -435,24 +435,23 @@ class ProtobufUtils:
|
|
|
435
435
|
)
|
|
436
436
|
|
|
437
437
|
@staticmethod
|
|
438
|
-
def field_pbo_to_value(
|
|
438
|
+
def field_pbo_to_value(value: FieldValuePbo) -> FieldValue:
|
|
439
439
|
"""
|
|
440
|
-
Convert a StepRecordFieldValue to its corresponding Python value
|
|
440
|
+
Convert a StepRecordFieldValue to its corresponding Python value.
|
|
441
441
|
|
|
442
|
-
:param field: The VeloxFieldDefPbo or FieldTypePbo object for the given value.
|
|
443
442
|
:param value: The StepRecordFieldValue object.
|
|
444
443
|
:return: The corresponding Python value.
|
|
445
444
|
"""
|
|
446
|
-
|
|
447
|
-
|
|
448
|
-
|
|
449
|
-
|
|
450
|
-
|
|
451
|
-
|
|
452
|
-
|
|
453
|
-
|
|
454
|
-
|
|
455
|
-
|
|
445
|
+
if value.HasField("string_value"):
|
|
446
|
+
return value.string_value
|
|
447
|
+
elif value.HasField("int_value"):
|
|
448
|
+
return value.int_value
|
|
449
|
+
elif value.HasField("double_value"):
|
|
450
|
+
return value.double_value
|
|
451
|
+
elif value.HasField("bool_value"):
|
|
452
|
+
return value.bool_value
|
|
453
|
+
else:
|
|
454
|
+
return None
|
|
456
455
|
|
|
457
456
|
@staticmethod
|
|
458
457
|
def field_def_pbo_to_default_value(field_def: VeloxFieldDefPbo) -> FieldValue:
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/test_client.py
RENAMED
|
@@ -13,6 +13,8 @@ from sapiopycommons.ai.api.plan.tool.proto.tool_pb2 import ProcessStepResponsePb
|
|
|
13
13
|
ToolDetailsRequestPbo, ToolDetailsResponsePbo, ProcessStepResponseStatusPbo
|
|
14
14
|
from sapiopycommons.ai.api.plan.tool.proto.tool_pb2_grpc import ToolServiceStub
|
|
15
15
|
from sapiopycommons.ai.api.session.proto.sapio_conn_info_pb2 import SapioConnectionInfoPbo, SapioUserSecretTypePbo
|
|
16
|
+
from sapiopycommons.ai.protobuf_utils import ProtobufUtils
|
|
17
|
+
from sapiopycommons.general.aliases import FieldValue
|
|
16
18
|
|
|
17
19
|
|
|
18
20
|
# FR-47422: Created class.
|
|
@@ -32,7 +34,7 @@ class ToolOutput:
|
|
|
32
34
|
image_output: list[bytes]
|
|
33
35
|
text_output: list[str]
|
|
34
36
|
|
|
35
|
-
new_records: list[
|
|
37
|
+
new_records: list[dict[str, FieldValue]]
|
|
36
38
|
|
|
37
39
|
logs: list[str]
|
|
38
40
|
|
|
@@ -51,28 +53,35 @@ class ToolOutput:
|
|
|
51
53
|
ret_val += f"\tStatus: {self.status}\n"
|
|
52
54
|
ret_val += f"\tMessage: {self.message}\n"
|
|
53
55
|
ret_val += "-" * 25 + "\n"
|
|
56
|
+
|
|
54
57
|
ret_val += f"Binary Output: {len(self.binary_output)} item(s)\n"
|
|
55
58
|
for binary in self.binary_output:
|
|
56
59
|
ret_val += f"\t{len(binary)} byte(s)\n"
|
|
57
60
|
ret_val += f"\t{binary[:50]}...\n"
|
|
61
|
+
|
|
58
62
|
ret_val += f"CSV Output: {len(self.csv_output)} item(s)\n"
|
|
59
63
|
if self.csv_output:
|
|
60
64
|
ret_val += f"\tHeaders: {', '.join(self.csv_output[0].keys())}\n"
|
|
61
65
|
for i, csv_row in enumerate(self.csv_output):
|
|
62
66
|
ret_val += f"\t{i}: {', '.join(f'{v}' for k, v in csv_row.items())}\n"
|
|
67
|
+
|
|
63
68
|
ret_val += f"JSON Output: {len(self.json_output)} item(s)\n"
|
|
64
69
|
if self.json_output:
|
|
65
|
-
ret_val += f"
|
|
70
|
+
ret_val += f"{json.dumps(self.json_output, indent=2)}\n"
|
|
71
|
+
|
|
66
72
|
ret_val += f"Image Output: {len(self.image_output)} item(s)\n"
|
|
67
73
|
for image in self.image_output:
|
|
68
74
|
ret_val += f"\t{len(image)} bytes\n"
|
|
69
75
|
ret_val += f"\t{image[:50]}...\n"
|
|
76
|
+
|
|
70
77
|
ret_val += f"Text Output: {len(self.text_output)} item(s)\n"
|
|
71
78
|
for text in self.text_output:
|
|
72
|
-
ret_val += f"\t{text}
|
|
79
|
+
ret_val += f"\t{text}\n"
|
|
80
|
+
|
|
73
81
|
ret_val += f"New Records: {len(self.new_records)} item(s)\n"
|
|
74
82
|
for record in self.new_records:
|
|
75
|
-
ret_val += f"
|
|
83
|
+
ret_val += f"{json.dumps(record, indent=2)}\n"
|
|
84
|
+
|
|
76
85
|
ret_val += f"Logs: {len(self.logs)} item(s)\n"
|
|
77
86
|
for log in self.logs:
|
|
78
87
|
ret_val += f"\t{log}\n"
|
|
@@ -237,16 +246,17 @@ class TestClient:
|
|
|
237
246
|
sapio_user=self.connection,
|
|
238
247
|
tool_name=tool_name,
|
|
239
248
|
config_field_values=self._config_fields,
|
|
249
|
+
dry_run=is_dry_run,
|
|
250
|
+
verbose_logging=True,
|
|
240
251
|
input=[
|
|
241
252
|
StepInputBatchPbo(is_partial=False, item_container=item)
|
|
242
253
|
for item in self._request_inputs
|
|
243
|
-
]
|
|
244
|
-
dry_run=is_dry_run,
|
|
245
|
-
verbose_logging=True
|
|
254
|
+
]
|
|
246
255
|
)
|
|
247
256
|
)
|
|
248
257
|
|
|
249
258
|
results = ToolOutput(tool_name)
|
|
259
|
+
|
|
250
260
|
match response.status:
|
|
251
261
|
case ProcessStepResponseStatusPbo.SUCCESS:
|
|
252
262
|
results.status = "Success"
|
|
@@ -255,6 +265,7 @@ class TestClient:
|
|
|
255
265
|
case _:
|
|
256
266
|
results.status = "Unknown"
|
|
257
267
|
results.message = response.status_message
|
|
268
|
+
|
|
258
269
|
for item in response.output:
|
|
259
270
|
container = item.item_container
|
|
260
271
|
|
|
@@ -269,7 +280,8 @@ class TestClient:
|
|
|
269
280
|
results.text_output.extend(container.text_container.items)
|
|
270
281
|
|
|
271
282
|
for record in response.new_records:
|
|
272
|
-
|
|
283
|
+
field_map: dict[str, Any] = {x: ProtobufUtils.field_pbo_to_value(y) for x, y in record.fields.items()}
|
|
284
|
+
results.new_records.append(field_map)
|
|
273
285
|
|
|
274
286
|
results.logs.extend(response.log)
|
|
275
287
|
|
|
@@ -893,7 +893,7 @@ class ToolBase(ABC):
|
|
|
893
893
|
if field_name not in raw_configs:
|
|
894
894
|
config_fields[field_name] = ProtobufUtils.field_def_pbo_to_default_value(field_def)
|
|
895
895
|
else:
|
|
896
|
-
config_fields[field_name] = ProtobufUtils.field_pbo_to_value(
|
|
896
|
+
config_fields[field_name] = ProtobufUtils.field_pbo_to_value(raw_configs[field_name])
|
|
897
897
|
return config_fields
|
|
898
898
|
|
|
899
899
|
@staticmethod
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/__init__.py
RENAMED
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/ai/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/chem/Molecules.py
RENAMED
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/chem/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/eln/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/files/file_util.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/general/aliases.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/rules/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/samples/aliquot.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/src/sapiopycommons/webhook/__init__.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/AF-A0A009IHW8-F1-model_v4.cif
RENAMED
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/_do_not_add_init_py_here
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/chem_test_curation_queue.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/8_color_ICS.wsp
RENAMED
|
File without changes
|
{sapiopycommons-2025.7.22a651 → sapiopycommons-2025.7.23a659}/tests/flowcyto/COVID19_W_001_O.fcs
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|