sapiopycommons 2025.7.14a610__tar.gz → 2025.7.17a612__tar.gz

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  1. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/PKG-INFO +1 -1
  2. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/pyproject.toml +1 -1
  3. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/callbacks/callback_util.py +1 -1
  4. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/chem/IndigoMolecules.py +0 -2
  5. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/recordmodel/record_handler.py +161 -107
  6. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/webhook/webhook_handlers.py +6 -4
  7. sapiopycommons-2025.7.14a610/src/sapiopycommons/chem/ps_commons.py +0 -763
  8. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/.gitignore +0 -0
  9. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/LICENSE +0 -0
  10. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/README.md +0 -0
  11. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/__init__.py +0 -0
  12. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/callbacks/__init__.py +0 -0
  13. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/callbacks/field_builder.py +0 -0
  14. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/chem/Molecules.py +0 -0
  15. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/chem/__init__.py +0 -0
  16. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/customreport/__init__.py +0 -0
  17. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
  18. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/customreport/column_builder.py +0 -0
  19. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
  20. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/customreport/term_builder.py +0 -0
  21. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/datatype/__init__.py +0 -0
  22. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/datatype/attachment_util.py +0 -0
  23. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/datatype/data_fields.py +0 -0
  24. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
  25. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/__init__.py +0 -0
  26. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/experiment_cache.py +0 -0
  27. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/experiment_handler.py +0 -0
  28. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
  29. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
  30. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/experiment_tags.py +0 -0
  31. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/plate_designer.py +0 -0
  32. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/eln/step_creation.py +0 -0
  33. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/__init__.py +0 -0
  34. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/complex_data_loader.py +0 -0
  35. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_bridge.py +0 -0
  36. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
  37. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_data_handler.py +0 -0
  38. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_util.py +0 -0
  39. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_validator.py +0 -0
  40. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/files/file_writer.py +0 -0
  41. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
  42. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
  43. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/__init__.py +0 -0
  44. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/accession_service.py +0 -0
  45. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/aliases.py +0 -0
  46. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/audit_log.py +0 -0
  47. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/custom_report_util.py +0 -0
  48. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/data_structure_util.py +0 -0
  49. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/directive_util.py +0 -0
  50. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/exceptions.py +0 -0
  51. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/html_formatter.py +0 -0
  52. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/popup_util.py +0 -0
  53. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/sapio_links.py +0 -0
  54. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/storage_util.py +0 -0
  55. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/general/time_util.py +0 -0
  56. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/multimodal/multimodal.py +0 -0
  57. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
  58. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/processtracking/__init__.py +0 -0
  59. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
  60. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/processtracking/endpoints.py +0 -0
  61. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/recordmodel/__init__.py +0 -0
  62. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/rules/__init__.py +0 -0
  63. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
  64. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
  65. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/samples/aliquot.py +0 -0
  66. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  67. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
  68. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/webhook/__init__.py +0 -0
  69. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/webhook/webhook_context.py +0 -0
  70. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
  71. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
  72. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/_do_not_add_init_py_here +0 -0
  73. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/accession_test.py +0 -0
  74. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/aliquot_test.py +0 -0
  75. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/bio_reg_test.py +0 -0
  76. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/chem_test.py +0 -0
  77. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/chem_test_curation_queue.py +0 -0
  78. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/curation_queue_test.sdf +0 -0
  79. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/data_type_models.py +0 -0
  80. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
  81. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
  82. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
  83. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto/8_color_ICS.wsp +0 -0
  84. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
  85. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/flowcyto_test.py +0 -0
  86. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/kappa.chains.fasta +0 -0
  87. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/mafft_test.py +0 -0
  88. {sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/tests/test.gb +0 -0
{sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: sapiopycommons
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- Version: 2025.7.14a610
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+ Version: 2025.7.17a612
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  Summary: Official Sapio Python API Utilities Package
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  Project-URL: Homepage, https://github.com/sapiosciences
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  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
{sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "sapiopycommons"
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- version='2025.07.14a610'
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+ version='2025.07.17a612'
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  authors = [
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  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },
{sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/callbacks/callback_util.py RENAMED
@@ -780,7 +780,7 @@ class CallbackUtil:
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  # FR-47690: Set default values for fields that aren't present.
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  for row in values:
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  for field in fields:
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- if field.data_field_name not in values:
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+ if field.data_field_name not in row:
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  row[field.data_field_name] = field.default_value
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  # Convert the group_by parameter to a field name.
{sapiopycommons-2025.7.14a610 → sapiopycommons-2025.7.17a612}/src/sapiopycommons/chem/IndigoMolecules.py RENAMED
@@ -6,8 +6,6 @@ indigo = Indigo()
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  renderer = IndigoRenderer(indigo)
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  indigo.setOption("render-output-format", "svg")
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  indigo.setOption("ignore-stereochemistry-errors", True)
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- # Ignore only if loading as non-query object. That is the meaning of this flag. Does nothing if it's query molecule.
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- indigo.setOption("ignore-noncritical-query-features", True)
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  indigo.setOption("render-stereo-style", "ext")
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  indigo.setOption("aromaticity-model", "generic")
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  indigo.setOption("render-coloring", True)