sapiopycommons 2025.6.30a570__tar.gz → 2025.6.30a571__tar.gz

{sapiopycommons-2025.6.30a570 → sapiopycommons-2025.6.30a571}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.6.30a570
+Version: 2025.6.30a571
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>

{sapiopycommons-2025.6.30a570 → sapiopycommons-2025.6.30a571}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "sapiopycommons"
-version='2025.06.30a570'
+version='2025.06.30a571'
 authors = [
     { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
     { name="Yechen Qiao", email="yqiao@sapiosciences.com" },

sapiopycommons-2025.6.30a571/src/sapiopycommons/ai/test_client.py

@@ -0,0 +1,197 @@
+import json
+from typing import Mapping, Any
+
+import grpc
+
+from sapiopycommons.ai.api.fielddefinitions.proto.fields_pb2 import FieldValuePbo
+from sapiopycommons.ai.api.plan.tool.proto.entry_pb2 import DataTypePbo, StepBinaryContainerPbo, StepCsvRowPbo, \
+    StepCsvHeaderRowPbo, StepCsvContainerPbo, StepJsonContainerPbo, StepImageContainerPbo, StepTextContainerPbo, \
+    StepItemContainerPbo, StepInputBatchPbo
+from sapiopycommons.ai.api.plan.tool.proto.tool_pb2 import ProcessStepResponsePbo, ProcessStepRequestPbo
+from sapiopycommons.ai.api.plan.tool.proto.tool_pb2_grpc import ToolServiceStub
+from sapiopycommons.ai.api.session.proto.sapio_conn_info_pb2 import SapioConnectionInfoPbo, SapioUserSecretTypePbo
+
+
+class TestOutput:
+    """
+    A class for holding the output of a TestClient that calls a ToolService. TestOutput objects an be
+    printed to show the output of the tool in a human-readable format.
+    """
+    binary_output: list[bytes]
+    csv_output: list[dict[str, Any]]
+    json_output: list[Any]
+    image_output: list[bytes]
+    text_output: list[str]
+
+    new_records: list[Mapping[str, FieldValuePbo]]
+
+    logs: list[str]
+
+    def __init__(self):
+        self.binary_output = []
+        self.csv_output = []
+        self.json_output = []
+        self.image_output = []
+        self.text_output = []
+        self.new_records = []
+        self.logs = []
+
+    def __str__(self):
+        ret_val: str = ""
+        ret_val += f"Binary Output: {len(self.binary_output)} item(s)\n"
+        for binary in self.binary_output:
+            ret_val += f"\t{len(binary)} byte(s)\n"
+            ret_val += f"\t{binary[:50]}...\n"
+        ret_val += f"CSV Output: {len(self.csv_output)} item(s)\n"
+        if self.csv_output:
+            ret_val += f"\tHeaders: {', '.join(self.csv_output[0].keys())}\n"
+            for i, csv_row in enumerate(self.csv_output):
+                ret_val += f"\t{i}: {', '.join(f'{v}' for k, v in csv_row.items())}\n"
+        ret_val += f"JSON Output: {len(self.json_output)} item(s)\n"
+        if self.json_output:
+            ret_val += f"\t{json.dumps(self.json_output, indent=2)}\n"
+        ret_val += f"Image Output: {len(self.image_output)} item(s)\n"
+        for image in self.image_output:
+            ret_val += f"\t{len(image)} bytes\n"
+            ret_val += f"\t{image[:50]}...\n"
+        ret_val += f"Text Output: {len(self.text_output)} item(s)\n"
+        for text in self.text_output:
+            ret_val += f"\t{text}...\n"
+        ret_val += f"New Records: {len(self.new_records)} item(s)\n"
+        for record in self.new_records:
+            ret_val += f"\t{json.dumps(record, indent=2)}\n"
+        ret_val += f"Logs: {len(self.logs)} item(s)\n"
+        for log in self.logs:
+            ret_val += f"\t{log}\n"
+        return ret_val
+
+
+class TestClient:
+    """
+    A client for testing a ToolService. This client can be used to send requests to a tool and receive
+    responses.
+    """
+    server_url: str
+    tool_name: str
+    connection: SapioConnectionInfoPbo
+    request_inputs: list[Any]
+
+    def __init__(self, server_url: str, tool_name: str):
+        """
+        :param server_url: The URL of the gRPC server to connect to.
+        :param tool_name: The name of the tool to call on the server.
+        """
+        self.create_user()
+        self.server_url = server_url
+        self.tool_name = tool_name
+        self.request_inputs = []
+
+    def create_user(self):
+        """
+        Create a SapioConnectionInfoPbo object with test credentials. This method can be overridden to
+        create a user with specific credentials for testing.
+        """
+        self.connection = SapioConnectionInfoPbo()
+        self.connection.username = "Testing"
+        self.connection.webservice_url = "https://localhost:8080/webservice/api"
+        self.connection.app_guid = "1234567890"
+        self.connection.secret_type = SapioUserSecretTypePbo.PASSWORD
+        self.connection.rmi_host.append("Testing")
+        self.connection.rmi_port = 9001
+        self.connection.secret = "password"
+
+    def add_input_input(self, input_data: list[bytes]) -> None:
+        """
+        Add a binary input to the the next request.
+        """
+        self._add_input(DataTypePbo.BINARY, StepBinaryContainerPbo(items=input_data))
+
+    def add_csv_input(self, input_data: list[dict[str, Any]]) -> None:
+        """
+        Add a CSV input to the next request.
+        """
+        csv_items = []
+        for row in input_data:
+            csv_items.append(StepCsvRowPbo(cells=[str(value) for value in row.values()]))
+        header = StepCsvHeaderRowPbo(cells=list(input_data[0].keys()))
+        self._add_input(DataTypePbo.CSV, StepCsvContainerPbo(header=header, items=csv_items))
+
+    def add_json_input(self, input_data: list[dict[str, Any]]) -> None:
+        """
+        Add a JSON input to the next request.
+        """
+        self._add_input(DataTypePbo.JSON, StepJsonContainerPbo(items=[json.dumps(x) for x in input_data]))
+
+    def add_image_input(self, input_data: list[bytes], image_format: str = "png") -> None:
+        """
+        Add an image input to the next request.
+        """
+        self._add_input(DataTypePbo.IMAGE, StepImageContainerPbo(items=input_data, image_format=image_format))
+
+    def add_text_input(self, input_data: list[str]) -> None:
+        """
+        Add a text input to the next request.
+        """
+        self._add_input(DataTypePbo.TEXT, StepTextContainerPbo(items=input_data))
+
+    def _add_input(self, data_type: DataTypePbo, items: Any) -> None:
+        """
+        Helper method for adding inputs to the next request.
+        """
+        match data_type:
+            case DataTypePbo.BINARY:
+                container = StepItemContainerPbo(dataType=data_type, binary_container=items)
+            case DataTypePbo.CSV:
+                container = StepItemContainerPbo(dataType=data_type, csv_container=items)
+            case DataTypePbo.JSON:
+                container = StepItemContainerPbo(dataType=data_type, json_container=items)
+            case DataTypePbo.IMAGE:
+                container = StepItemContainerPbo(dataType=data_type, image_container=items)
+            case DataTypePbo.TEXT:
+                container = StepItemContainerPbo(dataType=data_type, text_container=items)
+            case _:
+                raise ValueError(f"Unsupported data type: {data_type}")
+        self.request_inputs.append(container)
+
+    def send_request(self) -> TestOutput:
+        """
+        Send the request to the tool service. This will send all the inputs that have been added using the
+        add_X_input functions.
+
+        :return: A TestOutput object containing the results of the tool service call.
+        """
+        with grpc.insecure_channel(self.server_url) as channel:
+            stub = ToolServiceStub(channel)
+
+            response: ProcessStepResponsePbo = stub.ProcessData(
+                ProcessStepRequestPbo(
+                    sapio_user=self.connection,
+                    tool_name=self.tool_name,
+                    input=[
+                        StepInputBatchPbo(is_partial=False, item_container=item)
+                        for item in self.request_inputs
+                    ]
+                )
+            )
+
+            results = TestOutput()
+
+            for item in response.output:
+                container = item.item_container
+
+                results.binary_output.extend(container.binary_container.items)
+                for header in container.csv_container.header.cells:
+                    output_row: dict[str, Any] = {}
+                    for i, row in enumerate(container.csv_container.items):
+                        output_row[header] = row.cells[i]
+                    results.csv_output.append(output_row)
+                results.json_output.extend([json.loads(x) for x in container.json_container.items])
+                results.image_output.extend(container.image_container.items)
+                results.text_output.extend(container.text_container.items)
+
+            for record in response.new_records:
+                results.new_records.append(record.fields)
+
+            results.logs.extend(response.log)
+
+            return results

{sapiopycommons-2025.6.30a570 → sapiopycommons-2025.6.30a571}/src/sapiopycommons/ai/tool_service_base.py

@@ -643,8 +643,7 @@ class ToolBase(ABC):
     def log_info(self, message: str) -> None:
         """
         Log an info message for this tool. If verbose logging is enabled, this message will be included in the logs
-        returned to the caller.
-        .
+        returned to the caller. Empty/None inputs will not be logged.
 
         :param message: The message to log.
         """
@@ -657,6 +656,7 @@ class ToolBase(ABC):
     def log_warning(self, message: str) -> None:
         """
         Log a warning message for this tool. This message will be included in the logs returned to the caller.
+        Empty/None inputs will not be logged.
 
         :param message: The message to log.
         """
@@ -668,6 +668,7 @@ class ToolBase(ABC):
     def log_error(self, message: str) -> None:
         """
         Log an error message for this tool. This message will be included in the logs returned to the caller.
+        Empty/None inputs will not be logged.
 
         :param message: The message to log.
         """
@@ -679,6 +680,7 @@ class ToolBase(ABC):
     def log_exception(self, message: str, e: Exception) -> None:
         """
         Log an exception for this tool. This message will be included in the logs returned to the caller.
+        Empty/None inputs will not be logged.
 
         :param message: The message to log.
         :param e: The exception to log.
@@ -761,7 +763,8 @@ class ToolBase(ABC):
 
     def get_config_fields(self) -> dict[str, FieldValue]:
         """
-        Get the configuration fields from the request object.
+        Get the configuration field values from the request object. If a field is not present in the request,
+        the default value from the config definition will be returned.
 
         :return: A dictionary of configuration field names and their values.
         """