sapiopycommons 2025.6.30a572__tar.gz → 2025.7.1a575__tar.gz

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  1. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/PKG-INFO +2 -2
  2. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/pyproject.toml +2 -2
  3. sapiopycommons-2025.7.1a575/src/sapiopycommons/ai/tool_of_tools.py +917 -0
  4. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/callbacks/callback_util.py +665 -332
  5. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/callbacks/field_builder.py +2 -0
  6. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/chem/IndigoMolecules.py +29 -1
  7. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/chem/Molecules.py +3 -3
  8. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/customreport/auto_pagers.py +26 -1
  9. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/customreport/term_builder.py +1 -1
  10. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/datatype/pseudo_data_types.py +349 -326
  11. sapiopycommons-2025.7.1a575/src/sapiopycommons/eln/experiment_cache.py +188 -0
  12. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/eln/experiment_handler.py +408 -767
  13. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/eln/experiment_report_util.py +11 -6
  14. sapiopycommons-2025.7.1a575/src/sapiopycommons/eln/experiment_step_factory.py +476 -0
  15. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/eln/plate_designer.py +7 -2
  16. sapiopycommons-2025.7.1a575/src/sapiopycommons/eln/step_creation.py +236 -0
  17. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_util.py +7 -5
  18. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/accession_service.py +2 -2
  19. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/aliases.py +3 -1
  20. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/audit_log.py +7 -0
  21. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/custom_report_util.py +12 -0
  22. sapiopycommons-2025.7.1a575/src/sapiopycommons/general/data_structure_util.py +115 -0
  23. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/processtracking/custom_workflow_handler.py +11 -1
  24. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/processtracking/endpoints.py +27 -0
  25. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/recordmodel/record_handler.py +657 -317
  26. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/rules/eln_rule_handler.py +8 -1
  27. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/rules/on_save_rule_handler.py +8 -1
  28. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/webhook/webhook_handlers.py +3 -0
  29. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/webhook/webservice_handlers.py +2 -2
  30. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.py +0 -43
  31. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2.pyi +0 -31
  32. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/fields_pb2_grpc.py +0 -24
  33. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.py +0 -123
  34. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2.pyi +0 -598
  35. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/fielddefinitions/proto/velox_field_def_pb2_grpc.py +0 -24
  36. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.py +0 -45
  37. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_output_pb2.pyi +0 -42
  38. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_output_pb2_grpc.py +0 -24
  39. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_pb2.py +0 -43
  40. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_pb2.pyi +0 -43
  41. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/proto/step_pb2_grpc.py +0 -24
  42. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.py +0 -53
  43. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/script/proto/script_pb2.pyi +0 -99
  44. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/script/proto/script_pb2_grpc.py +0 -153
  45. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.py +0 -57
  46. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2.pyi +0 -96
  47. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/entry_pb2_grpc.py +0 -24
  48. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.py +0 -67
  49. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2.pyi +0 -220
  50. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/plan/tool/proto/tool_pb2_grpc.py +0 -154
  51. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.py +0 -39
  52. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2.pyi +0 -32
  53. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/api/session/proto/sapio_conn_info_pb2_grpc.py +0 -24
  54. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/protobuf_utils.py +0 -454
  55. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/test_client.py +0 -212
  56. sapiopycommons-2025.6.30a572/src/sapiopycommons/ai/tool_service_base.py +0 -799
  57. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/.gitignore +0 -0
  58. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/LICENSE +0 -0
  59. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/README.md +0 -0
  60. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/__init__.py +0 -0
  61. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/ai/__init__.py +0 -0
  62. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/callbacks/__init__.py +0 -0
  63. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/chem/__init__.py +0 -0
  64. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/customreport/__init__.py +0 -0
  65. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/customreport/column_builder.py +0 -0
  66. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
  67. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/datatype/__init__.py +0 -0
  68. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/datatype/attachment_util.py +0 -0
  69. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/datatype/data_fields.py +0 -0
  70. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/eln/__init__.py +0 -0
  71. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/eln/experiment_tags.py +0 -0
  72. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/__init__.py +0 -0
  73. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/complex_data_loader.py +0 -0
  74. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_bridge.py +0 -0
  75. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
  76. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_data_handler.py +0 -0
  77. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_validator.py +0 -0
  78. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/files/file_writer.py +0 -0
  79. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
  80. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
  81. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/__init__.py +0 -0
  82. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/directive_util.py +0 -0
  83. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/exceptions.py +0 -0
  84. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/html_formatter.py +0 -0
  85. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/popup_util.py +0 -0
  86. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/sapio_links.py +0 -0
  87. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/storage_util.py +0 -0
  88. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/general/time_util.py +0 -0
  89. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/multimodal/multimodal.py +0 -0
  90. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
  91. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/processtracking/__init__.py +0 -0
  92. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/recordmodel/__init__.py +0 -0
  93. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/rules/__init__.py +0 -0
  94. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/samples/aliquot.py +0 -0
  95. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  96. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
  97. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/webhook/__init__.py +0 -0
  98. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/src/sapiopycommons/webhook/webhook_context.py +0 -0
  99. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
  100. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/_do_not_add_init_py_here +0 -0
  101. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/accession_test.py +0 -0
  102. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/aliquot_test.py +0 -0
  103. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/bio_reg_test.py +0 -0
  104. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/chem_test.py +0 -0
  105. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/chem_test_curation_queue.py +0 -0
  106. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/curation_queue_test.sdf +0 -0
  107. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/data_type_models.py +0 -0
  108. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
  109. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
  110. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
  111. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto/8_color_ICS.wsp +0 -0
  112. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
  113. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/flowcyto_test.py +0 -0
  114. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/kappa.chains.fasta +0 -0
  115. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/mafft_test.py +0 -0
  116. {sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/tests/test.gb +0 -0
{sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: sapiopycommons
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- Version: 2025.6.30a572
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+ Version: 2025.7.1a575
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  Summary: Official Sapio Python API Utilities Package
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  Project-URL: Homepage, https://github.com/sapiosciences
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  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -17,7 +17,7 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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  Classifier: Topic :: Software Development :: Libraries :: Python Modules
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  Requires-Python: >=3.10
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  Requires-Dist: databind>=4.5
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- Requires-Dist: sapiopylib>=2024.5.24.210
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+ Requires-Dist: sapiopylib>=2025.4.17.264
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  Description-Content-Type: text/markdown
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{sapiopycommons-2025.6.30a572 → sapiopycommons-2025.7.1a575}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "sapiopycommons"
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- version='2025.06.30a572'
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+ version='2025.07.01a575'
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  authors = [
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  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },
@@ -14,7 +14,7 @@ license = "MPL-2.0"
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  readme = "README.md"
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  requires-python = ">=3.10"
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  dependencies = [
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- 'sapiopylib>=2024.5.24.210', 'databind>=4.5'
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+ 'sapiopylib>=2025.4.17.264', 'databind>=4.5'
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  ]
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  classifiers = [
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  "Intended Audience :: Developers",